FFCP PHASE1:Hg19::chr21:17566806..17566817,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=1274 | |HGNC=1274 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=18bp_to_ENST00000445461_5end | |association_with_transcript=18bp_to_ENST00000445461_5end | ||
|cluster_id=chr21:17566806..17566817,+ | |||
|coexpression_cluster_id=C4067 | |||
|description=CAGE_peak_19_at_LINC00478_5end | |description=CAGE_peak_19_at_LINC00478_5end | ||
|id=chr21:17566806..17566817,+ | |id=chr21:17566806..17566817,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002605;1.65e-18;3!CL:0000594;1.14e-08;3!CL:0000128;3.22e-08;7!CL:0000126;3.22e-08;7!CL:0000127;3.22e-08;7!CL:0000946;4.08e-07;1!CL:0000817;4.08e-07;1!CL:0000786;4.08e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.47e-18,3;CL:0000594,1.39e-08,3;CL:0000817,1.50e-08,3;CL:0000128,3.07e-08,7;CL:0000126,3.07e-08,7;CL:0000127,3.07e-08,7;CL:0002453,3.07e-08,7;CL:0000946,6.20e-07,1;CL:0000786,6.20e-07,1;CL:0000980,6.20e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0003056;6.20e-09;3!UBERON:0005425;1.58e-07;1!UBERON:0004874;1.58e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4960;1.05e-07;1!DOID:0070004;1.05e-07;1!DOID:12603;4.08e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4960,1.06e-07,1;DOID:0070004,1.06e-07,1;DOID:12603,3.41e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002616!2.26e-18!59;UBERON:0001049!3.39e-17!57;UBERON:0005068!3.39e-17!57;UBERON:0006241!3.39e-17!57;UBERON:0007135!3.39e-17!57;UBERON:0000955!4.57e-17!69;UBERON:0006238!4.57e-17!69;UBERON:0001017!5.77e-17!82;UBERON:0005743!2.08e-16!86;UBERON:0000073!5.98e-15!94;UBERON:0001016!5.98e-15!94;UBERON:0002346!1.14e-14!90;UBERON:0003075!7.43e-14!86;UBERON:0007284!7.43e-14!86;UBERON:0000153!2.49e-13!129;UBERON:0007811!2.49e-13!129;UBERON:0002780!3.45e-13!41;UBERON:0001890!3.45e-13!41;UBERON:0006240!3.45e-13!41;UBERON:0000033!4.07e-13!123;UBERON:0003080!1.27e-12!42;UBERON:0007023!1.19e-11!115;UBERON:0000924!2.65e-10!173;UBERON:0006601!2.65e-10!173;UBERON:0002020!6.75e-10!34;UBERON:0003528!6.75e-10!34;UBERON:0001893!8.56e-10!34;UBERON:0004121!1.23e-09!169;UBERON:0002791!2.11e-09!33;UBERON:0003056!5.67e-09!61;UBERON:0001869!9.42e-09!32;UBERON:0000956!1.79e-07!25;UBERON:0000203!1.79e-07!25 | |ontology_enrichment_uberon=UBERON:0002616!2.26e-18!59;UBERON:0001049!3.39e-17!57;UBERON:0005068!3.39e-17!57;UBERON:0006241!3.39e-17!57;UBERON:0007135!3.39e-17!57;UBERON:0000955!4.57e-17!69;UBERON:0006238!4.57e-17!69;UBERON:0001017!5.77e-17!82;UBERON:0005743!2.08e-16!86;UBERON:0000073!5.98e-15!94;UBERON:0001016!5.98e-15!94;UBERON:0002346!1.14e-14!90;UBERON:0003075!7.43e-14!86;UBERON:0007284!7.43e-14!86;UBERON:0000153!2.49e-13!129;UBERON:0007811!2.49e-13!129;UBERON:0002780!3.45e-13!41;UBERON:0001890!3.45e-13!41;UBERON:0006240!3.45e-13!41;UBERON:0000033!4.07e-13!123;UBERON:0003080!1.27e-12!42;UBERON:0007023!1.19e-11!115;UBERON:0000924!2.65e-10!173;UBERON:0006601!2.65e-10!173;UBERON:0002020!6.75e-10!34;UBERON:0003528!6.75e-10!34;UBERON:0001893!8.56e-10!34;UBERON:0004121!1.23e-09!169;UBERON:0002791!2.11e-09!33;UBERON:0003056!5.67e-09!61;UBERON:0001869!9.42e-09!32;UBERON:0000956!1.79e-07!25;UBERON:0000203!1.79e-07!