FFCP PHASE1:Hg19::chr2:241375200..241375214,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2817 | |EntrezGene=2817 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4449 | |HGNC=4449 | ||
|TSSclassifier=strong | |||
|UniProt=P35052 | |UniProt=P35052 | ||
|association_with_transcript=85bp_to_NM_002081,uc002vyw.3_5end | |association_with_transcript=85bp_to_NM_002081,uc002vyw.3_5end | ||
|cluster_id=chr2:241375200..241375214,+ | |||
|coexpression_cluster_id=C1899 | |||
|description=CAGE_peak_4_at_GPC1_5end | |description=CAGE_peak_4_at_GPC1_5end | ||
|id=chr2:241375200..241375214,+ | |id=chr2:241375200..241375214,+ | ||
|ontology_enrichment_celltype=CL:0000055!6.09e-26!180;CL:0000057!8.41e-18!75;CL:0000220!4.65e-17!246;CL:0002321!1.21e-16!248;CL:0000183!3.53e-08!59;CL:0000680!4.48e-08!57;CL:0000056!4.48e-08!57;CL:0000355!4.48e-08!57;CL:0000222!6.00e-08!119;CL:0000066!9.31e-08!254;CL:0000548!2.22e-07!679;CL:0000004!2.22e-07!679;CL:0000255!2.22e-07!679;CL:0000187!3.28e-07!54;CL:0000393!6.39e-07!60;CL:0000211!6.39e-07!60;CL:0000012!8.95e-07!682 | |ontology_enrichment_celltype=CL:0000055!6.09e-26!180;CL:0000057!8.41e-18!75;CL:0000220!4.65e-17!246;CL:0002321!1.21e-16!248;CL:0000183!3.53e-08!59;CL:0000680!4.48e-08!57;CL:0000056!4.48e-08!57;CL:0000355!4.48e-08!57;CL:0000222!6.00e-08!119;CL:0000066!9.31e-08!254;CL:0000548!2.22e-07!679;CL:0000004!2.22e-07!679;CL:0000255!2.22e-07!679;CL:0000187!3.28e-07!54;CL:0000393!6.39e-07!60;CL:0000211!6.39e-07!60;CL:0000012!8.95e-07!682 | ||
|ontology_enrichment_celltype_v019=CL:0000057;1.83e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.95e-18,76;CL:0002321,2.17e-13,250;CL:0000680,8.50e-08,58;CL:0000056,8.50e-08,58;CL:0000355,8.50e-08,58;CL:0000187,6.75e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!9.56e-22!365;UBERON:0000481!1.58e-16!347;UBERON:0003102!6.79e-16!95;UBERON:0005256!1.08e-13!143;UBERON:0000119!1.10e-12!312;UBERON:0000468!1.40e-12!659;UBERON:0000483!3.08e-12!309;UBERON:0000486!5.58e-12!82;UBERON:0000914!1.64e-11!83;UBERON:0002329!1.64e-11!83;UBERON:0003077!1.64e-11!83;UBERON:0003059!1.64e-11!83;UBERON:0007282!1.64e-11!83;UBERON:0009618!1.64e-11!83;UBERON:0007285!1.64e-11!83;UBERON:0002100!2.25e-11!216;UBERON:0003104!5.29e-11!238;UBERON:0009142!5.29e-11!238;UBERON:0000467!5.34e-11!625;UBERON:0000480!9.33e-11!626;UBERON:0004290!2.83e-09!70;UBERON:0000064!1.50e-08!219;UBERON:0001134!5.81e-08!61;UBERON:0002036!5.81e-08!61;UBERON:0003082!5.81e-08!61;UBERON:0002385!1.11e-07!63;UBERON:0001015!1.11e-07!63;UBERON:0000383!1.11e-07!63;UBERON:0000477!1.22e-07!286;UBERON:0002199!1.64e-07!45;UBERON:0002416!1.64e-07!45;UBERON:0001444!3.77e-07!48;UBERON:0002050!4.03e-07!605;UBERON:0005423!4.03e-07!605;UBERON:0000923!4.44e-07!604;UBERON:0005291!4.44e-07!604;UBERON:0006598!4.44e-07!604;UBERON:0002532!4.44e-07!604;UBERON:0000922!8.64e-07!612 | |ontology_enrichment_uberon=UBERON:0000475!9.56e-22!365;UBERON:0000481!1.58e-16!347;UBERON:0003102!6.79e-16!95;UBERON:0005256!1.08e-13!143;UBERON:0000119!1.10e-12!312;UBERON:0000468!1.40e-12!659;UBERON:0000483!3.08e-12!309;UBERON:0000486!5.58e-12!82;UBERON:0000914!1.64e-11!83;UBERON:0002329!1.64e-11!83;UBERON:0003077!1.64e-11!83;UBERON:0003059!1.64e-11!83;UBERON:0007282!1.64e-11!83;UBERON:0009618!1.64e-11!83;UBERON:0007285!1.64e-11!83;UBERON:0002100!2.25e-11!216;UBERON:0003104!5.29e-11!238;UBERON:0009142!5.29e-11!238;UBERON:0000467!5.34e-11!625;UBERON:0000480!9.33e-11!626;UBERON:0004290!2.83e-09!70;UBERON:0000064!1.50e-08!219;UBERON:0001134!5.81e-08!61;UBERON:0002036!5.81e-08!61;UBERON:0003082!5.81e-08!61;UBERON:0002385!1.11e-07!63;UBERON:0001015!1.11e-07!63;UBERON:0000383!1.11e-07!63;UBERON:0000477!1.22e-07!286;UBERON:0002199!1.64e-07!45;UBERON:0002416!1.64e-07!45;UBERON:0001444!3.77e-07!48;UBERON:0002050!4.03e-07!605;UBERON:0005423!4.03e-07!605;UBERON:0000923!4.44e-07!604;UBERON:0005291!4.44e-07!604;UBERON:0006598!4.44e-07!604;UBERON:0002532!4.44e-07!604;UBERON:0000922!8.64e-07!612 | ||
