FFCP PHASE1:Hg19::chr2:47452905..47452914,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-18bp_to_ENST00000444361_5end | |association_with_transcript=-18bp_to_ENST00000444361_5end | ||
|cluster_id=chr2:47452905..47452914,+ | |||
|coexpression_cluster_id=C397 | |coexpression_cluster_id=C397 | ||
|description=CAGE_peak_1_at_ENST00000444361_5end | |description=CAGE_peak_1_at_ENST00000444361_5end | ||
|id=chr2:47452905..47452914,+ | |id=chr2:47452905..47452914,+ | ||
|ontology_enrichment_celltype=CL:0000188!6.01e-09!9;CL:0002622!2.08e-07!3;CL:0000680!7.12e-07!57;CL:0000056!7.12e-07!57;CL:0000355!7.12e-07!57 | |ontology_enrichment_celltype=CL:0000188!6.01e-09!9;CL:0002622!2.08e-07!3;CL:0000680!7.12e-07!57;CL:0000056!7.12e-07!57;CL:0000355!7.12e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0002262;2.72e-10;2!CL:0002549;2.72e-10;2!CL:1000398;2.72e-10;2!CL:0002575;2.72e-10;2!CL:0002598;2.72e-10;2!CL:0000346;1.93e-07;3!CL:1000428;1.93e-07;3!CL:0002590;2.12e-07;3!CL:0000515;2.79e-07;3!CL:0000182;6.54e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002575,2.07e-10,2;CL:0002262,2.27e-10,2;CL:1000398,2.27e-10,2;CL:0002598,2.72e-10,2;CL:0002549,3.27e-10,2;CL:0000346,1.93e-07,3;CL:1000428,1.93e-07,3;CL:0002590,2.05e-07,3;CL:0000182,6.35e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.84e-07;11 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3111;1.42e-19;1!DOID:3603;1.42e-19;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,1.56e-19,1;DOID:3603,1.56e-19,1 | |||
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|ontology_enrichment_uberon_v019=UBERON:0005284;1.95e-15;5!UBERON:0001281;2.72e-10;2!UBERON:0003497;2.72e-10;2!UBERON:0003909;2.72e-10;2!UBERON:0005629;2.72e-10;2!UBERON:0003835;2.72e-10;2!UBERON:0005358;2.72e-10;2!UBERON:0001886;2.72e-10;2!UBERON:0004086;2.72e-10;2!UBERON:0005282;2.72e-10;2!UBERON:0005281;2.72e-10;2!UBERON:0002107;4.05e-09;19!UBERON:0006925;4.05e-09;19!UBERON:0006876;1.59e-07;11!UBERON:0000412;1.93e-07;3!UBERON:0001992;1.93e-07;3!UBERON:0001280;2.79e-07;3!UBERON:0004647;2.79e-07;3!UBERON:0002423;4.60e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005284,2.17e-15,5;UBERON:0001281,2.27e-10,2;UBERON:0003497,2.27e-10,2;UBERON:0003909,2.27e-10,2;UBERON:0003835,2.27e-10,2;UBERON:0005629,3.27e-10,2;UBERON:0005358,3.27e-10,2;UBERON:0001886,3.27e-10,2;UBERON:0004086,3.27e-10,2;UBERON:0005282,3.27e-10,2;UBERON:0005281,3.27e-10,2;UBERON:0002107,3.83e-09,19;UBERON:0006925,3.83e-09,19;UBERON:0008836,3.83e-09,19;UBERON:0008835,5.66e-08,22;UBERON:0003894,5.66e-08,22;UBERON:0009854,1.19e-07,23;UBERON:0006876,1.67e-07,11;UBERON:0000412,1.93e-07,3;UBERON:0001992,1.93e-07,3;UBERON:0001280,2.47e-07,3;UBERON:0004647,2.47e-07,3;UBERON:0005171,2.47e-07,3;UBERON:0007499,4.41e-07,25;UBERON:0009497,4.41e-07,25;UBERON:0000015,4.41e-07,25;UBERON:0002423,4.41e-07,25;UBERON:0006235,4.41e-07,25;UBERON:0004161,4.41e-07,25;UBERON:0005256,6.85e-07,122;UBERON:0009856,7.88e-07,26 | |||
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| ||
|short_description=p1@ENST00000444361 | |short_description=p1@ENST00000444361 | ||
}} | }} |
Latest revision as of 10:34, 29 July 2015
Short description: | p1@ENST00000444361 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000444361_5end |
Coexpression cluster: | C397_mesenchymal_Myoblast_rhabdomyosarcoma_Hepatic_Melanocyte_astrocytoma_Skeletal |
Association with transcript: | -18bp_to_ENST00000444361_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system pericyte | 2.07e-10 | 2 |
endothelial cell of sinusoid | 2.27e-10 | 2 |
endothelial cell of hepatic sinusoid | 2.27e-10 | 2 |
bronchial smooth muscle cell | 2.72e-10 | 2 |
fibroblast of choroid plexus | 3.27e-10 | 2 |
hair follicle dermal papilla cell | 1.93e-07 | 3 |
stem cell of epidermis | 1.93e-07 | 3 |
smooth muscle cell of the brain vasculature | 2.05e-07 | 3 |
hepatocyte | 6.35e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
brain vasculature | 2.17e-15 | 5 |
hepatic sinusoid | 2.27e-10 | 2 |
abdomen blood vessel | 2.27e-10 | 2 |
sinusoid | 2.27e-10 | 2 |
abdominal segment blood vessel | 2.27e-10 | 2 |
vascular plexus | 3.27e-10 | 2 |
ventricle of nervous system | 3.27e-10 | 2 |
choroid plexus | 3.27e-10 | 2 |
brain ventricle | 3.27e-10 | 2 |
ventricular system of brain | 3.27e-10 | 2 |
ventricular system of central nervous system | 3.27e-10 | 2 |
liver | 3.83e-09 | 19 |
digestive gland | 3.83e-09 | 19 |
liver bud | 3.83e-09 | 19 |
hepatic diverticulum | 5.66e-08 | 22 |
liver primordium | 5.66e-08 | 22 |
digestive tract diverticulum | 1.19e-07 | 23 |
vasculature of organ | 1.67e-07 | 11 |
dermal papilla | 1.93e-07 | 3 |
papillary layer of dermis | 1.93e-07 | 3 |
liver parenchyma | 2.47e-07 | 3 |
liver lobule | 2.47e-07 | 3 |
hepatic duct | 2.47e-07 | 3 |
epithelial sac | 4.41e-07 | 25 |
epithelium of foregut-midgut junction | 4.41e-07 | 25 |
anatomical boundary | 4.41e-07 | 25 |
hepatobiliary system | 4.41e-07 | 25 |
foregut-midgut junction | 4.41e-07 | 25 |
septum transversum | 4.41e-07 | 25 |
trunk mesenchyme | 6.85e-07 | 122 |
sac | 7.88e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 1.56e-19 | 1 |
mucinous cystadenocarcinoma | 1.56e-19 | 1 |