FFCP PHASE1:Hg19::chr18:21452964..21452993,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr18:21452964..21452993,+
|short_description=p1@LAMA3
|description=CAGE_peak_1_at_LAMA3_5end
|association_with_transcript=0bp_to_NM_000227,NM_001127718,uc002ku...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3909 | |EntrezGene=3909 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6483 | |HGNC=6483 | ||
|TSSclassifier=strong | |||
|UniProt=B0YJ33,Q16787,Q6VU69 | |UniProt=B0YJ33,Q16787,Q6VU69 | ||
|association_with_transcript=0bp_to_NM_000227,NM_001127718,uc002kus.3,uc002kut.3_5end | |||
|cluster_id=chr18:21452964..21452993,+ | |||
|coexpression_cluster_id=C363 | |||
|description=CAGE_peak_1_at_LAMA3_5end | |||
|id=chr18:21452964..21452993,+ | |||
|ontology_enrichment_celltype=CL:0002076!5.02e-26!43;CL:0000066!2.80e-24!254;CL:0000223!5.19e-20!59;CL:0002251!5.73e-12!21;CL:0002368!1.06e-11!13;CL:0002159!1.42e-08!13;CL:0002202!1.62e-07!9;CL:0002632!1.62e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.80e-24;42!CL:0002251;7.08e-16;20!CL:0002368;3.02e-14;13!CL:0002159;1.23e-09;14!CL:0002202;4.59e-09;9!CL:0002632;4.59e-09;9!CL:0000349;1.36e-07;19!CL:0000622;1.55e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,7.85e-34,42;CL:0000066,7.61e-27,253;CL:0000223,2.06e-22,58;CL:0002251,6.38e-16,20;CL:0002368,2.98e-14,13;CL:0002159,1.24e-09,14;CL:0002202,4.54e-09,9;CL:0002632,4.54e-09,9;CL:0000349,1.35e-07,19;CL:0000622,1.54e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000223;4.63e-12;58 | |||
|ontology_enrichment_disease=DOID:1749!4.20e-13!14;DOID:305!1.40e-09!106;DOID:299!7.53e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;7.26e-16;14!DOID:299;4.68e-09;25 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,7.68e-16,14;DOID:305,4.23e-09,106;DOID:299,4.48e-09,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.20e-22!169;UBERON:0000925!1.20e-22!169;UBERON:0006595!1.20e-22!169;UBERON:0001007!1.26e-15!155;UBERON:0001555!1.26e-15!155;UBERON:0007026!1.26e-15!155;UBERON:0001004!7.67e-14!72;UBERON:0000077!2.26e-13!130;UBERON:0004921!1.10e-12!129;UBERON:0004185!1.10e-12!129;UBERON:0000161!1.64e-12!35;UBERON:0000464!3.12e-12!104;UBERON:0005631!3.81e-11!14;UBERON:0000158!3.81e-11!14;UBERON:0000166!6.29e-11!21;UBERON:0000466!9.51e-11!126;UBERON:0000165!6.90e-10!28;UBERON:0000930!6.90e-10!28;UBERON:0001008!1.11e-09!45;UBERON:0006554!3.08e-09!44;UBERON:0000062!7.70e-09!511;UBERON:0003124!1.12e-08!7;UBERON:0004175!5.24e-08!25;UBERON:0000058!9.14e-08!26;UBERON:0005156!1.10e-07!59;UBERON:0000990!1.10e-07!59;UBERON:0000065!1.13e-07!53;UBERON:0001041!1.37e-07!98;UBERON:0005911!3.23e-07!82;UBERON:0003064!4.66e-07!37;UBERON:0000922!5.81e-07!612;UBERON:0005153!5.94e-07!37;UBERON:0005178!6.28e-07!34;UBERON:0002224!6.28e-07!34;UBERON:0003133!7.25e-07!48;UBERON:0002050!7.71e-07!605;UBERON:0005423!7.71e-07!605;UBERON:0000064!7.82e-07!219;UBERON:0003102!8.28e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;2.05e-12;33!UBERON:0001041;4.94e-11;14!UBERON:0000161;7.65e-11;19!UBERON:0000166;7.65e-11;19!UBERON:0000165;1.50e-09;28!UBERON:0001555;2.65e-09;54!UBERON:0005631;5.90e-09;10!UBERON:0000158;5.90e-09;10!UBERON:0000365;1.14e-07;5!UBERON:0006554;1.18e-07;30!UBERON:0001008;1.18e-07;30!UBERON:0000478;1.26e-07;24!UBERON:0001044;1.47e-07;6!UBERON:0003293;1.47e-07;6!UBERON:0003294;1.47e-07;6!UBERON:0010047;1.47e-07;6!UBERON:0003408;1.47e-07;6!UBERON:0000167;1.47e-07;6!UBERON:0000344;2.41e-07;20!UBERON:0007196;2.73e-07;15!UBERON:0001558;2.73e-07;15!UBERON:0000486;3.05e-07;12!UBERON:0005409;4.35e-07;22!UBERON:0000974;9.46e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,9.80e-25,160;UBERON:0000925,9.80e-25,160;UBERON:0006595,9.80e-25,160;UBERON:0001007,1.54e-16,145;UBERON:0001555,1.54e-16,145;UBERON:0007026,1.54e-16,145;UBERON:0004921,2.22e-14,118;UBERON:0000161,2.33e-14,36;UBERON:0001004,5.40e-14,74;UBERON:0001008,5.56e-14,48;UBERON:0005631,1.08e-13,14;UBERON:0000158,1.08e-13,14;UBERON:0006554,2.08e-13,47;UBERON:0000166,1.41e-11,22;UBERON:0003124,2.30e-10,7;UBERON:0003102,1.78e-09,99;UBERON:0004175,3.96e-09,25;UBERON:0000165,4.70e-09,29;UBERON:0000930,4.70e-09,29;UBERON:0001041,3.63e-08,87;UBERON:0000153,4.50e-08,62;UBERON:0007811,4.50e-08,62;UBERON:0005156,5.95e-08,59;UBERON:0000990,5.95e-08,59;UBERON:0003100,1.03e-07,41;UBERON:0000365,1.13e-07,5;UBERON:0000478,1.25e-07,24;UBERON:0001044,1.47e-07,6;UBERON:0003293,1.47e-07,6;UBERON:0003294,1.47e-07,6;UBERON:0010047,1.47e-07,6;UBERON:0000167,1.47e-07,6;UBERON:0000065,1.53e-07,54;UBERON:0000344,2.31e-07,20;UBERON:0007196,2.68e-07,15;UBERON:0001558,2.68e-07,15;UBERON:0005795,2.89e-07,22;UBERON:0003975,3.41e-07,22;UBERON:0004923,3.65e-07,66;UBERON:0003408,5.06e-07,10;UBERON:0005911,7.32e-07,82;UBERON:0005423,7.35e-07,581;UBERON:0000922,7.79e-07,592 | |||
|phase1_expression=0,0,0,0,0,0,0,0,1.30592814099919,1.47440361900905,2.79120467188971,513.118783133775,304.650859853864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.57338043937874,205.95035428328,337.35062903164,378.258352400624,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,4.23779651843358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.403213486449465,0.534880391567015,0.144824403882799,0,0,0,0,0,0.434539556882471,0,1.94653948121054,0.0945348171640679,0,0.087834785693126,0.327447688744282,127.50335090239,91.5837573677541,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0.732186172644509,0,0,0,0,0,0,0,0.366403487860815,0,0,122.10633459991,0,0,0,0,1.06400514659507,1.68203280042692,0,0,0,0,0,0,0,0,0,10.2684927878001,0,0,0.485618833104395,0.140450806702248,0,0,0.103325781175765,0,0,0,0,0,0.375355559615893,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1904.19918621796,1904.5861600858,1751.51566404065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96781501668982,0,1849.95081084779,474.335398747155,764.120719300806,835.981071336364,0,0,0,0,0,0,0,0,0,0,0,0,0,827.669754103241,5303.0278051098,2221.19044849647,1539.33188821656,968.682917067035,673.219984614111,0,0,0,0,0,1.26995788584338,0,0,32.503764744314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0.508189248444927,0,0,0,0,0,0,0,0,1.00034104211935,0,0,0,0,0,0,0,6.2083842775503,0,2.21243002250044,0,0,0,0,0,0.106727557803444,570.48608946186,549.23695038464,316.300246822846,0,0,0,0,0,0,0,0,0,0,0,0,0,1418.78378386604,298.526566130176,0,0,2.36023946926963,24.8159787099077,53.1405826020462,2.35304930753057,2.92278449306521,7.28306239360842,1.13733384070897,0,0.431831832204279,0,0,0,70.3458513604306,62.3307006696543,2.23874754722178,0,0,0.256450125116389,0,0,8.44936295511323,0,0,735.634154173097,486.245064035318,0,0,0,0,0,0,0,0,0,1351.53475290672,826.801669804687,711.696097582296,503.563433098928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,0,0,436.848391773825,227.232471406632,368.05152883127,7.34321646058877,166.605579223766,175.210334694331,146.331950667103,1239.81719091696,0,0,0,0,0,0,0,0,0,0.962479855263359,47.7828421163012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.041291884085,0,0,0.111443384277478,0,1083.66121622438,43.6538080823979,862.814412196743,0,0.140669416410513,0,0,2.32237948940