|ontology_enrichment_uberon_v019= | |||
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|phase1_expression=2.72517568905835,2.99740733447376,2.53717927372748,8.00586386825043,2.23480547213644,3.48935409640147,2.53299878168311,6.94891860769514,7.05201196139564,2.7030733015166,4.18680700783456,2.18441372130172,4.74780560811216,3.34169152992126,5.30235801164665,4.03395087871065,6.62963980826375,5.11217063271161,4.39139518911456,2.83178433576612,1.63200552995402,2.82109249330279,3.14859585844162,4.10623275218653,2.88748071068046,0,0,0,0,0,0.154816123316076,5.51652734687356,2.71085326900425,5.54631015250181,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821127996921047,0,0,0,0,8.04841031644363,3.83587685530591,2.53007406669196,2.50668955317945,5.64901423947212,0.795285947051099,1.45990461090791,3.40325341790644,1.55210578223795,2.10803485663503,0.916853528483988,5.82872461268068,8.15725774125745,0,0,0.132957960518865,0,0,0,0.79504962946682,2.58070378531837,1.73570250803797,0.56530794192401,1.67799774483962,0.275118041940067,1.25396979922086,0.775250277507987,2.49036383880697,1.00416183829401,0.805658634218294,0,1.95249646038536,0.367663080345869,0.81014194788176,0.17859945656816,0.22452937262617,0.450445921933289,1.53316637465883,0,1.64881569537367,0,0,8.72188104285069,3.97577561356255,3.92554586160197,2.78059279707759,7.17091551872034,2.12801029319014,7.28880880184999,2.1349799145941,5.18001851676036,2.8008993185979,2.55950276932407,4.08654757783647,3.48122083583342,5.76175924479999,3.28050004567315,2.49728061464256,3.4228309292667,3.88566569434683,1.05691048779388,0.971237666208789,0.842704840213491,2.24569588380383,0.982674538494144,3.82305390350332,4.75201142912821,6.18167323196392,16.3829045148845,15.8095991199572,2.35670559535693,1.37630371859161,1.10825646193673,7.46261955497424,5.51678032438235,5.10809400282429,3.74326204428069,6.81680615617675,5.76604949810132,2.54318281391474,10.8032794590385,2.67936576019941,9.01741890159702,14.3309979375324,7.59493495085698,4.48210223741514,5.04867548488229,1.84099797284599,0.969876340912871,19.5255275884138,7.2541510723901,5.25637836162512,5.9910864480622,4.63668405004419,6.30970109855808,0.121973706129595,0.397589304964456,0.464775771478074,1.14027160516907,0.756962552626885,0,4.69348596989448,13.5080597020506,11.0507937081984,3.25057549622385,7.21879481669586,2.83936320095625,3.37169380156203,3.13314338848527,2.09558548191549,3.4860711054785,1.42362371466658,2.15730093056263,0.98110732562673,2.69323009862473,0.738155454624648,7.01208869017229,8.6430542379594,7.3504355692771,0,1.96565443335525,2.95394953340702,0,0.245976877086227,1.88724591328378,5.81676512665715,3.37205259772859,1.3068766413512,3.24059558054854,1.95484983186195,15.5990217791937,1.44331342025273,4.40535538905292,2.11335649624479,0,0,0,0,1.71697232418975,0,0,0.148631162288728,0.93733833986777,5.54341023056236,4.25325291727159,3.76145795351963,4.94077695473735,9.20118429996507,0,0,0.207328115540772,0.144119953416961,0.25248486685276,0.825472625798197,2.67391897890794,1.17217447210047,3.4214489204541,0.514137463516618,2.10240140490742,0.285826432630578,