FFCP PHASE1:Hg19::chr2:240220194..240220214,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9759 | |EntrezGene=9759 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14063 | |HGNC=14063 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=10bp_to_ENST00000535493_5end | |association_with_transcript=10bp_to_ENST00000535493_5end | ||
|cluster_id=chr2:240220194..240220214,- | |||
|coexpression_cluster_id=C1121 | |coexpression_cluster_id=C1121 | ||
|description=CAGE_peak_9_at_HDAC4_5end | |description=CAGE_peak_9_at_HDAC4_5end | ||
|id=chr2:240220194..240220214,- | |id=chr2:240220194..240220214,- | ||
|ontology_enrichment_celltype=CL:0000084!5.06e-42!25;CL:0000827!5.06e-42!25;CL:0000791!1.72e-36!18;CL:0000789!1.72e-36!18;CL:0002420!1.72e-36!18;CL:0002419!1.72e-36!18;CL:0000790!1.72e-36!18;CL:0000838!3.97e-26!52;CL:0000542!1.80e-25!53;CL:0000051!1.80e-25!53;CL:0000625!5.32e-23!11;CL:0002087!5.17e-20!119;CL:0000738!9.09e-20!140;CL:0000988!1.74e-16!182;CL:0000037!2.02e-16!172;CL:0000566!2.02e-16!172;CL:0002031!3.36e-15!124;CL:0002032!1.30e-13!165;CL:0000837!1.30e-13!165;CL:0000624!4.64e-13!6;CL:0000080!9.23e-09!6;CL:0000623!6.25e-08!3;CL:0000825!6.25e-08!3;CL:0000842!1.02e-07!3;CL:0000767!3.28e-07!3 | |ontology_enrichment_celltype=CL:0000084!5.06e-42!25;CL:0000827!5.06e-42!25;CL:0000791!1.72e-36!18;CL:0000789!1.72e-36!18;CL:0002420!1.72e-36!18;CL:0002419!1.72e-36!18;CL:0000790!1.72e-36!18;CL:0000838!3.97e-26!52;CL:0000542!1.80e-25!53;CL:0000051!1.80e-25!53;CL:0000625!5.32e-23!11;CL:0002087!5.17e-20!119;CL:0000738!9.09e-20!140;CL:0000988!1.74e-16!182;CL:0000037!2.02e-16!172;CL:0000566!2.02e-16!172;CL:0002031!3.36e-15!124;CL:0002032!1.30e-13!165;CL:0000837!1.30e-13!165;CL:0000624!4.64e-13!6;CL:0000080!9.23e-09!6;CL:0000623!6.25e-08!3;CL:0000825!6.25e-08!3;CL:0000842!1.02e-07!3;CL:0000767!3.28e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000084;2.11e-41;25!CL:0000791;4.45e-37;18!CL:0000789;4.45e-37;18!CL:0002419;4.45e-37;18!CL:0000625;5.06e-27;11!CL:0000623;1.12e-15;3!CL:0000226;2.09e-15;3!CL:0000842;2.09e-15;3!CL:0000542;1.25e-12;53!CL:0000624;1.71e-08;6!CL:0000767;2.58e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.60e-41,25;CL:0000827,1.60e-41,25;CL:0000791,2.81e-37,18;CL:0000789,2.81e-37,18;CL:0002420,2.81e-37,18;CL:0002419,2.81e-37,18;CL:0000790,2.81e-37,18;CL:0000625,3.86e-27,11;CL:0000838,5.53e-27,52;CL:0000542,2.14e-26,53;CL:0000051,2.14e-26,53;CL:0000623,7.37e-16,3;CL:0000825,7.37e-16,3;CL:0000738,1.65e-15,136;CL:0000226,2.20e-15,3;CL:0000842,2.20e-15,3;CL:0002087,4.14e-14,115;CL:0000037,1.48e-11,168;CL:0000988,1.05e-10,177;CL:0002031,2.69e-09,120;CL:0000624,1.72e-08,6;CL:0002032,8.78e-08,161;CL:0000837,8.78e-08,161;CL:0000767,1.75e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;4.45e-37;18!CL:0000051;1.25e-12;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!3.95e-18!15;UBERON:0000179!3.95e-18!15;UBERON:0000463!3.95e-18!15;UBERON:0002370!1.40e-09!4;UBERON:0005058!1.40e-09!4;UBERON:0009113!1.40e-09!4;UBERON:0003295!1.40e-09!4;UBERON:0005562!1.40e-09!4;UBERON:0002193!3.11e-08!112;UBERON:0002390!3.74e-08!102;UBERON:0003061!3.74e-08!102;UBERON:0004177!6.32e-08!7;UBERON:0001042!3.23e-07!10;UBERON:0009145!3.23e-07!10 | |ontology_enrichment_uberon=UBERON:0000178!3.95e-18!15;UBERON:0000179!3.95e-18!15;UBERON:0000463!3.95e-18!15;UBERON:0002370!1.40e-09!4;UBERON:0005058!1.40e-09!4;UBERON:0009113!1.40e-09!4;UBERON:0003295!1.40e-09!4;UBERON:0005562!1.40e-09!4;UBERON:0002193!3.11e-08!112;UBERON:0002390!3.74e-08!102;UBERON:0003061!3.74e-08!102;UBERON:0004177!6.32e-08!7;UBERON:0001042!3.23e-07!10;UBERON:0009145!3.23e-07!10 