FFCP PHASE1:Hg19::chr15:49256110..49256122,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:49256110..49256122,-
|short_description=p11@SHC4
|description=CAGE_peak_11_at_SHC4_5end
|association_with_transcript=-469bp_to_ENST00000332408,NM_203349,u...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=399694 | |EntrezGene=399694 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16743 | |HGNC=16743 | ||
|TSSclassifier=strong | |||
|UniProt=Q6S5L8 | |UniProt=Q6S5L8 | ||
|association_with_transcript=-469bp_to_ENST00000332408,NM_203349,uc001zxb.1_5end | |||
|cluster_id=chr15:49256110..49256122,- | |||
|description=CAGE_peak_11_at_SHC4_5end | |||
|id=chr15:49256110..49256122,- | |||
|ontology_enrichment_celltype=CL:0000133!7.81e-11!59;CL:0000333!7.57e-10!41;CL:0000221!1.24e-09!71;CL:0000148!8.34e-08!10;CL:0000541!8.34e-08!10 | |||
|ontology_enrichment_celltype_v019=CL:0000148;3.83e-32;10!CL:0002567;8.98e-28;3!CL:0000147;7.15e-23;14!CL:0000710;6.68e-16;20!CL:0000075;1.13e-11;27!CL:0002077;3.26e-08;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.79e-32,10;CL:0000541,1.79e-32,10;CL:0002567,5.69e-28,3;CL:0000147,4.17e-23,14;CL:0000710,4.61e-16,20;CL:0000333,1.27e-12,41;CL:0000075,8.64e-12,27;CL:0000133,6.59e-11,59;CL:0002077,2.86e-09,34;CL:0000221,9.08e-09,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.57e-18!94;UBERON:0001016!1.57e-18!94;UBERON:0001017!9.26e-17!82;UBERON:0005743!2.55e-16!86;UBERON:0000924!2.11e-15!173;UBERON:0006601!2.11e-15!173;UBERON:0001049!5.37e-15!57;UBERON:0005068!5.37e-15!57;UBERON:0006241!5.37e-15!57;UBERON:0007135!5.37e-15!57;UBERON:0002346!1.30e-14!90;UBERON:0004121!5.14e-14!169;UBERON:0003075!4.92e-13!86;UBERON:0007284!4.92e-13!86;UBERON:0000955!3.86e-12!69;UBERON:0006238!3.86e-12!69;UBERON:0002780!7.32e-12!41;UBERON:0001890!7.32e-12!41;UBERON:0006240!7.32e-12!41;UBERON:0003080!2.11e-11!42;UBERON:0002616!5.99e-11!59;UBERON:0001893!4.96e-10!34;UBERON:0003056!1.82e-09!61;UBERON:0002791!2.62e-09!33;UBERON:0000033!3.02e-09!123;UBERON:0002020!4.03e-09!34;UBERON:0003528!4.03e-09!34;UBERON:0001869!8.16e-09!32;UBERON:0000956!1.74e-08!25;UBERON:0000203!1.74e-08!25;UBERON:0001950!1.76e-08!20;UBERON:0000153!3.11e-08!129;UBERON:0007811!3.11e-08!129;UBERON:0000483!5.47e-08!309;UBERON:0000025!7.89e-08!194;UBERON:0004111!8.83e-08!241;UBERON:0000119!1.05e-07!312;UBERON:0007023!1.53e-07!115;UBERON:0002619!2.13e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;2.06e-19;2!UBERON:0002757;2.06e-19;2!UBERON:0010134;2.06e-19;2!UBERON:0005408;2.06e-19;2!UBERON:0001899;2.06e-19;2!UBERON:0003296;3.53e-10;4!UBERON:0010133;3.53e-10;4!UBERON:0002784;3.53e-10;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,3.13e-19,2;UBERON:0002757,3.13e-19,2;UBERON:0010134,3.13e-19,2;UBERON:0005408,3.13e-19,2;UBERON:0001899,3.13e-19,2;UBERON:0003296,4.35e-10,4;UBERON:0010133,4.35e-10,4;UBERON:0002784,4.35e-10,4 | |||
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| ||
|short_description=p11@SHC4 | |||
}} | }} |
Latest revision as of 22:23, 17 September 2015
Short description: | p11@SHC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_SHC4_5end |
Coexpression cluster: | NA |
Association with transcript: | -469bp_to_ENST00000332408, NM_203349, uc001zxb.1_5end |
EntrezGene: | SHC4 |
HGNC: | 16743 |
UniProt: | Q6S5L8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.79e-32 | 10 |
melanoblast | 1.79e-32 | 10 |
light melanocyte | 5.69e-28 | 3 |
pigment cell | 4.17e-23 | 14 |
neurecto-epithelial cell | 4.61e-16 | 20 |
migratory neural crest cell | 1.27e-12 | 41 |
columnar/cuboidal epithelial cell | 8.64e-12 | 27 |
neurectodermal cell | 6.59e-11 | 59 |
ecto-epithelial cell | 2.86e-09 | 34 |
ectodermal cell | 9.08e-09 | 72 |
Ontology term | p-value | n |
---|---|---|
pineal body | 3.13e-19 | 2 |
regional part of epithalamus | 3.13e-19 | 2 |
secretory circumventricular organ | 3.13e-19 | 2 |
circumventricular organ | 3.13e-19 | 2 |
epithalamus | 3.13e-19 | 2 |
gland of diencephalon | 4.35e-10 | 4 |
neuroendocrine gland | 4.35e-10 | 4 |
regional part of diencephalon | 4.35e-10 | 4 |