FFCP PHASE1:Hg19::chr19:18239200..18239212,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:18239200..18239212,+ | |||
|description=CAGE_peak_at_chr19:18239200..18239212,+ | |description=CAGE_peak_at_chr19:18239200..18239212,+ | ||
|id=chr19:18239200..18239212,+ | |id=chr19:18239200..18239212,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002127;2.37e-29;1!CL:0000911;2.37e-29;1!CL:0000814;2.37e-29;1!CL:0002593;2.05e-15;2!CL:0002595;6.04e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,2.37e-29,1;CL:0000914,2.37e-29,1;CL:0000911,2.37e-29,1;CL:0000814,2.37e-29,1;CL:0002042,2.37e-29,1;CL:0002039,2.37e-29,1;CL:0002040,2.37e-29,1;CL:0002041,2.37e-29,1;CL:0000893,2.05e-15,2;CL:0002489,2.05e-15,2;CL:0000809,2.05e-15,2;CL:0000808,2.05e-15,2;CL:0000894,2.05e-15,2;CL:0000806,2.05e-15,2;CL:0000807,2.05e-15,2;CL:0000805,2.05e-15,2;CL:0002425,2.05e-15,2;CL:0002593,2.37e-15,2;CL:0002595,6.39e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002425;2.05e-15;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.52e-25!115;UBERON:0001049!1.76e-12!57;UBERON:0005068!1.76e-12!57;UBERON:0006241!1.76e-12!57;UBERON:0007135!1.76e-12!57;UBERON:0002780!3.02e-12!41;UBERON:0001890!3.02e-12!41;UBERON:0006240!3.02e-12!41;UBERON:0003080!8.49e-12!42;UBERON:0001893!2.15e-11!34;UBERON:0001869!3.32e-11!32;UBERON:0002020!3.58e-11!34;UBERON:0003528!3.58e-11!34;UBERON:0002616!8.31e-11!59;UBERON:0002791!1.66e-10!33;UBERON:0000955!1.77e-10!69;UBERON:0006238!1.77e-10!69;UBERON:0002619!1.09e-09!22;UBERON:0001950!2.11e-09!20;UBERON:0001017!5.88e-09!82;UBERON:0000178!1.43e-08!15;UBERON:0000179!1.43e-08!15;UBERON:0000463!1.43e-08!15;UBERON:0002390!1.75e-08!102;UBERON:0003061!1.75e-08!102;UBERON:0005743!3.77e-08!86;UBERON:0000956!4.14e-08!25;UBERON:0000203!4.14e-08!25;UBERON:0002193!6.77e-07!112;UBERON:0000153!7.22e-07!129;UBERON:0007811!7.22e-07!129 | |ontology_enrichment_uberon=UBERON:0007023!3.52e-25!115;UBERON:0001049!1.76e-12!57;UBERON:0005068!1.76e-12!57;UBERON:0006241!1.76e-12!57;UBERON:0007135!1.76e-12!57;UBERON:0002780!3.02e-12!41;UBERON:0001890!3.02e-12!41;UBERON:0006240!3.02e-12!41;UBERON:0003080!8.49e-12!42;UBERON:0001893!2.15e-11!34;UBERON:0001869!3.32e-11!32;UBERON:0002020!3.58e-11!34;UBERON:0003528!3.58e-11!34;UBERON:0002616!8.31e-11!59;UBERON:0002791!1.66e-10!33;UBERON:0000955!1.77e-10!69;UBERON:0006238!1.77e-10!69;UBERON:0002619!1.09e-09!22;UBERON:0001950!2.11e-09!20;UBERON:0001017!5.88e-09!82;UBERON:0000178!1.43e-08!15;UBERON:0000179!1.43e-08!15;UBERON:0000463!1.43e-08!15;UBERON:0002390!1.75e-08!102;UBERON:0003061!1.75e-08!102;UBERON:0005743!3.77e-08!86;UBERON:0000956!4.14e-08!25;UBERON:0000203!4.14e-08!25;UBERON:0002193!6.77e-07!112;UBERON:0000153!7.22e-07!129;UBERON:0007811!7.22e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.07e-17;15!UBERON:0000179;1.07e-17;15!UBERON:0000463;1.07e-17;15!UBERON:0002771;1.24e-15;2!UBERON:0002456;2.05e-15;2!UBERON:0002390;2.61e-08;32!UBERON:0003834;6.04e-07;5!UBERON:0001533;6.04e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.10e-17,15;UBERON:0000179,1.10e-17,15;UBERON:0000463,1.10e-17,15;UBERON:0002771,1.15e-15,2;UBERON:0002456,2.37e-15,2;UBERON:0002370,2.26e-08,4;UBERON:0005058,2.26e-08,4;UBERON:0009113,2.26e-08,4;UBERON:0003295,2.26e-08,4;UBERON:0005562,2.26e-08,4;UBERON:0003834,6.39e-07,5;UBERON:0001533,6.39e-07,5 | |||
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|short_description=p@chr19:18239200..18239212,+ | |short_description=p@chr19:18239200..18239212,+ | ||
}} | }} |
Latest revision as of 05:01, 26 July 2015
Short description: | p@chr19:18239200..18239212, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:18239200..18239212, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 2.37e-29 | 1 |
immature NK T cell | 2.37e-29 | 1 |
effector T cell | 2.37e-29 | 1 |
mature NK T cell | 2.37e-29 | 1 |
immature NK T cell stage IV | 2.37e-29 | 1 |
immature NK T cell stage I | 2.37e-29 | 1 |
immature NK T cell stage II | 2.37e-29 | 1 |
immature NK T cell stage III | 2.37e-29 | 1 |
thymocyte | 2.05e-15 | 2 |
double negative thymocyte | 2.05e-15 | 2 |
double-positive, alpha-beta thymocyte | 2.05e-15 | 2 |
DN4 thymocyte | 2.05e-15 | 2 |
DN1 thymic pro-T cell | 2.05e-15 | 2 |
DN2 thymocyte | 2.05e-15 | 2 |
DN3 thymocyte | 2.05e-15 | 2 |
immature single positive thymocyte | 2.05e-15 | 2 |
early T lineage precursor | 2.05e-15 | 2 |
smooth muscle cell of the internal thoracic artery | 2.37e-15 | 2 |
smooth muscle cell of the subclavian artery | 6.39e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
blood | 1.10e-17 | 15 |
haemolymphatic fluid | 1.10e-17 | 15 |
organism substance | 1.10e-17 | 15 |
middle temporal gyrus | 1.15e-15 | 2 |
internal thoracic artery | 2.37e-15 | 2 |
thymus | 2.26e-08 | 4 |
hemolymphoid system gland | 2.26e-08 | 4 |
thymic region | 2.26e-08 | 4 |
pharyngeal gland | 2.26e-08 | 4 |
thymus primordium | 2.26e-08 | 4 |
thoracic segment blood vessel | 6.39e-07 | 5 |
subclavian artery | 6.39e-07 | 5 |