FFCP PHASE1:Hg19::chr1:201390850..201390865,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7135 | |EntrezGene=7135 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11945 | |HGNC=11945 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc001gwp.2_5end | |association_with_transcript=0bp_to_uc001gwp.2_5end | ||
|cluster_id=chr1:201390850..201390865,- | |||
|coexpression_cluster_id=C72 | |||
|description=CAGE_peak_1_at_TNNI1_5end | |description=CAGE_peak_1_at_TNNI1_5end | ||
|id=chr1:201390850..201390865,- | |id=chr1:201390850..201390865,- | ||
|ontology_enrichment_celltype=CL:0000188!2.93e-11!9 | |ontology_enrichment_celltype=CL:0000188!2.93e-11!9 | ||
|ontology_enrichment_celltype_v019=CL:0000188;4.20e-18;9!CL:0000680;6.50e-13;7!CL:0000594;1.51e-08;3!CL:0000515;2.45e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,4.06e-18,9;CL:0000594,1.51e-08,3;CL:0000680,3.41e-07,58;CL:0000056,3.41e-07,58;CL:0000355,3.41e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0003104;3.62e-07;31 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.43e-11!115;UBERON:0003103!5.32e-10!69;UBERON:0003104!3.17e-07!238;UBERON:0009142!3.17e-07!238 | |ontology_enrichment_uberon=UBERON:0007023!1.43e-11!115;UBERON:0003103!5.32e-10!69;UBERON:0003104!3.17e-07!238;UBERON:0009142!3.17e-07!238 | ||
|ontology_enrichment_uberon_v019=UBERON:0001134;6.24e-35;16!UBERON:0002036;6.24e-35;16!UBERON:0002385;7.22e-18;31!UBERON:0001015;7.22e-18;31!UBERON:0000383;7.22e-18;31!UBERON:0003978;3.18e-08;3!UBERON:0000946;3.18e-08;3!UBERON:0004151;4.44e-08;3!UBERON:0005090;7.99e-07;2!UBERON:0001630;7.99e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003103,5.50e-12,68;UBERON:0001134,2.04e-11,62;UBERON:0002036,2.04e-11,62;UBERON:0003082,2.04e-11,62;UBERON:0002385,6.72e-11,64;UBERON:0001015,6.72e-11,64;UBERON:0000383,6.72e-11,64;UBERON:0007023,5.02e-10,114;UBERON:0003104,6.19e-10,160;UBERON:0009142,6.19e-10,160;UBERON:0002329,2.52e-09,71;UBERON:0003059,2.52e-09,71;UBERON:0007282,2.52e-09,71;UBERON:0004290,2.52e-09,71;UBERON:0009618,2.52e-09,71;UBERON:0003077,3.97e-09,72;UBERON:0007285,3.97e-09,72;UBERON:0007503,5.00e-09,78;UBERON:0007524,6.20e-09,73;UBERON:0003978,3.14e-08,3;UBERON:0009751,3.14e-08,3;UBERON:0000946,3.14e-08,3;UBERON:0002523,3.14e-08,3;UBERON:0005983,3.14e-08,3;UBERON:0002165,3.14e-08,3;UBERON:0002062,3.14e-08,3;UBERON:0007280,3.14e-08,3;UBERON:0004151,4.45e-08,3;UBERON:0005256,2.39e-07,122;UBERON:0000486,2.81e-07,83;UBERON:0005090,8.00e-07,2;UBERON:0001630,8.00e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0.204000691244253,0.940364164434263,0,0,0,0.0764134057479513,0,0.314843125254717,0,0,0.154816123316076,0,0,0,0.387336002901508,0.710846162437108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.23779651843358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06400514659507,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,2.75260743718321,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0.121973706129595,0.132529768321485,3.25343040034651,0.725627385107593,1.00928340350251,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,263.14559338012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.4214489204541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,68.6263393604325,18.2873927069841,10.3855358679139,0,0,0,0,0,0,0,0,0,0,0,0,0,3.50119364741774,0,0,0,0,0,0,0,1.03473071292505,0,0.184369168541703,0,3.52442083432933,646.482210459652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182091168006717,0,0,0.15403067420883,0,0,0,0,0,0,0,0.541892875087706,5.01689773854853,0,0.831076008928724,0,0,0,0,1.96808787419823,0,0,0,0,0,0,0,158.346636562496,18.7939312879866,52.8052641057886,93.0396864270581,6.55263493696469,54.3812602178357,136.703510375426,1354.26629422252,0,0,0,0,0,0,0,0,0,0,0,0,4.09374206295634,2.21465597303108,0,0,0,0,0,1.2591072030832,0,0,0,0,0,10.2403085208814,0,0,0,0,0,0,0,0,0,0,0,2.16