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0003296;3.24e-14;4!UBERON:0010133;3.24e-14;4!UBERON:0001905;5.76e-13;2!UBERON:0002757;5.76e-13;2!UBERON:0010134;5.76e-13;2!UBERON:0005408;5.76e-13;2!UBERON:0001899;5.76e-13;2!UBERON:0001894;2.51e-08;7!UBERON:0000989;1.58e-07;1!UBERON:0000941;1.58e-07;1!UBERON:0001785;1.58e-07;1!UBERON:0002464;1.58e-07;1!UBERON:0004904;1.58e-07;1!UBERON:0008811;1.58e-07;1!UBERON:0001021;1.58e-07;1!UBERON:0006834;4.08e-07;1!UBERON:0002784;6.68e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003296,2.97e-14,4;UBERON:0010133,2.97e-14,4;UBERON:0001905,4.97e-13,2;UBERON:0002757,4.97e-13,2;UBERON:0010134,4.97e-13,2;UBERON:0005408,4.97e-13,2;UBERON:0001899,4.97e-13,2;UBERON:0001894,2.39e-08,7;UBERON:0006222,2.39e-08,7;UBERON:0000989,1.20e-07,1;UBERON:0008811,1.20e-07,1;UBERON:0006258,1.20e-07,1;UBERON:0005876,1.20e-07,1;UBERON:0004874,1.20e-07,1;UBERON:0000941,1.27e-07,1;UBERON:0001785,1.27e-07,1;UBERON:0002464,1.27e-07,1;UBERON:0004904,1.27e-07,1;UBERON:0001021,1.27e-07,1;UBERON:0003902,1.27e-07,1;UBERON:0005425,1.27e-07,1;UBERON:0006834,4.89e-07,1;UBERON:0002784,6.22e-07,4 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0.730310090387373,0,0.369363174230364,0,0.313454721478088,3.14859585844162,1.91624195102038,1.12988375635323,0,0,0,0,0,0,0,0,0,0.232401601740905,0.710846162437108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0,0.361439152384566,0,0.144846518960824,0,0,0.378139268656271,0,0,0.196468613246569,0,0,0.97364218096405,0.870648686496336,0.664789802594326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.803697554556718,0.22452937262617,0,0,0,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0.134710672069688,0,0.756787138224657,0.576175924479999,0.468642863667593,0,0,0,0.469737994575059,0.485618833104395,0,0,0.122834317311768,0,1.18800285728205,0,0,0,0.168336113954066,0.125118519871964,0,0,0,0,0,0,0,0.423863802319124,0.300091096084402,0.103052529238439,0.257640540045629,0,0,0.0974370051611986,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591534000199219,1.34867752062481,0.723033089650446,0.441175890929576,0.871517776369625,0,0.134831308160164,0.98110732562673,0.38474715694639,0,0,0.4115740113314,0,1.26755034821831,0,1.18157981336281,0,0,0,0,0,0,0.0925884451585296,0.325808305310325,0,0,0.115930404975077,0.352226082707465,0,0,0,0,0,0,0,0,0,0.503946384596579,0.283550194484773,0,0.290633938513962,0,0,0.528290604079356,0.207328115540772,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0.112131084345361,0.87192013766656,0.07333828582095,0.387815147273333,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358121926479791,0.112085143993527,0,0,0,0.508189248444927,0,0,0.167516265334349,0,0,0,0,0,0,0.271265023699736,0,0,0,0.117141414992713,0,0,0,0.664225598535437,0,0.173767228936166,0.195801157462741,0,0.206768026122887,0,0,0,0,0,0.248107807818777,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0.184161977871793,0,0.182091168006717,0.262248829918848,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0.412164046590889,0.27470839445503,0.082509499920588,0,0,0,0.386682873168488,0,0.15350367472613,0,1.6113036730241,0.580066775656914,1.02271952899321,0.267096106940212,0.330569830721956,0.192190067365106,0.510450849978337,0,0,0.31481234683064,0,0,0,0,0,0,1.48863347743867,0.316379424718726,0,0,0,0,0,0.179872457583315,0.274537029736055,0.235624804691373,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0.196498082026242,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0.534120355637366,0,0.245040215981032,1.48642540100575,1.298422916788,0.569134746787313,0,0.798317485731266,0,0,0.324621940274555,0,0,0,2.50634477090067,0.50787533340481,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0.146508179271894,2.30584991324076,0,0,0,0,0,0.994147647766298,0.562677665642051,0.111308705022906,0,0,0,0,0,0,0.369254416383208,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0.1137934482855,0,0,0,0.291604613383254,0,0,0.482385754501632,0,0.110579259931225,0.295547618953547,0.219385397153973,0.871507708151921,0,1.76985594558733,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