FFCP PHASE1:Hg19::chr2:48949734..48949739,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:48949734..48949739,+ | |||
|description=CAGE_peak_at_chr2:48949734..48949739,+ | |description=CAGE_peak_at_chr2:48949734..48949739,+ | ||
|id=chr2:48949734..48949739,+ | |id=chr2:48949734..48949739,+ | ||
|ontology_enrichment_celltype=CL:0002195!9.87e-11!2;CL:0002571!9.87e-11!2;CL:0002590!2.02e-07!3;CL:0002504!6.14e-07!3;CL:1000279!6.14e-07!3;CL:1000280!6.14e-07!3 | |ontology_enrichment_celltype=CL:0002195!9.87e-11!2;CL:0002571!9.87e-11!2;CL:0002590!2.02e-07!3;CL:0002504!6.14e-07!3;CL:1000279!6.14e-07!3;CL:1000280!6.14e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002590;9.43e-11;3!CL:0002541;1.14e-10;3!CL:0002586;1.14e-10;3!CL:0000306;2.18e-08;4!CL:0002222;2.18e-08;4!CL:0002224;2.18e-08;4!CL:0000149;2.52e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002590,8.99e-11,3;CL:0002541,1.09e-10,3;CL:0002586,1.20e-10,3;CL:0000306,2.26e-08,4;CL:0002222,2.26e-08,4;CL:0002224,2.26e-08,4;CL:0000149,2.61e-08,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:6193;1.33e-29;1!DOID:3350;1.54e-15;2 | |||
|ontology_enrichment_disease_v019_2=DOID:6193,1.33e-29,1;DOID:3350,1.54e-15,2 | |||
|ontology_enrichment_uberon=UBERON:0002118!6.51e-09!5;UBERON:0004532!6.51e-09!5 | |ontology_enrichment_uberon=UBERON:0002118!6.51e-09!5;UBERON:0004532!6.51e-09!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0007625;3.14e-11;11!UBERON:0001781;1.14e-10;3!UBERON:0003124;1.14e-10;3!UBERON:0001782;1.14e-10;3!UBERON:0000920;1.14e-10;3!UBERON:0002346;1.70e-08;4!UBERON:0000923;1.70e-08;4!UBERON:0010316;1.70e-08;4!UBERON:0005291;1.70e-08;4!UBERON:0010077;2.18e-08;4!UBERON:0005389;2.18e-08;4!UBERON:0000484;2.18e-08;4!UBERON:0000965;2.18e-08;4!UBERON:0001803;2.18e-08;4!UBERON:0002050;4.79e-07;5!UBERON:0005423;4.79e-07;5!UBERON:0005284;5.87e-07;5!UBERON:0000966;6.58e-07;5!UBERON:0005388;6.58e-07;5!UBERON:0001802;6.58e-07;5!UBERON:0000019;6.77e-07;19!UBERON:0000047;6.77e-07;19!UBERON:0004088;6.77e-07;19!UBERON:0010230;6.77e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,3.30e-11,11;UBERON:0000920,1.09e-10,3;UBERON:0001782,1.20e-10,3;UBERON:0005424,1.20e-10,3;UBERON:0010077,2.26e-08,4;UBERON:0005389,2.26e-08,4;UBERON:0000484,2.26e-08,4;UBERON:0002546,2.26e-08,4;UBERON:0000965,2.26e-08,4;UBERON:0001803,2.26e-08,4;UBERON:0003073,2.26e-08,4;UBERON:0005426,2.26e-08,4;UBERON:0001781,2.61e-08,4;UBERON:0005284,5.70e-07,5 | |||
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|short_description=p@chr2:48949734..48949739,+ | |short_description=p@chr2:48949734..48949739,+ | ||
}} | }} |
Latest revision as of 10:40, 29 July 2015
Short description: | p@chr2:48949734..48949739, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:48949734..48949739, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the brain vasculature | 8.99e-11 | 3 |
chorionic membrane mesenchymal stem cell | 1.09e-10 | 3 |
retinal pigment epithelial cell | 1.20e-10 | 3 |
crystallin accumulating cell | 2.26e-08 | 4 |
vertebrate lens cell | 2.26e-08 | 4 |
lens epithelial cell | 2.26e-08 | 4 |
visual pigment cell | 2.61e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 3.30e-11 | 11 |
egg chorion | 1.09e-10 | 3 |
pigmented layer of retina | 1.20e-10 | 3 |
presumptive retinal pigmented epithelium | 1.20e-10 | 3 |
cuboidal epithelium | 2.26e-08 | 4 |
transparent eye structure | 2.26e-08 | 4 |
simple cuboidal epithelium | 2.26e-08 | 4 |
cranial placode | 2.26e-08 | 4 |
lens of camera-type eye | 2.26e-08 | 4 |
epithelium of lens | 2.26e-08 | 4 |
lens placode | 2.26e-08 | 4 |
lens vesicle | 2.26e-08 | 4 |
layer of retina | 2.61e-08 | 4 |
brain vasculature | 5.70e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 1.33e-29 | 1 |
mesenchymal cell neoplasm | 1.54e-15 | 2 |