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.10e-11;15!UBERON:0000179;3.10e-11;15!UBERON:0000463;3.10e-11;15!UBERON:0002370;5.94e-11;2!UBERON:0005058;5.94e-11;2!UBERON:0009113;5.94e-11;2!UBERON:0002390;5.05e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,9.21e-12,4;UBERON:0005058,9.21e-12,4;UBERON:0009113,9.21e-12,4;UBERON:0003295,9.21e-12,4;UBERON:0005562,9.21e-12,4;UBERON:0000178,3.55e-11,15;UBERON:0000179,3.55e-11,15;UBERON:0000463,3.55e-11,15;UBERON:0003351,5.44e-08,6;UBERON:0004177,6.59e-07,7;UBERON:0005057,6.59e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57345710739562,1.91914699048606,0.309632246632152,0,0,0,0,0,0,0,0.200544447470142,0.651032612147555,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0.645484683583826,0,0.188242339542605,0.272906150057846,0,0,0,0,0,0.199463657621632,0,0,0.56738522469114,0,0.251248665256743,0,0,0,0.736555271975129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764546456250458,0,0.560508562981536,0,8.26181034478099,6.6811829667358,5.75684197198626,0.167186495390678,0.32592226663359,3.31413464014313,1.94826728407911,0.222820913770347,0.294605907474837,0.443067789167242,0.541607727530031,0,0.130059347559878,0.328875809207352,1.10540007114339,0.579606171470105,1.63115219478266,7.75868401460168,8.36284190439814,0.226618685395132,0.766440987203842,2.74901956386104,1.51811815211702,1.27426165729639,1.95325036156926,0.950452044448374,0.602300476311091,1.27986611154418,2.49861453104692,1.4206635122641,0.821127996921047,1.41124720257313,1.60464117470104,2.89648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.0365774853663,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,1.14596527667483,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79336230389644,2.75843064282698,3.23441362289276,1.79680250791648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,1.03384013061444,4.09856981555372,1.81436848265855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0.764637207142375,0.569647187174163,0,2.05681136543097,0.648473311192717,1.08006287447623,1.58625035258854,0,0,0,0,0,7.5410353949319,1.27541018183058,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.835218521685727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0,0.552567831062295,0.503865495708552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.10966490978682,0,0,0,0,0,0.37950746544837,0,0,0,0,0,0,0,0,0,0.123563938946503,0.313265848516366,0,0,0,0.364909578431332,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02956998717179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.999936979274649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0.342976018874837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0,0,0,0.644578879735772,0,0,0,0,0,0.458729283404541,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,1.55013383606415,3.1037357147929,0,0,0,0,0.342233301085281,0.202056159043763,0,0,0,0,0,0,0,0,0,0,1.00636896795513,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57345710739562,1.91914699048606,0.309632246632152,0,0,0,0,0,0,0,0.200544447470142,0.651032612147555,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0.645484683583826,0,0.188242339542605,0.272906150057846,0,0,0,0,0,0.199463657621632,0,0,0.56738522469114,0,0.251248665256743,0,0,0,0.736555271975129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764546456250458,0,0.560508562981536,0,8.26181034478099,6.6811829667358,5.75684197198626,0.167186495390678,0.32592226663359,3.31413464014313,1.94826728407911,0.222820913770347,0.294605907474837,0.443067789167242,0.541607727530031,0,0