3.47606361470618,1.74384027533312,3.6669142910475,1.80980402060889,64.3781602533388,9.298330278116,7.97814349754611,15.6011155367049,9.25946547343712,8.5109479213967,8.52550972851518,5.14720777169331,11.9376753186117,4.93944202068461,4.88604276440603,7.46323092359346,1.58390374586686,2.1100756394171,2.61460037580088,3.39908170018994,0,0,0,3.35474797688216,3.44585807502342,0,4.1986578933598,5.34238438630997,4.1184021545176,0,0,0,0,4.8277978602268,2.60279707715243,4.63973287666617,1.34013012267479,2.55175500661265,0,0,0,4.04881922673162,7.50255781589516,2.44138521329762,1.66376689224646,2.67643483195743,6.30809660135739,2.57711112983969,3.31040709700491,4.5481500811197,1.03473071292505,5.97803038681893,3.13427586520895,3.38846096425523,11.5522682903017,9.60801586670397,0,0,0,2.72814814301633,6.65741758041988,2.41912234663744,6.94701861892575,3.37616341233737,5.3325417942284,9.61043619417757,6.14048698880044,5.62988724002626,10.3892646511494,1.23367755042124,4.97172830876756,2.38168752440047,2.07701771673448,2.90525946149898,1.32945394550784,12.6319076291069,2.30202472339741,5.51109351190112,7.28364672026868,12.4568194211453,2.70719767744447,1.00119938235739,3.92174884588428,2.92278449306521,1.05551628892876,3.4120015221269,0.510281115829547,0.215915916102139,1.54227252690289,2.70946437543853,3.51182841698397,2.03901018436031,0.831076008928724,1.79099803777743,0,0,3.33385162651306,4.26419039409617,3.57916234130733,0.618246069886334,4.48690377609883,1.98022799809411,1.72279661398852,4.55042172225565,8.03419649220798,4.44685304143761,3.54311819363682,5.2191249406884,2.61889487720608,2.57808587683857,2.90033387828457,3.23861184181183,8.1019152438531,5.2891172915513,6.91884242514382,3.31793052485919,6.2717824130441,0.929691098594572,13.8517432605482,0.6970372701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| ||
|short_description=p4@GPC1 | |short_description=p4@GPC1 | ||
}} | }} |
Latest revision as of 07:25, 16 September 2015
Short description: | p4@GPC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GPC1_5end |
Coexpression cluster: | C1899_Mesenchymal_Fibroblast_Urothelial_Smooth_mucinous_Pericytes_Keratocytes |
Association with transcript: | 85bp_to_NM_002081, uc002vyw.3_5end |
EntrezGene: | GPC1 |
HGNC: | 4449 |
UniProt: | P35052 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.95e-18 | 76 |
embryonic cell | 2.17e-13 | 250 |
muscle precursor cell | 8.50e-08 | 58 |
myoblast | 8.50e-08 | 58 |
multi-potent skeletal muscle stem cell | 8.50e-08 | 58 |
muscle cell | 6.75e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
surface structure | 9.46e-15 | 99 |
multilaminar epithelium | 2.24e-11 | 83 |
mesenchyme | 7.82e-10 | 160 |
entire embryonic mesenchyme | 7.82e-10 | 160 |
trunk mesenchyme | 3.82e-09 | 122 |
dense mesenchyme tissue | 5.24e-09 | 73 |
cell layer | 5.36e-09 | 309 |
epithelial vesicle | 8.44e-09 | 78 |
somite | 9.88e-09 | 71 |
presomitic mesoderm | 9.88e-09 | 71 |
presumptive segmental plate | 9.88e-09 | 71 |
dermomyotome | 9.88e-09 | 71 |
trunk paraxial mesoderm | 9.88e-09 | 71 |
paraxial mesoderm | 1.23e-08 | 72 |
presumptive paraxial mesoderm | 1.23e-08 | 72 |
epithelium | 1.32e-08 | 306 |
skeletal muscle tissue | 8.09e-08 | 62 |
striated muscle tissue | 8.09e-08 | 62 |
myotome | 8.09e-08 | 62 |
muscle tissue | 4.49e-07 | 64 |
musculature | 4.49e-07 | 64 |
musculature of body | 4.49e-07 | 64 |
integument | 4.99e-07 | 46 |
integumental system | 4.99e-07 | 46 |
organ component layer | 5.30e-07 | 66 |
head | 5.41e-07 | 56 |
trunk | 5.92e-07 | 199 |