FFCP PHASE1:Hg19::chr7:142498763..142498785,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=38bp_to_AJ568018_5end | |association_with_transcript=38bp_to_AJ568018_5end | ||
|cluster_id=chr7:142498763..142498785,+ | |||
|coexpression_cluster_id=C3185 | |coexpression_cluster_id=C3185 | ||
|description=CAGE_peak_3_at_AJ568018_5end | |description=CAGE_peak_3_at_AJ568018_5end | ||
|id=chr7:142498763..142498785,+ | |id=chr7:142498763..142498785,+ | ||
|ontology_enrichment_celltype=CL:0000084!4.42e-35!25;CL:0000827!4.42e-35!25;CL:0000791!1.20e-30!18;CL:0000789!1.20e-30!18;CL:0002420!1.20e-30!18;CL:0002419!1.20e-30!18;CL:0000790!1.20e-30!18;CL:0000542!3.59e-28!53;CL:0000051!3.59e-28!53;CL:0000838!3.69e-27!52;CL:0000625!1.20e-19!11;CL:0002087!7.15e-14!119;CL:0000738!2.32e-12!140;CL:0000624!2.71e-11!6;CL:0002031!1.11e-09!124;CL:0000037!1.31e-09!172;CL:0000566!1.31e-09!172;CL:0000988!1.32e-09!182;CL:0002032!6.92e-08!165;CL:0000837!6.92e-08!165 | |ontology_enrichment_celltype=CL:0000084!4.42e-35!25;CL:0000827!4.42e-35!25;CL:0000791!1.20e-30!18;CL:0000789!1.20e-30!18;CL:0002420!1.20e-30!18;CL:0002419!1.20e-30!18;CL:0000790!1.20e-30!18;CL:0000542!3.59e-28!53;CL:0000051!3.59e-28!53;CL:0000838!3.69e-27!52;CL:0000625!1.20e-19!11;CL:0002087!7.15e-14!119;CL:0000738!2.32e-12!140;CL:0000624!2.71e-11!6;CL:0002031!1.11e-09!124;CL:0000037!1.31e-09!172;CL:0000566!1.31e-09!172;CL:0000988!1.32e-09!182;CL:0002032!6.92e-08!165;CL:0000837!6.92e-08!165 | ||
|ontology_enrichment_celltype_v019=CL:0000084;3.17e-52;25!CL:0000791;1.52e-45;18!CL:0000789;1.52e-45;18!CL:0002419;1.52e-45;18!CL:0000625;4.17e-34;11!CL:0000542;3.43e-16;53!CL:0000624;5.30e-16;6!CL:0000898;3.21e-12;3!CL:0000815;6.71e-09;2!CL:0000792;6.71e-09;2!CL:0002677;6.71e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,2.25e-52,25;CL:0000827,2.25e-52,25;CL:0000791,7.26e-46,18;CL:0000789,7.26e-46,18;CL:0002420,7.26e-46,18;CL:0002419,7.26e-46,18;CL:0000790,7.26e-46,18;CL:0000625,3.16e-34,11;CL:0000838,6.25e-28,52;CL:0000542,2.64e-27,53;CL:0000051,2.64e-27,53;CL:0000624,3.29e-16,6;CL:0000898,1.86e-12,3;CL:0002087,7.53e-11,115;CL:0000738,1.97e-09,136;CL:0002031,3.86e-09,120;CL:0000815,5.40e-09,2;CL:0000792,5.40e-09,2;CL:0002677,5.40e-09,2 | |||
|ontology_enrichment_development_v019=CL:0000790;1.52e-45;18!CL:0000051;3.43e-16;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!4.59e-17!15;UBERON:0000179!4.59e-17!15;UBERON:0000463!4.59e-17!15;UBERON:0004177!9.98e-09!7;UBERON:0002370!3.79e-08!4;UBERON:0005058!3.79e-08!4;UBERON:0009113!3.79e-08!4;UBERON:0003295!3.79e-08!4;UBERON:0005562!3.79e-08!4 | |ontology_enrichment_uberon=UBERON:0000178!4.59e-17!15;UBERON:0000179!4.59e-17!15;UBERON:0000463!4.59e-17!15;UBERON:0004177!9.98e-09!7;UBERON:0002370!3.79e-08!4;UBERON:0005058!3.79e-08!4;UBERON:0009113!3.79e-08!4;UBERON:0003295!3.79e-08!4;UBERON:0005562!3.79e-08!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.38e-09;2!UBERON:0005058;1.38e-09;2!UBERON:0009113;1.38e-09;2!UBERON:0000178;2.16e-08;15!UBERON:0000179;2.16e-08;15!UBERON:0000463;2.16e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,7.53e-10,4;UBERON:0005058,7.53e-10,4;UBERON:0009113,7.53e-10,4;UBERON:0003295,7.53e-10,4;UBERON:0005562,7.53e-10,4;UBERON:0000178,2.35e-08,15;UBERON:0000179,2.35e-08,15;UBERON:0000463,2.35e-08,15 | |||
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| ||
|short_description=p3@AJ568018 | |short_description=p3@AJ568018 | ||
}} | }} |
Latest revision as of 06:58, 31 July 2015
Short description: | p3@AJ568018 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_AJ568018_5end |
Coexpression cluster: | C3185_chronic_acute_thymus_CD4_Hodgkin_CD8_NK |
Association with transcript: | 38bp_to_AJ568018_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 2.25e-52 | 25 |
pro-T cell | 2.25e-52 | 25 |
mature alpha-beta T cell | 7.26e-46 | 18 |
alpha-beta T cell | 7.26e-46 | 18 |
immature T cell | 7.26e-46 | 18 |
mature T cell | 7.26e-46 | 18 |
immature alpha-beta T cell | 7.26e-46 | 18 |
CD8-positive, alpha-beta T cell | 3.16e-34 | 11 |
lymphoid lineage restricted progenitor cell | 6.25e-28 | 52 |
lymphocyte | 2.64e-27 | 53 |
common lymphoid progenitor | 2.64e-27 | 53 |
CD4-positive, alpha-beta T cell | 3.29e-16 | 6 |
naive T cell | 1.86e-12 | 3 |
nongranular leukocyte | 7.53e-11 | 115 |
leukocyte | 1.97e-09 | 136 |
hematopoietic lineage restricted progenitor cell | 3.86e-09 | 120 |
regulatory T cell | 5.40e-09 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 5.40e-09 | 2 |
naive regulatory T cell | 5.40e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 7.53e-10 | 4 |
hemolymphoid system gland | 7.53e-10 | 4 |
thymic region | 7.53e-10 | 4 |
pharyngeal gland | 7.53e-10 | 4 |
thymus primordium | 7.53e-10 | 4 |
blood | 2.35e-08 | 15 |
haemolymphatic fluid | 2.35e-08 | 15 |
organism substance | 2.35e-08 | 15 |