0.0884575645033392,0,0.296521128680622,0,0,0.269604531922708,0,0.234264445725339,0,0,0,0,0,0,0.505492637027904,2.70582154946087,0.103688191397247,0,0.330991955875499,0,0,0,0,0,0,0,0.698906672968121,0,1.16107597546902,2.33885814675794,1.31384731285135,0.0969890164884194,0.441280633457501,0.451961481561065,0,0,0.379864775735272,0,0,0,0,0,0.687219576995494,0,0,0,0,0,0.104602846312333,0.101998217636322,0.288950589901519,0,0.410716136675979,0,0,0,0.558564802544508,0.687481272035051,0,0,0,0,0,0,0,0,0,0,0.295282444544246,0,0.795229689809303,0.817220436669454,0,0,0,1.1248694577575,0,0.364497339948148,0,0.236417121897595,0.104909176269996,0.316801009558219,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0.146552233678082,0,0.258565912723101,0.39669780522807,0.342173675768659,0,0,0.157204305099666,0.414239055347196,0,0.197611631897944,0,0,0.544017803369474,0.2506898940227,0.919036730290385,0.655745261419609,0,0,0.122026264901963,0.1251909307065,0.573409195690071,0.887432412294818,0.434674820589684,6.77908311187531,0,0.454947352624943,0.285465333544967,0,0,0,0.597019211547496,0.467426619694449,0.554805861502613,0.378806010550178,0.50313580350515,0,0,0,0.15543720058278,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0,0.219284049578707,0.176689145945881,0,0,0,0,0,0.691292180758654,0,0.132864840313363,0.163565394255844,0.327609848846413,0,0,0,0,4.82201943050284,0,0,0.279759015438889,0.622077260032973,0,0,0.471797825567689,0,0.509197589862076,0.212574920101683,0.247871528518004,0,0,0,0,0.352675943690684,0,0.513833800771676,0,0,0,0.756215088665154,0.0691572524642179,0.322951291263702,2.85538840518309,0,0,0,0,0,0,0.994581110581374,0.601682626794058,0,0,0,0,0,0.270150338473579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| ||
|short_description=p19@LINC00478 | |short_description=p19@LINC00478 | ||
}} | }} |
Latest revision as of 19:38, 17 September 2015
Short description: | p19@LINC00478 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_LINC00478_5end |
Coexpression cluster: | C4067_medulloblastoma_Astrocyte_myeloma_embryonic_epitheloid_adrenal_Dendritic |
Association with transcript: | 18bp_to_ENST00000445461_5end |
EntrezGene: | NA |
HGNC: | 1274 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.47e-18 | 3 |
skeletal muscle satellite cell | 1.39e-08 | 3 |
precursor B cell | 1.50e-08 | 3 |
oligodendrocyte | 3.07e-08 | 7 |
macroglial cell | 3.07e-08 | 7 |
astrocyte | 3.07e-08 | 7 |
oligodendrocyte precursor cell | 3.07e-08 | 7 |
antibody secreting cell | 6.20e-07 | 1 |
plasma cell | 6.20e-07 | 1 |
plasmablast | 6.20e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
gland of diencephalon | 2.97e-14 | 4 |
neuroendocrine gland | 2.97e-14 | 4 |
pineal body | 4.97e-13 | 2 |
regional part of epithalamus | 4.97e-13 | 2 |
secretory circumventricular organ | 4.97e-13 | 2 |
circumventricular organ | 4.97e-13 | 2 |
epithalamus | 4.97e-13 | 2 |
diencephalon | 2.39e-08 | 7 |
future diencephalon | 2.39e-08 | 7 |
penis | 1.20e-07 | 1 |
intromittent organ | 1.20e-07 | 1 |
lateral plate mesenchyme | 1.20e-07 | 1 |
undifferentiated genital tubercle | 1.20e-07 | 1 |
somatopleure | 1.20e-07 | 1 |
cranial nerve II | 1.27e-07 | 1 |
cranial nerve | 1.27e-07 | 1 |
nerve trunk | 1.27e-07 | 1 |
nerve connecting eye with brain | 1.27e-07 | 1 |
nerve | 1.27e-07 | 1 |
retinal neural layer | 1.27e-07 | 1 |
presumptive neural retina | 1.27e-07 | 1 |
uterus or analog | 4.89e-07 | 1 |
regional part of diencephalon | 6.22e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
bone marrow cancer | 1.06e-07 | 1 |
myeloma | 1.06e-07 | 1 |
acute leukemia | 3.41e-07 | 1 |