FFCP PHASE1:Hg19::chrX:139866071..139866091,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1038 | |EntrezGene=1038 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=1798 | |HGNC=1798 | ||
|TSSclassifier=strong | |||
|UniProt=P51861 | |UniProt=P51861 | ||
|association_with_transcript=491bp_to_M16965_5end | |association_with_transcript=491bp_to_M16965_5end | ||
|cluster_id=chrX:139866071..139866091,- | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_4_at_CDR1_5end | |description=CAGE_peak_4_at_CDR1_5end | ||
|id=chrX:139866071..139866091,- | |id=chrX:139866071..139866091,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002521;6.78e-08;3!CL:0000136;5.11e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002521,8.29e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0006215;3.29e-60;3!UBERON:0000358;2.08e-21;1!UBERON:0006222;5.16e-21;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!9.94e-32!57;UBERON:0005068!9.94e-32!57;UBERON:0006241!9.94e-32!57;UBERON:0007135!9.94e-32!57;UBERON:0002616!1.86e-30!59;UBERON:0002346!1.37e-29!90;UBERON:0003075!2.58e-28!86;UBERON:0007284!2.58e-28!86;UBERON:0000955!1.12e-25!69;UBERON:0006238!1.12e-25!69;UBERON:0002780!5.53e-25!41;UBERON:0001890!5.53e-25!41;UBERON:0006240!5.53e-25!41;UBERON:0003080!3.33e-24!42;UBERON:0002020!4.32e-24!34;UBERON:0003528!4.32e-24!34;UBERON:0001893!6.04e-24!34;UBERON:0002791!8.72e-23!33;UBERON:0001017!9.38e-23!82;UBERON:0005743!1.50e-22!86;UBERON:0001869!2.89e-21!32;UBERON:0003056!5.73e-21!61;UBERON:0000073!1.82e-20!94;UBERON:0001016!1.82e-20!94;UBERON:0002619!2.22e-19!22;UBERON:0007023!2.97e-19!115;UBERON:0001950!6.91e-19!20;UBERON:0000153!2.17e-18!129;UBERON:0007811!2.17e-18!129;UBERON:0000033!5.00e-17!123;UBERON:0000956!1.46e-16!25;UBERON:0000203!1.46e-16!25;UBERON:0000483!1.21e-13!309;UBERON:0000924!1.66e-13!173;UBERON:0006601!1.66e-13!173;UBERON:0000119!2.50e-13!312;UBERON:0004121!1.52e-12!169;UBERON:0000475!1.07e-11!365;UBERON:0000477!5.70e-10!286;UBERON:0000025!1.77e-09!194;UBERON:0002308!3.92e-09!9;UBERON:0000125!3.92e-09!9;UBERON:0004733!4.99e-09!12;UBERON:0002028!4.99e-09!12;UBERON:0007277!4.99e-09!12;UBERON:0003076!1.30e-08!15;UBERON:0003057!1.30e-08!15;UBERON:0000481!2.01e-08!347;UBERON:0000064!2.93e-08!219;UBERON:0004732!3.32e-08!13;UBERON:0004111!4.11e-08!241;UBERON:0000200!1.02e-07!6;UBERON:0001871!1.12e-07!7;UBERON:0002298!1.13e-07!8;UBERON:0002680!2.10e-07!9;UBERON:0001895!2.10e-07!9;UBERON:0010092!2.10e-07!9;UBERON:0002420!5.42e-07!9;UBERON:0007245!5.42e-07!9;UBERON:0010009!5.42e-07!9;UBERON:0010011!5.42e-07!9;UBERON:0000454!5.42e-07!9;UBERON:0001872!9.61e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;1.45e-30;6!UBERON:0002680;1.20e-20;9!UBERON:0001895;1.20e-20;9!UBERON:0004733;1.14e-15;12!UBERON:0002028;1.14e-15;12!UBERON:0004732;1.61e-14;13!UBERON:0000073;7.35e-09;53!UBERON:0002616;7.35e-09;53!UBERON:0002190;6.78e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.13e-30,6;UBERON:0006215,1.13e-30,6;UBERON:0002680,1.02e-20,9;UBERON:0001895,1.02e-20,9;UBERON:0010092,1.02e-20,9;UBERON:0004733,1.00e-15,12;UBERON:0002028,1.00e-15,12;UBERON:0007277,1.00e-15,12;UBERON:0004732,1.44e-14,13;UBERON:0000073,3.12e-13,53;UBERON:0002616,3.12e-13,53;UBERON:0003076,1.02e-12,15;UBERON:0003057,1.02e-12,15;UBERON:0001049,1.56e-12,56;UBERON:0005068,1.56e-12,56;UBERON:0006241,1.56e-12,56;UBERON:0007135,1.56e-12,56;UBERON:0000955,3.45e-10,68;UBERON:0006238,3.45e-10,68;UBERON:0001017,1.42e-08,81;UBERON:0003075,1.42e-08,82;UBERON:0007284,1.42e-08,82;UBERON:0002346,3.58e-08,86;UBERON:0002190,8.29e-08,3;UBERON:0001016,1.02e-07,89;UBERON:0010371,9.68e-07,104 | |||
|phase1_expression=0.363356758541113,0.856402095563933,0,0,0.893922188854576,0,0,0,1.04474251279935,0,0,0,0,0,0,0,0,0.730310090387373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,0,0,0.221729397462564,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300476117813194,0,0,0.213557388818567,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0.384417447767103,0,0.321707842287215,0,0,0,0,0,0,0,0,0,0,0.182091168006717,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0.107420244868274,0.290033387828457,0.170453254832202,0.0890320356467374,0,0,0,0,0.464845549297286,0.31481234683064,0,0,0,0,0,0.143124886741991,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0.354761064070598,0.211107635297664,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0.597743964753209,0,0,0,0,0,0,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0,0.583209226766509,0,0,0.482385754501632,1.52581736317083,2.10100593869327,13.0040952339561,0.438770794307945,0,0,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,1.40558667435203,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.90392296312213,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.547621515567972,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.681017030557878,0,0,0,0,0,0.242998226632099,0,0,0,0.105600336519406,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.26446520348538,0,0,0,0,0