876448669825,0,0,0.196498082026242,0,0,0,0,0,0,0,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.41837027607914,13.474717973687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.771768851558,0,0,0,0,0.296964680832639,0,0,0,0,0,1.05562704063997,0.996239941255349,0,0,0,0.246169610922139,0,0,0,0,1.38100767891707,0,0,0,0,0,0,0,0,0,0,0,3.10269035917318,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0.134802265961354,584.276527233518,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,217.359975293085,0,0,0,0,73.8086415476872,0,48.1338977862534,0,0,0.126621591911757,0,0,0.640358984218058,0,0,0,0,0,0,0,0.135904206073614,0.313808538937,0,0,0,0,0,0,0,40.7752305857491,19.0203151929697,8.61447629492177,17.7714310444102,34.3380838509257,33.252547158839,1254.85289910707,0,0,0,0,0,0,0.508039992394707,0,0,0.160753148465019,0,0,0,0,0.121499113316049,0,1.49730843868477,10.9105543320796,0.105600336519406,0,0,5.00286728461357,47.0085298959456,4.5768336777855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314408610199332,0,0,0,0.60896299190448,0,0,0.7520696820681,0,0,0,0,0,0,0,0,0.372578417648301,0.138348634936231,0,0,0,0,0,0,0,0,0,3.4092540949516,11.3205555788659,20.4656580967203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,39.6027487016522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994581110581374,0,0,0,0,0,0,0.202612753855184,0,0,0.126831620387814,0,26.3163728091447,751.759935259781,0,0,0,0,0,0,0.0887023701626388,0.115233987555779,0,0,0.920818829879887,0,0,2.51177897121645,0,0,0.913158720509496,0,0,0.142953088353313,0,0,57.1993715875486,0,0,0,0,12.4765934057881,0,0,0,0.9164274741762,0,0,0,0,0,1546.06006320469,2924.86336733448,460.446329241265,52.4567872503871,0,0,0.237840181555137,0,4.39762066981717,0,0,0,0,0,0,0,0,8.0304588240846,0,0,0,0,0,0,0,0,71.1030389277038,0,0,0.339957450954573,0,0.5290268405154,0.371995018166751,0,2.16313281061895,0.504665699340316,0,62.5890594996499,0.101988829741982,0,0,0,4.92561538418556,1.07185652062471,0,0,1034.61128018356,118.556086868943,0.839655827868079,1.30356900021302,0,23.4221542463647,42.2424924922678,732.399139925378,298.76967184745,91.0599756757223,18.0022735535618,27.6108095933191,0,0,0,0,11.7320471201727,0.122241444182866,0.406896178315738,0,46.8967939067091,0.961705476909699 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0.204000691244253,0.940364164434263,0,0,0,0.0764134057479513,0,0.314843125254717,0,0,0.154816123316076,0,0,0,0.387336002901508,0.710846162437108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.23779651843358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06400514659507,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,2.75260743718321,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0.121973706129595,0.132529768321485,3.25343040034651,0.725627385107593,1.00928340350251,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,263.14559338012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.4214489204541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,68.6263393604325,18.2873927069841,10.3855358679139,0,0,0,0,0,0,0,0,0,0,0,0,0,3.50119364741774,0,0,0,0,0,0,0,1.03473071292505,0,0.184369168541703,0,3.52442083432933,646.482210459652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182091168006717,0,0,0.15403067420883,0,0,0,0,0,0,0,0.541892875087706,5.01689773854853,0,0.831076008928724,0,0,0,0,1.96808787419823,0,0,0,0,0,0,0,158.346636562496,18.7939312879866,52.8052641057886,93.0396864270581,6.55263493696469,54.3812602178357,136.703510375426,1354.26629422252,0,0,0,0,0,0,0,0,0,0,0,0,4.09374206295634,2.21465597303108,0,0,0,0,0,1.2591072030832,0,0,0,0,0,10.2403085208814,0,0,0,0,0,0,0,0,0,0,0,2.16876448669825,0,0,0.196498082026242,0,0,0,0,0,0,0,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.41837027607914,13.474717973687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.771768851558,0,0,0,0,