FFCP PHASE1:Hg19::chr12:6299583..6299590,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:6299583..6299590,- | |||
|coexpression_cluster_id=C19 | |coexpression_cluster_id=C19 | ||
|description=CAGE_peak_at_chr12:6299583..6299590,- | |description=CAGE_peak_at_chr12:6299583..6299590,- | ||
|id=chr12:6299583..6299590,- | |id=chr12:6299583..6299590,- | ||
|ontology_enrichment_celltype=CL:0000037!6.49e-09!172;CL:0000566!6.49e-09!172;CL:0000988!1.64e-08!182;CL:0002032!2.31e-08!165;CL:0000837!2.31e-08!165;CL:0000039!1.11e-07!7;CL:0000586!1.11e-07!7;CL:0002150!5.54e-07!3;CL:0000861!5.54e-07!3 | |ontology_enrichment_celltype=CL:0000037!6.49e-09!172;CL:0000566!6.49e-09!172;CL:0000988!1.64e-08!182;CL:0002032!2.31e-08!165;CL:0000837!2.31e-08!165;CL:0000039!1.11e-07!7;CL:0000586!1.11e-07!7;CL:0002150!5.54e-07!3;CL:0000861!5.54e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000039;2.53e-14;7!CL:0000586;2.53e-14;7!CL:0002127;1.07e-11;1!CL:0000911;1.07e-11;1!CL:0000814;1.07e-11;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.11e-14,7;CL:0000586,2.11e-14,7;CL:0002127,9.61e-12,1;CL:0000914,9.61e-12,1;CL:0000911,9.61e-12,1;CL:0000814,9.61e-12,1;CL:0002042,9.61e-12,1;CL:0002039,9.61e-12,1;CL:0002040,9.61e-12,1;CL:0002041,9.61e-12,1 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.47e-17;10!UBERON:0005564;3.47e-17;10 | |||
|ontology_enrichment_disease=DOID:162!7.95e-13!235;DOID:14566!3.09e-12!239;DOID:2531!3.14e-12!51;DOID:0060083!3.14e-12!51;DOID:1036!8.43e-09!8;DOID:3095!1.39e-08!22;DOID:2994!1.39e-08!22;DOID:1240!1.64e-08!39;DOID:0060058!1.67e-08!10;DOID:0050687!7.48e-07!143 | |ontology_enrichment_disease=DOID:162!7.95e-13!235;DOID:14566!3.09e-12!239;DOID:2531!3.14e-12!51;DOID:0060083!3.14e-12!51;DOID:1036!8.43e-09!8;DOID:3095!1.39e-08!22;DOID:2994!1.39e-08!22;DOID:1240!1.64e-08!39;DOID:0060058!1.67e-08!10;DOID:0050687!7.48e-07!143 | ||
|ontology_enrichment_disease_v019=DOID:9119;1.07e-11;1!DOID:3095;6.31e-08;22!DOID:2994;6.31e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:9119,1.07e-11,1;DOID:3095,5.35e-08,22;DOID:2994,5.35e-08,22;DOID:2531,5.98e-07,51;DOID:0060083,5.98e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0000473!2.00e-09!8 | |ontology_enrichment_uberon=UBERON:0000473!2.00e-09!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.10e-21;8!UBERON:0003135;1.20e-15;11!UBERON:0005795;1.07e-11;1!UBERON:0000991;2.69e-08;21!UBERON:0003101;6.31e-08;22!UBERON:0000079;6.31e-08;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.21e-21,8;UBERON:0003135,1.24e-15,11;UBERON:0000991,2.74e-08,21;UBERON:0009196,2.74e-08,21;UBERON:0009117,2.74e-08,21;UBERON:0005564,2.74e-08,21;UBERON:0004176,6.43e-08,22;UBERON:0003101,6.43e-08,22;UBERON:0000079,6.43e-08,22 | |||
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| ||
|short_description=p@chr12:6299583..6299590,- | |short_description=p@chr12:6299583..6299590,- | ||
}} | }} |
Latest revision as of 11:08, 24 July 2015
Short description: | p@chr12:6299583..6299590, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:6299583..6299590, - |
Coexpression cluster: | C19_embryonic_testis_cord_chronic_CD14_NK_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.11e-14 | 7 |
germ cell | 2.11e-14 | 7 |
innate effector T cell | 9.61e-12 | 1 |
immature NK T cell | 9.61e-12 | 1 |
effector T cell | 9.61e-12 | 1 |
mature NK T cell | 9.61e-12 | 1 |
immature NK T cell stage IV | 9.61e-12 | 1 |
immature NK T cell stage I | 9.61e-12 | 1 |
immature NK T cell stage II | 9.61e-12 | 1 |
immature NK T cell stage III | 9.61e-12 | 1 |
Ontology term | p-value | n |
---|---|---|
testis | 2.21e-21 | 8 |
male reproductive organ | 1.24e-15 | 11 |
gonad | 2.74e-08 | 21 |
indifferent external genitalia | 2.74e-08 | 21 |
indifferent gonad | 2.74e-08 | 21 |
gonad primordium | 2.74e-08 | 21 |
external genitalia | 6.43e-08 | 22 |
male organism | 6.43e-08 | 22 |
male reproductive system | 6.43e-08 | 22 |
Ontology term | p-value | n |
---|---|---|
acute myeloid leukemia | 1.07e-11 | 1 |
germ cell and embryonal cancer | 5.35e-08 | 22 |
germ cell cancer | 5.35e-08 | 22 |
hematologic cancer | 5.98e-07 | 51 |
immune system cancer | 5.98e-07 | 51 |