FFCP PHASE1:Hg19::chr14:23755297..23755350,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr14:23755297..23755350,-
|short_description=p1@HOMEZ
|description=CAGE_peak_1_at_HOMEZ_5end
|association_with_transcript=0bp_to_ENST00000357460,ENST0000055827...") |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57594 | |EntrezGene=57594 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20164 | |HGNC=20164 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IX15 | |UniProt=Q8IX15 | ||
|association_with_transcript=0bp_to_ENST00000357460,ENST00000558278,NM_020834,uc001wja.2_5end | |||
|cluster_id=chr14:23755297..23755350,- | |||
|description=CAGE_peak_1_at_HOMEZ_5end | |||
|id=chr14:23755297..23755350,- | |||
|ontology_enrichment_celltype=CL:0000066!2.11e-12!254;CL:1000449!4.67e-09!16;CL:0002076!7.38e-08!43;CL:0002681!2.05e-07!13;CL:0002584!2.05e-07!13;CL:0000223!2.11e-07!59;CL:1000507!2.36e-07!12;CL:1000494!2.36e-07!12;CL:1000497!5.53e-07!18;CL:0002518!5.53e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:1000449;1.03e-08;15!CL:0002681;4.52e-07;12!CL:0002584;4.52e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.45e-12,253;CL:1000449,7.87e-09,15;CL:0002076,6.44e-08,42;CL:0000223,1.99e-07,58;CL:0002681,3.47e-07,12;CL:0002584,3.47e-07,12;CL:1000507,9.55e-07,10;CL:1000494,9.55e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000080!5.19e-10!18;UBERON:0002120!5.19e-10!18;UBERON:0004875!5.19e-10!18;UBERON:0005721!5.19e-10!18;UBERON:0005754!5.19e-10!18;UBERON:0007297!5.19e-10!18;UBERON:0006554!5.65e-10!44;UBERON:0001008!1.04e-09!45;UBERON:0003887!1.26e-09!21;UBERON:0005177!1.94e-09!107;UBERON:0006555!2.16e-09!17;UBERON:0005103!2.16e-09!17;UBERON:0000083!2.16e-09!17;UBERON:0009201!2.16e-09!17;UBERON:0004819!2.16e-09!17;UBERON:0006553!2.16e-09!17;UBERON:0003074!2.16e-09!17;UBERON:0003060!2.16e-09!17;UBERON:0002113!2.28e-09!27;UBERON:0003918!2.28e-09!27;UBERON:0005095!2.28e-09!27;UBERON:0007687!2.28e-09!27;UBERON:0000489!2.64e-09!32;UBERON:0004211!4.67e-09!16;UBERON:0001285!4.67e-09!16;UBERON:0007684!4.67e-09!16;UBERON:0003220!4.67e-09!16;UBERON:0004208!4.67e-09!16;UBERON:0009569!8.06e-09!113;UBERON:0004876!2.08e-08!20;UBERON:0004119!2.68e-08!169;UBERON:0000925!2.68e-08!169;UBERON:0006595!2.68e-08!169;UBERON:0001225!2.05e-07!13;UBERON:0008987!2.05e-07!13;UBERON:0009773!2.36e-07!12;UBERON:0001231!2.36e-07!12;UBERON:0004810!2.36e-07!12;UBERON:0005172!3.46e-07!55;UBERON:0005173!3.46e-07!55;UBERON:0003103!4.63e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;6.29e-11;30!UBERON:0001008;6.29e-11;30!UBERON:0006555;1.03e-08;15!UBERON:0004819;1.03e-08;15!UBERON:0001285;1.03e-08;15!UBERON:0007684;1.03e-08;15!UBERON:0000489;3.17e-08;29!UBERON:0002113;3.62e-08;24!UBERON:0011143;3.62e-08;24!UBERON:0001225;4.52e-07;12!UBERON:0008987;4.52e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006554,7.85e-10,47;UBERON:0001008,1.38e-09,48;UBERON:0005177,2.74e-09,101;UBERON:0006555,3.66e-09,16;UBERON:0004819,3.66e-09,16;UBERON:0002113,4.17e-09,26;UBERON:0003918,4.17e-09,26;UBERON:0011143,4.17e-09,26;UBERON:0005095,4.17e-09,26;UBERON:0007687,4.17e-09,26;UBERON:0000489,4.84e-09,31;UBERON:0004211,7.87e-09,15;UBERON:0009773,7.87e-09,15;UBERON:0001231,7.87e-09,15;UBERON:0001285,7.87e-09,15;UBERON:0007684,7.87e-09,15;UBERON:0004208,7.87e-09,15;UBERON:0009569,8.07e-09,112;UBERON:0004119,2.37e-08,160;UBERON:0000925,2.37e-08,160;UBERON:0006595,2.37e-08,160;UBERON:0001225,3.47e-07,12;UBERON:0008987,3.47e-07,12;UBERON:0005172,5.90e-07,54;UBERON:0005173,5.90e-07,54;UBERON:0001444,6.32e-07,49;UBERON:0003103,7.66e-07,68;UBERON:0004810,9.55e-07,10 | |||
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| ||
|short_description=p1@HOMEZ | |||
}} | }} |
Latest revision as of 09:16, 19 September 2015
Short description: | p1@HOMEZ |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOMEZ_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000357460, ENST00000558278, NM_020834, uc001wja.2_5end |
EntrezGene: | HOMEZ |
HGNC: | 20164 |
UniProt: | Q8IX15 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.45e-12 | 253 |
epithelial cell of nephron | 7.87e-09 | 15 |
endo-epithelial cell | 6.44e-08 | 42 |
endodermal cell | 1.99e-07 | 58 |
kidney cortical cell | 3.47e-07 | 12 |
renal cortical epithelial cell | 3.47e-07 | 12 |
kidney tubule cell | 9.55e-07 | 10 |
nephron tubule epithelial cell | 9.55e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
urinary system structure | 7.85e-10 | 47 |
renal system | 1.38e-09 | 48 |
trunk region element | 2.74e-09 | 101 |
excretory tube | 3.66e-09 | 16 |
kidney epithelium | 3.66e-09 | 16 |
kidney | 4.17e-09 | 26 |
kidney mesenchyme | 4.17e-09 | 26 |
upper urinary tract | 4.17e-09 | 26 |
kidney rudiment | 4.17e-09 | 26 |
kidney field | 4.17e-09 | 26 |
cavitated compound organ | 4.84e-09 | 31 |
nephron epithelium | 7.87e-09 | 15 |
renal tubule | 7.87e-09 | 15 |
nephron tubule | 7.87e-09 | 15 |
nephron | 7.87e-09 | 15 |
uriniferous tubule | 7.87e-09 | 15 |
nephrogenic mesenchyme | 7.87e-09 | 15 |
subdivision of trunk | 8.07e-09 | 112 |
endoderm-derived structure | 2.37e-08 | 160 |
endoderm | 2.37e-08 | 160 |
presumptive endoderm | 2.37e-08 | 160 |
cortex of kidney | 3.47e-07 | 12 |
renal parenchyma | 3.47e-07 | 12 |
abdomen element | 5.90e-07 | 54 |
abdominal segment element | 5.90e-07 | 54 |
subdivision of head | 6.32e-07 | 49 |
compound organ | 7.66e-07 | 68 |
nephron tubule epithelium | 9.55e-07 | 10 |