,0,0,0,0,1.08803560673895,0,0.306345576763462,0,0,0,0.244052529803926,0.3755727921195,0,0.221858103073705,0.248385611765534,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0.889811221596536,0,0,0.15543720058278,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0.358177682162975,0,0,0,0,0,0,0,0,0.829550616910385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0.850299680406731,0.123935764259002,0,0,0,0,0,0,0.192687675289379,0,1.43670473151436,0.205116364240755,0.756215088665154,0.138314504928436,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,1.44680757550829,0.317079050969534,0.546974809018219,0.548257766857182,0,0,0,0,0,0,0,0,0,0,0.339848664884159,0.394636641377094,0,0.111231401892069,0.078493092850514,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0.860037498908708,0,0.0679914901909147,0.872701380680755,0,0,0,0,0.126166424835079,0,0,0.101988829741982,0,0,0,0,0,0.829169439458779,0.310298987585686,0,0,0.129177819672012,0.0620747142958579,0,0,0.202117188958219,0,0,0,0.0717222053926763,0.332660356546013,0,0,0,0,2.34640942403454,0,0.406896178315738,0,0,0 | |phase1_expression=0.363356758541113,0.856402095563933,0,0,0.893922188854576,0,0,0,1.04474251279935,0,0,0,0,0,0,0,0,0.730310090387373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,0,0,0.221729397462564,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300476117813194,0,0,0.213557388818567,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0.384417447767103,0,0.321707842287215,0,0,0,0,0,0,0,0,0,0,0.182091168006717,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0.107420244868274,0.290033387828457,0.170453254832202,0.0890320356467374,0,0,0,0,0.464845549297286,0.31481234683064,0,0,0,0,0,0.143124886741991,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0.354761064070598,0.211107635297664,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0.597743964753209,0,0,0,0,0,0,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0,0.583209226766509,0,0,0.482385754501632,1.52581736317083,2.10100593869327,13.0040952339561,0.438770794307945,0,0,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,1.40558667435203,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.90392296312213,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.547621515567972,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.681017030557878,0,0,0,0,0,0.242998226632099,0,0,0,0.105600336519406,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.26446520348538,0,0,0,0,0,0,0,0,0,1.08803560673895,0,0.306345576763462,0,0,0,0.244052529803926,0.3755727921195,0,0.221858103073705,0.248385611765534,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0.889811221596536,0,0,0.15543720058278,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0.358177682162975,0,0,0,0,0,0,0,0,0.829550616910385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0.850299680406731,0.123935764259002,0,0,0,0,0,0,0.192687675289379,0,1.43670473151436,0.205116364240755,0.756215088665154,0.138314504928436,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,1.44680757550829,0.317079050969534,0.546974809018219,0.548257766857182,0,0,0,0,0,0,0,0,0,0,0.339848664884159,0.394636641377094,0,0.111231401892069,0.078493092850514,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0.860037498908708,0,0.0679914901909147,0.872701380680755,0,0,0,0,0.126166424835079,0,0,0.101988829741982,0,0,0,0,0,0.829169439458779,0.310298987585686,0,0,0.129177819672012,0.0620747142958579,0,0,0.202117188958219,0,0,0,0.0717222053926763,0.332660356546013,0,0,0,0,2.34640942403454,0,0.406896178315738,0,0,0 | ||
|short_description=p4@CDR1 | |short_description=p4@CDR1 | ||
}} | }} |
Latest revision as of 19:09, 19 September 2015
Short description: | p4@CDR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CDR1_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 491bp_to_M16965_5end |
EntrezGene: | CDR1 |
HGNC: | 1798 |
UniProt: | P51861 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
subcutaneous fat cell | 8.29e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 1.13e-30 | 6 |
rhombic lip | 1.13e-30 | 6 |
regional part of metencephalon | 1.02e-20 | 9 |
metencephalon | 1.02e-20 | 9 |
future metencephalon | 1.02e-20 | 9 |
segmental subdivision of hindbrain | 1.00e-15 | 12 |
hindbrain | 1.00e-15 | 12 |
presumptive hindbrain | 1.00e-15 | 12 |
segmental subdivision of nervous system | 1.44e-14 | 13 |
regional part of nervous system | 3.12e-13 | 53 |
regional part of brain | 3.12e-13 | 53 |
posterior neural tube | 1.02e-12 | 15 |
chordal neural plate | 1.02e-12 | 15 |
neural tube | 1.56e-12 | 56 |
neural rod | 1.56e-12 | 56 |
future spinal cord | 1.56e-12 | 56 |
neural keel | 1.56e-12 | 56 |
brain | 3.45e-10 | 68 |
future brain | 3.45e-10 | 68 |
central nervous system | 1.42e-08 | 81 |
neural plate | 1.42e-08 | 82 |
presumptive neural plate | 1.42e-08 | 82 |
neurectoderm | 3.58e-08 | 86 |
subcutaneous adipose tissue | 8.29e-08 | 3 |
nervous system | 1.02e-07 | 89 |
ecto-epithelium | 9.68e-07 | 104 |