FFCP PHASE1:Hg19::chr5:98105268..98105295,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=285704 | |EntrezGene=285704 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26896 | |HGNC=26896 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=128bp_to_ENST00000507054_5end | |association_with_transcript=128bp_to_ENST00000507054_5end | ||
|cluster_id=chr5:98105268..98105295,+ | |||
|coexpression_cluster_id=C952 | |||
|description=CAGE_peak_2_at_RGMB_5end | |description=CAGE_peak_2_at_RGMB_5end | ||
|id=chr5:98105268..98105295,+ | |id=chr5:98105268..98105295,+ | ||
|ontology_enrichment_celltype=CL:0000055!9.78e-35!180;CL:0000057!5.81e-22!75;CL:0000680!3.47e-15!57;CL:0000056!3.47e-15!57;CL:0000355!3.47e-15!57;CL:0000359!1.58e-14!32;CL:0002620!2.34e-14!23;CL:0000183!2.97e-14!59;CL:0000222!4.71e-14!119;CL:0000187!8.48e-14!54;CL:0000192!1.06e-13!42;CL:0000514!1.06e-13!42;CL:0000393!7.64e-13!60;CL:0000211!7.64e-13!60;CL:0002321!3.51e-11!248;CL:0000220!4.87e-11!246 | |ontology_enrichment_celltype=CL:0000055!9.78e-35!180;CL:0000057!5.81e-22!75;CL:0000680!3.47e-15!57;CL:0000056!3.47e-15!57;CL:0000355!3.47e-15!57;CL:0000359!1.58e-14!32;CL:0002620!2.34e-14!23;CL:0000183!2.97e-14!59;CL:0000222!4.71e-14!119;CL:0000187!8.48e-14!54;CL:0000192!1.06e-13!42;CL:0000514!1.06e-13!42;CL:0000393!7.64e-13!60;CL:0000211!7.64e-13!60;CL:0002321!3.51e-11!248;CL:0000220!4.87e-11!246 | ||
|ontology_enrichment_celltype_v019=CL:0002620;6.90e-17;23!CL:0000359;1.38e-15;32!CL:0000192;4.95e-12;43!CL:0000187;7.38e-09;55!CL:0000057;2.83e-08;73!CL:0000134;2.40e-07;55!CL:0000723;2.81e-07;61!CL:0000048;3.36e-07;58!CL:0000393;3.93e-07;61!CL:0000211;3.93e-07;61!CL:0002539;4.92e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.21e-22,76;CL:0000680,2.82e-18,58;CL:0000056,2.82e-18,58;CL:0000355,2.82e-18,58;CL:0002620,6.11e-17,23;CL:0000359,1.13e-16,32;CL:0000187,1.33e-16,55;CL:0000192,8.36e-16,43;CL:0000514,8.36e-16,43;CL:0000393,1.52e-14,61;CL:0000211,1.52e-14,61;CL:0000222,1.58e-14,121;CL:0002321,1.63e-07,250;CL:0002539,4.77e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000514;4.95e-12;43!CL:0000355;1.20e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;9.78e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,8.32e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!8.56e-22!83;UBERON:0002329!8.56e-22!83;UBERON:0003077!8.56e-22!83;UBERON:0003059!8.56e-22!83;UBERON:0007282!8.56e-22!83;UBERON:0009618!8.56e-22!83;UBERON:0007285!8.56e-22!83;UBERON:0004290!8.18e-19!70;UBERON:0000486!2.27e-18!82;UBERON:0000475!1.45e-17!365;UBERON:0001637!4.96e-16!42;UBERON:0003509!4.96e-16!42;UBERON:0004572!4.96e-16!42;UBERON:0002049!4.47e-15!79;UBERON:0007798!4.47e-15!79;UBERON:0001981!6.75e-15!60;UBERON:0007500!6.75e-15!60;UBERON:0004537!6.75e-15!60;UBERON:0006965!6.75e-15!60;UBERON:0002199!7.67e-15!45;UBERON:0002416!7.67e-15!45;UBERON:0002097!1.17e-14!40;UBERON:0001134!1.47e-14!61;UBERON:0002036!1.47e-14!61;UBERON:0003082!1.47e-14!61;UBERON:0000055!1.93e-14!69;UBERON:0002385!1.98e-14!63;UBERON:0001015!1.98e-14!63;UBERON:0000383!1.98e-14!63;UBERON:0000119!5.34e-14!312;UBERON:0000483!1.03e-13!309;UBERON:0004573!2.52e-13!33;UBERON:0004571!2.52e-13!33;UBERON:0004872!2.46e-12!84;UBERON:0003102!2.55e-12!95;UBERON:0000481!5.73e-12!347;UBERON:0005256!8.23e-11!143;UBERON:0000468!5.54e-10!659;UBERON:0004535!1.05e-08!110;UBERON:0000467!1.11e-08!625;UBERON:0000480!1.17e-08!626;UBERON:0000490!4.60e-08!138;UBERON:0001009!4.93e-08!113;UBERON:0000947!9.18e-08!21;UBERON:0010191!9.18e-08!21;UBERON:0002100!4.72e-07!216;UBERON:0000477!8.79e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;4.73e-14;33!UBERON:0004571;4.73e-14;33!UBERON:0002097;1.70e-12;41!UBERON:0001637;3.17e-12;42!UBERON:0003509;3.17e-12;42!UBERON:0004572;3.17e-12;42!UBERON:0002199;5.75e-11;46!UBERON:0002416;5.75e-11;46!UBERON:0003102;7.30e-10;50!UBERON:0000947;9.71e-09;21!UBERON:0010191;9.71e-09;21!UBERON:0007500;2.58e-08;56!UBERON:0001981;2.58e-08;56!UBERON:0004537;2.58e-08;56!UBERON:0004237;4.92e-07;10!UBERON:0004695;4.92e-07;10!UBERON:0002111;4.92e-07;10!UBERON:0004178;4.92e-07;10!UBERON:0002384;5.98e-07;198!UBERON:0002067;6.36e-07;9!UBERON:0002385;6.57e-07;31!UBERON:0001015;6.57e-07;31!UBERON:0000383;6.57e-07;31 | |||
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| ||
|short_description=p2@RGMB | |short_description=p2@RGMB | ||
}} | }} |
Latest revision as of 10:26, 19 September 2015
Short description: | p2@RGMB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RGMB_5end |
Coexpression cluster: | C952_basal_Fibroblast_tenocyte_Hair_Smooth_Preadipocyte_Myoblast |
Association with transcript: | 128bp_to_ENST00000507054_5end |
EntrezGene: | RGMB |
HGNC: | 26896 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.21e-22 | 76 |
muscle precursor cell | 2.82e-18 | 58 |
myoblast | 2.82e-18 | 58 |
multi-potent skeletal muscle stem cell | 2.82e-18 | 58 |
skin fibroblast | 6.11e-17 | 23 |
vascular associated smooth muscle cell | 1.13e-16 | 32 |
muscle cell | 1.33e-16 | 55 |
smooth muscle cell | 8.36e-16 | 43 |
smooth muscle myoblast | 8.36e-16 | 43 |
electrically responsive cell | 1.52e-14 | 61 |
electrically active cell | 1.52e-14 | 61 |
mesodermal cell | 1.58e-14 | 121 |
embryonic cell | 1.63e-07 | 250 |
aortic smooth muscle cell | 4.77e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 8.32e-07 | 14 |