FFCP PHASE1:Hg19::chr1:203148146..203148212,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-361bp_to_CU678996_5end | |association_with_transcript=-361bp_to_CU678996_5end | ||
|cluster_id=chr1:203148146..203148212,+ | |||
|coexpression_cluster_id=C283 | |||
|description=CAGE_peak_1_at_CU678996_5end | |description=CAGE_peak_1_at_CU678996_5end | ||
|id=chr1:203148146..203148212,+ | |id=chr1:203148146..203148212,+ | ||
|ontology_enrichment_celltype=CL:0000153!3.63e-09!9;CL:0000447!3.63e-09!9;CL:0000135!6.09e-08!3;CL:0000386!6.09e-08!3;CL:0000388!6.09e-08!3;CL:0000499!9.56e-08!27;CL:0000235!1.12e-07!10 | |ontology_enrichment_celltype=CL:0000153!3.63e-09!9;CL:0000447!3.63e-09!9;CL:0000135!6.09e-08!3;CL:0000386!6.09e-08!3;CL:0000388!6.09e-08!3;CL:0000499!9.56e-08!27;CL:0000235!1.12e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000235;1.96e-28;6!CL:0000153;4.98e-28;9!CL:0000447;4.98e-28;9!CL:0000135;5.78e-22;3!CL:0000388;5.78e-22;3!CL:0000499;3.74e-19;28!CL:0000138;4.74e-19;6!CL:0000327;1.25e-16;15!CL:0002540;2.98e-11;6!CL:0000214;1.06e-10;3!CL:0000151;6.16e-07;36!CL:0002092;6.25e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000235,2.27e-28,6;CL:0000153,4.75e-28,9;CL:0000447,4.75e-28,9;CL:0000135,6.21e-22,3;CL:0000388,6.21e-22,3;CL:0000499,3.74e-19,28;CL:0000058,4.53e-19,6;CL:0000138,4.53e-19,6;CL:0000327,1.21e-16,15;CL:0002540,3.14e-11,6;CL:0000214,1.06e-10,3;CL:0000151,7.92e-09,36;CL:0002092,6.44e-07,10;CL:0000134,7.49e-07,354 | |||
|ontology_enrichment_development_v019=UBERON:0010115;4.11e-08;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5662;2.17e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:5662,2.02e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0001871!4.85e-08!7;UBERON:0000043!6.09e-08!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0007846;5.78e-22;3!UBERON:0000043;5.78e-22;3!UBERON:0007845;5.78e-22;3!UBERON:0006915;1.06e-10;3!UBERON:0007616;1.06e-10;3!UBERON:0002217;1.06e-10;3!UBERON:0002018;1.06e-10;3!UBERON:0001282;1.57e-08;1!UBERON:0009842;1.57e-08;1!UBERON:0003704;1.57e-08;1!UBERON:0001171;1.57e-08;1!UBERON:0001172;1.57e-08;1!UBERON:0002363;4.11e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,6.21e-22,3;UBERON:0000043,6.21e-22,3;UBERON:0007845,6.21e-22,3;UBERON:0006915,1.06e-10,3;UBERON:0007616,1.06e-10,3;UBERON:0002217,1.06e-10,3;UBERON:0002018,1.06e-10,3;UBERON:0002204,1.38e-08,167;UBERON:0001282,1.63e-08,1;UBERON:0009842,1.63e-08,1;UBERON:0003704,1.63e-08,1;UBERON:0001171,1.63e-08,1;UBERON:0001172,1.63e-08,1;UBERON:0002363,4.11e-08,1;UBERON:0007645,4.11e-08,1;UBERON:0007647,4.11e-08,1;UBERON:0010115,4.11e-08,1;UBERON:0001434,1.10e-07,100;UBERON:0002371,2.95e-07,76 | |||
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| ||
|short_description=p1@CU678996 | |short_description=p1@CU678996 | ||
}} | }} |
Latest revision as of 02:23, 28 July 2015
Short description: | p1@CU678996 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CU678996_5end |
Coexpression cluster: | C283_tenocyte_Chondrocyte_mesenchymal_Macrophage_pleomorphic_Synoviocyte_cholangiocellular |
Association with transcript: | -361bp_to_CU678996_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 2.27e-28 | 6 |
GAG secreting cell | 4.75e-28 | 9 |
carbohydrate secreting cell | 4.75e-28 | 9 |
fibrocyte | 6.21e-22 | 3 |
tendon cell | 6.21e-22 | 3 |
stromal cell | 3.74e-19 | 28 |
chondroblast | 4.53e-19 | 6 |
chondrocyte | 4.53e-19 | 6 |
extracellular matrix secreting cell | 1.21e-16 | 15 |
mesenchymal stem cell of the bone marrow | 3.14e-11 | 6 |
synovial cell | 1.06e-10 | 3 |
secretory cell | 7.92e-09 | 36 |
bone marrow cell | 6.44e-07 | 10 |
mesenchymal cell | 7.49e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 6.21e-22 | 3 |
tendon | 6.21e-22 | 3 |
regular connective tissue | 6.21e-22 | 3 |
stratified squamous epithelium | 1.06e-10 | 3 |
layer of synovial tissue | 1.06e-10 | 3 |
synovial joint | 1.06e-10 | 3 |
synovial membrane of synovial joint | 1.06e-10 | 3 |
musculoskeletal system | 1.38e-08 | 167 |
intralobular bile duct | 1.63e-08 | 1 |
acinus | 1.63e-08 | 1 |
intrahepatic bile duct | 1.63e-08 | 1 |
portal lobule | 1.63e-08 | 1 |
hepatic acinus | 1.63e-08 | 1 |
dura mater | 4.11e-08 | 1 |
future meninx | 4.11e-08 | 1 |
ectomeninx | 4.11e-08 | 1 |
future dura mater | 4.11e-08 | 1 |
skeletal system | 1.10e-07 | 100 |
bone marrow | 2.95e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
pleomorphic carcinoma | 2.02e-08 | 1 |