793,1.59398390600856,4.97311047956066,0,0,0,0,130.219240812477,9.30910108313168,0,9.66705375241949,0,0,0,0,0,0,0,9.42499448065232,58.9450062118888,23.3913358269345,2.83665218121524,0,0,0,0,0,0,0,0,0,0,29.5578337870639,5.1556673197544,0,0,0,0,760.498764800896,117.702907521393,912.022501767884,0,0,0,0,0,0,0,0,85.876212262907,43.5831597784924,0,0,9.95261931078505,15.9223616106011,27.4963565220131,0,0,0,0.134802265961354,0,0,0,22.1101019393261,0,4.73501283419269,7.25944296291983,0,0.063186579628488,0,0,0,0,0.313932918407225,0,8.53828638089378,0,67.8618576890362,265.657389390378,98.8121994687569,3.31980669659857,0,0,0,0,12.5115831270061,0,4.29363407483012,0,0,0,2.34661659281764,31.5024163588527,8.1112138000954,7.39295555453882,40.0571359688415,0,0,0,0,25.2192617039971,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.134366944973453,0,0,0.157566364614447,0.164831716762333,0.13480708770837,0,0,0,0,0,0,0,0.449947783103001,7.7380195455795,0,26.1639056327428,2.28536551167675,0.524545881349981,0,0,103.82612174982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.3914854240168,0.213574825135389,0.471612915298998,0.414239055347196,0,0,0,152.563560607073,0,0,0,0,9.10913758251359,0,0,0,0,0,0,0,5.6241183582948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,166.513953206598,0,0,0,0,0,268.568654821333,569.822770190203,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,41.3201894889318,4.60081921056187,98.6845860046633,12.7078232765372,0,0,0,1.35378591028663,0,0,0,0,341.547559161375,0,0,0,0,0,9.3203820365721,4.46590060550365,0,38.839778002437,0,0,1.21393120847326,0.455324382702595,74.7760980471045,0,0,0.0679697329768317,0,0,42.0454699152021,6.90739217084523,0,1.68163297988273,0.913158720509496,0,0,0,0,0,0,0,233.947049340069,90.3100743826995,41.4755797088455,18.0695490704517,0,0,8.89112805400951,386.503287233812,6.51433409895072,10.5109283287518,1.78968690876468,31.898825924954,3.41370189950354,0,0,0,8.25708688200537,0,0.397901550322736,0,0.45178432815584,0,0,31.7185789823653,9.83518022267808,0.470317296361523,1.47088993052343,0,0,0,0.8453114551668,0,0,0,0,9.10625086888854,647.562089598294,52.959302014851,53.3145563419958,9.63331495149536,0,0,0,0,10.580536810308,0,0,0,0,0,0,0.61193297845189,0.26721740526556,4.04337557953318,0,0.909344378618873,0,0,0,4.26467963801962,3.57096647195611,2.38978966393223,33.644495148355,0,0,0,6.09606894111492,7.52913262387618,6.196388877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| 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| ||
|short_description=p1@LAMA3 | |||
}} | }} |
Latest revision as of 00:02, 19 September 2015
Short description: | p1@LAMA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LAMA3_5end |
Coexpression cluster: | C363_Mallassezderived_Gingival_Keratinocyte_Mammary_Prostate_Small_Urothelial |
Association with transcript: | 0bp_to_NM_000227, NM_001127718, uc002kus.3, uc002kut.3_5end |
EntrezGene: | LAMA3 |
HGNC: | 6483 |
UniProt: | B0YJ33Q16787Q6VU69 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 7.85e-34 | 42 |
epithelial cell | 7.61e-27 | 253 |
endodermal cell | 2.06e-22 | 58 |
epithelial cell of alimentary canal | 6.38e-16 | 20 |
respiratory epithelial cell | 2.98e-14 | 13 |
general ecto-epithelial cell | 1.24e-09 | 14 |
epithelial cell of tracheobronchial tree | 4.54e-09 | 9 |
epithelial cell of lower respiratory tract | 4.54e-09 | 9 |
extraembryonic cell | 1.35e-07 | 19 |
acinar cell | 1.54e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 7.68e-16 | 14 |
carcinoma | 4.23e-09 | 106 |
adenocarcinoma | 4.48e-09 | 25 |