.130059347559878,0.328875809207352,1.10540007114339,0.579606171470105,1.63115219478266,7.75868401460168,8.36284190439814,0.226618685395132,0.766440987203842,2.74901956386104,1.51811815211702,1.27426165729639,1.95325036156926,0.950452044448374,0.602300476311091,1.27986611154418,2.49861453104692,1.4206635122641,0.821127996921047,1.41124720257313,1.60464117470104,2.89648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.0365774853663,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,1.14596527667483,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79336230389644,2.75843064282698,3.23441362289276,1.79680250791648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,1.03384013061444,4.09856981555372,1.81436848265855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0.764637207142375,0.569647187174163,0,2.05681136543097,0.648473311192717,1.08006287447623,1.58625035258854,0,0,0,0,0,7.5410353949319,1.27541018183058,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.835218521685727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0,0.552567831062295,0.503865495708552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.10966490978682,0,0,0,0,0,0.37950746544837,0,0,0,0,0,0,0,0,0,0.123563938946503,0.313265848516366,0,0,0,0.364909578431332,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02956998717179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.999936979274649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0.342976018874837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0,0,0,0.644578879735772,0,0,0,0,0,0.458729283404541,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,1.55013383606415,3.1037357147929,0,0,0,0,0.342233301085281,0.202056159043763,0,0,0,0,0,0,0,0,0,0,1.00636896795513,0 | ||
|short_description=p9@HDAC4 | |short_description=p9@HDAC4 | ||
}} | }} |
Latest revision as of 06:46, 16 September 2015
Short description: | p9@HDAC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_HDAC4_5end |
Coexpression cluster: | C1121_Hodgkin_CD4_acute_CD8_thymus_Natural_chronic |
Association with transcript: | 10bp_to_ENST00000535493_5end |
EntrezGene: | HDAC4 |
HGNC: | 14063 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.60e-41 | 25 |
pro-T cell | 1.60e-41 | 25 |
mature alpha-beta T cell | 2.81e-37 | 18 |
alpha-beta T cell | 2.81e-37 | 18 |
immature T cell | 2.81e-37 | 18 |
mature T cell | 2.81e-37 | 18 |
immature alpha-beta T cell | 2.81e-37 | 18 |
CD8-positive, alpha-beta T cell | 3.86e-27 | 11 |
lymphoid lineage restricted progenitor cell | 5.53e-27 | 52 |
lymphocyte | 2.14e-26 | 53 |
common lymphoid progenitor | 2.14e-26 | 53 |
natural killer cell | 7.37e-16 | 3 |
pro-NK cell | 7.37e-16 | 3 |
leukocyte | 1.65e-15 | 136 |
single nucleate cell | 2.20e-15 | 3 |
mononuclear cell | 2.20e-15 | 3 |
nongranular leukocyte | 4.14e-14 | 115 |
hematopoietic stem cell | 1.48e-11 | 168 |
hematopoietic cell | 1.05e-10 | 177 |
hematopoietic lineage restricted progenitor cell | 2.69e-09 | 120 |
CD4-positive, alpha-beta T cell | 1.72e-08 | 6 |
hematopoietic oligopotent progenitor cell | 8.78e-08 | 161 |
hematopoietic multipotent progenitor cell | 8.78e-08 | 161 |
basophil | 1.75e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
thymus | 9.21e-12 | 4 |
hemolymphoid system gland | 9.21e-12 | 4 |
thymic region | 9.21e-12 | 4 |
pharyngeal gland | 9.21e-12 | 4 |
thymus primordium | 9.21e-12 | 4 |
blood | 3.55e-11 | 15 |
haemolymphatic fluid | 3.55e-11 | 15 |
organism substance | 3.55e-11 | 15 |
pharyngeal epithelium | 5.44e-08 | 6 |
hemopoietic organ | 6.59e-07 | 7 |
immune organ | 6.59e-07 | 7 |