0.296964680832639,0,0,0,0,0,1.05562704063997,0.996239941255349,0,0,0,0.246169610922139,0,0,0,0,1.38100767891707,0,0,0,0,0,0,0,0,0,0,0,3.10269035917318,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0.134802265961354,584.276527233518,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,217.359975293085,0,0,0,0,73.8086415476872,0,48.1338977862534,0,0,0.126621591911757,0,0,0.640358984218058,0,0,0,0,0,0,0,0.135904206073614,0.313808538937,0,0,0,0,0,0,0,40.7752305857491,19.0203151929697,8.61447629492177,17.7714310444102,34.3380838509257,33.252547158839,1254.85289910707,0,0,0,0,0,0,0.508039992394707,0,0,0.160753148465019,0,0,0,0,0.121499113316049,0,1.49730843868477,10.9105543320796,0.105600336519406,0,0,5.00286728461357,47.0085298959456,4.5768336777855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314408610199332,0,0,0,0.60896299190448,0,0,0.7520696820681,0,0,0,0,0,0,0,0,0.372578417648301,0.138348634936231,0,0,0,0,0,0,0,0,0,3.4092540949516,11.3205555788659,20.4656580967203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,39.6027487016522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994581110581374,0,0,0,0,0,0,0.202612753855184,0,0,0.126831620387814,0,26.3163728091447,751.759935259781,0,0,0,0,0,0,0.0887023701626388,0.115233987555779,0,0,0.920818829879887,0,0,2.51177897121645,0,0,0.913158720509496,0,0,0.142953088353313,0,0,57.1993715875486,0,0,0,0,12.4765934057881,0,0,0,0.9164274741762,0,0,0,0,0,1546.06006320469,2924.86336733448,460.446329241265,52.4567872503871,0,0,0.237840181555137,0,4.39762066981717,0,0,0,0,0,0,0,0,8.0304588240846,0,0,0,0,0,0,0,0,71.1030389277038,0,0,0.339957450954573,0,0.5290268405154,0.371995018166751,0,2.16313281061895,0.504665699340316,0,62.5890594996499,0.101988829741982,0,0,0,4.92561538418556,1.07185652062471,0,0,1034.61128018356,118.556086868943,0.839655827868079,1.30356900021302,0,23.4221542463647,42.2424924922678,732.399139925378,298.76967184745,91.0599756757223,18.0022735535618,27.6108095933191,0,0,0,0,11.7320471201727,0.122241444182866,0.406896178315738,0,46.8967939067091,0.961705476909699 | ||
|short_description=p1@TNNI1 | |short_description=p1@TNNI1 | ||
}} | }} |
Latest revision as of 17:54, 19 September 2015
Short description: | p1@TNNI1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TNNI1_5end |
Coexpression cluster: | C72_skeletal_tongue_throat_heart_diaphragm_penis_left |
Association with transcript: | 0bp_to_uc001gwp.2_5end |
EntrezGene: | TNNI1 |
HGNC: | 11945 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 4.06e-18 | 9 |
skeletal muscle satellite cell | 1.51e-08 | 3 |
muscle precursor cell | 3.41e-07 | 58 |
myoblast | 3.41e-07 | 58 |
multi-potent skeletal muscle stem cell | 3.41e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
compound organ | 5.50e-12 | 68 |
skeletal muscle tissue | 2.04e-11 | 62 |
striated muscle tissue | 2.04e-11 | 62 |
myotome | 2.04e-11 | 62 |
muscle tissue | 6.72e-11 | 64 |
musculature | 6.72e-11 | 64 |
musculature of body | 6.72e-11 | 64 |
adult organism | 5.02e-10 | 114 |
mesenchyme | 6.19e-10 | 160 |
entire embryonic mesenchyme | 6.19e-10 | 160 |
somite | 2.52e-09 | 71 |
presomitic mesoderm | 2.52e-09 | 71 |
presumptive segmental plate | 2.52e-09 | 71 |
dermomyotome | 2.52e-09 | 71 |
trunk paraxial mesoderm | 2.52e-09 | 71 |
paraxial mesoderm | 3.97e-09 | 72 |
presumptive paraxial mesoderm | 3.97e-09 | 72 |
epithelial vesicle | 5.00e-09 | 78 |
dense mesenchyme tissue | 6.20e-09 | 73 |
valve | 3.14e-08 | 3 |
cardiac mesenchyme | 3.14e-08 | 3 |
cardial valve | 3.14e-08 | 3 |
tunica intima | 3.14e-08 | 3 |
heart layer | 3.14e-08 | 3 |
endocardium | 3.14e-08 | 3 |
endocardial cushion | 3.14e-08 | 3 |
presumptive endocardium | 3.14e-08 | 3 |
cardiac chamber | 4.45e-08 | 3 |
trunk mesenchyme | 2.39e-07 | 122 |
multilaminar epithelium | 2.81e-07 | 83 |
muscle structure | 8.00e-07 | 2 |
muscle organ | 8.00e-07 | 2 |