FFCP PHASE1:Hg19::chr8:16425118..16425128,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4481 | |EntrezGene=4481 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7376 | |HGNC=7376 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-119bp_to_ENST00000522130_5end | |association_with_transcript=-119bp_to_ENST00000522130_5end | ||
|cluster_id=chr8:16425118..16425128,- | |||
|coexpression_cluster_id=C420 | |||
|description=CAGE_peak_12_at_MSR1_5end | |description=CAGE_peak_12_at_MSR1_5end | ||
|id=chr8:16425118..16425128,- | |id=chr8:16425118..16425128,- | ||
|ontology_enrichment_celltype=CL:0005020!1.49e-15!6;CL:0002138!1.49e-15!6;CL:0005022!1.49e-15!6;CL:0002139!1.08e-10!24;CL:0000115!3.54e-09!35;CL:0002573!5.09e-09!2;CL:0002078!4.68e-07!44 | |ontology_enrichment_celltype=CL:0005020!1.49e-15!6;CL:0002138!1.49e-15!6;CL:0005022!1.49e-15!6;CL:0002139!1.08e-10!24;CL:0000115!3.54e-09!35;CL:0002573!5.09e-09!2;CL:0002078!4.68e-07!44 | ||
|ontology_enrichment_celltype_v019=CL:0002573;1.09e-30;2!CL:0000222;3.28e-23;1!CL:0002138;1.31e-15;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002573,1.09e-30,2;CL:0005020,1.05e-15,6;CL:0002138,1.05e-15,6;CL:0005022,1.05e-15,6 | |||
|ontology_enrichment_development_v019=UBERON:0006215;4.17e-30;3!CL:0005022;1.31e-15;6 | |||
|ontology_enrichment_disease=DOID:7!6.72e-08!39;DOID:0060085!3.78e-07!1;DOID:3165!3.78e-07!1;DOID:0060121!3.78e-07!1;DOID:2438!3.78e-07!1;DOID:4418!3.78e-07!1;DOID:5662!9.51e-07!1 | |ontology_enrichment_disease=DOID:7!6.72e-08!39;DOID:0060085!3.78e-07!1;DOID:3165!3.78e-07!1;DOID:0060121!3.78e-07!1;DOID:2438!3.78e-07!1;DOID:4418!3.78e-07!1;DOID:5662!9.51e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:4556;1.21e-08;3 | |||
|ontology_enrichment_disease_v019_2=DOID:4556,1.40e-08,3 | |||
|ontology_enrichment_uberon=UBERON:0001473!1.07e-11!8;UBERON:0004536!1.07e-11!8;UBERON:0006558!1.07e-11!8;UBERON:0002046!1.66e-10!5;UBERON:0004117!1.66e-10!5;UBERON:0007689!1.66e-10!5;UBERON:0007123!1.66e-10!5;UBERON:0003091!1.66e-10!5;UBERON:0002465!2.23e-09!10;UBERON:0009722!4.30e-08!11;UBERON:0007690!4.30e-08!11 | |ontology_enrichment_uberon=UBERON:0001473!1.07e-11!8;UBERON:0004536!1.07e-11!8;UBERON:0006558!1.07e-11!8;UBERON:0002046!1.66e-10!5;UBERON:0004117!1.66e-10!5;UBERON:0007689!1.66e-10!5;UBERON:0007123!1.66e-10!5;UBERON:0003091!1.66e-10!5;UBERON:0002465!2.23e-09!10;UBERON:0009722!4.30e-08!11;UBERON:0007690!4.30e-08!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0002037;1.31e-15;6!UBERON:0001473;5.83e-12;8!UBERON:0004536;5.83e-12;8!UBERON:0006558;5.83e-12;8!UBERON:0000010;6.22e-11;8!UBERON:0002680;9.69e-11;9!UBERON:0001895;9.69e-11;9!UBERON:0002465;9.23e-10;10!UBERON:0004733;2.75e-08;12!UBERON:0002028;2.75e-08;12!UBERON:0004732;1.02e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.13e-15,6;UBERON:0006215,1.13e-15,6;UBERON:0001473,4.94e-12,8;UBERON:0004536,4.94e-12,8;UBERON:0006558,4.94e-12,8;UBERON:0000010,6.22e-11,8;UBERON:0002680,8.79e-11,9;UBERON:0001895,8.79e-11,9;UBERON:0010092,8.79e-11,9;UBERON:0002465,8.09e-10,10;UBERON:0004733,2.55e-08,12;UBERON:0002028,2.55e-08,12;UBERON:0007277,2.55e-08,12;UBERON:0004732,9.51e-08,13;UBERON:0003076,7.86e-07,15;UBERON:0003057,7.86e-07,15 | |||
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|short_description=p12@MSR1 | |short_description=p12@MSR1 | ||
}} | }} |
Latest revision as of 03:32, 17 September 2015
Short description: | p12@MSR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_MSR1_5end |
Coexpression cluster: | C420_schwannoma_salivary_Mammary_skin_squamous_Smooth_cervical |
Association with transcript: | -119bp_to_ENST00000522130_5end |
EntrezGene: | MSR1 |
HGNC: | 7376 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Schwann cell | 1.09e-30 | 2 |
lymphangioblast | 1.05e-15 | 6 |
endothelial cell of lymphatic vessel | 1.05e-15 | 6 |
vascular lymphangioblast | 1.05e-15 | 6 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 1.13e-15 | 6 |
rhombic lip | 1.13e-15 | 6 |
lymphatic vessel | 4.94e-12 | 8 |
lymph vasculature | 4.94e-12 | 8 |
lymphatic part of lymphoid system | 4.94e-12 | 8 |
peripheral nervous system | 6.22e-11 | 8 |
regional part of metencephalon | 8.79e-11 | 9 |
metencephalon | 8.79e-11 | 9 |
future metencephalon | 8.79e-11 | 9 |
lymphoid system | 8.09e-10 | 10 |
segmental subdivision of hindbrain | 2.55e-08 | 12 |
hindbrain | 2.55e-08 | 12 |
presumptive hindbrain | 2.55e-08 | 12 |
segmental subdivision of nervous system | 9.51e-08 | 13 |
posterior neural tube | 7.86e-07 | 15 |
chordal neural plate | 7.86e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
lung large cell carcinoma | 1.40e-08 | 3 |