FFCP PHASE1:Hg19::chr19:47113203..47113232,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr19:47113203..47113232,+
|short_description=p@chr19:47113203..47113232,+
|description=CAGE_peak_at_chr19:47113203..47113232,+
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:47113203..47113232,+ | |||
|coexpression_cluster_id=C1456 | |||
|description=CAGE_peak_at_chr19:47113203..47113232,+ | |||
|id=chr19:47113203..47113232,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!2.63e-13!32;UBERON:0002020!9.15e-13!34;UBERON:0003528!9.15e-13!34;UBERON:0001893!1.27e-12!34;UBERON:0002619!1.32e-12!22;UBERON:0002791!4.74e-12!33;UBERON:0001950!1.85e-11!20;UBERON:0005743!3.77e-11!86;UBERON:0001017!5.97e-11!82;UBERON:0001049!6.28e-11!57;UBERON:0005068!6.28e-11!57;UBERON:0006241!6.28e-11!57;UBERON:0007135!6.28e-11!57;UBERON:0000956!1.12e-10!25;UBERON:0000203!1.12e-10!25;UBERON:0002616!5.35e-10!59;UBERON:0000073!2.09e-09!94;UBERON:0001016!2.09e-09!94;UBERON:0002780!2.14e-09!41;UBERON:0001890!2.14e-09!41;UBERON:0006240!2.14e-09!41;UBERON:0000955!3.43e-09!69;UBERON:0006238!3.43e-09!69;UBERON:0007023!8.22e-09!115;UBERON:0003080!1.06e-08!42;UBERON:0003075!4.22e-08!86;UBERON:0007284!4.22e-08!86;UBERON:0002346!4.19e-07!90;UBERON:0003056!7.52e-07!61;UBERON:0000119!8.69e-07!312;UBERON:0000483!9.26e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.56e-20;22!UBERON:0001869;3.51e-19;32!UBERON:0001950;1.16e-18;20!UBERON:0003528;1.24e-18;34!UBERON:0002020;1.24e-18;34!UBERON:0002791;1.31e-17;32!UBERON:0000956;3.02e-17;25!UBERON:0000203;3.02e-17;25!UBERON:0001893;3.33e-17;34!UBERON:0002780;1.13e-11;41!UBERON:0001890;1.13e-11;41!UBERON:0000073;5.48e-10;53!UBERON:0002616;5.48e-10;53!UBERON:0000200;1.67e-08;6!UBERON:0000955;1.97e-08;68!UBERON:0001017;1.63e-07;75!UBERON:0001872;4.36e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001869,1.50e-22,32;UBERON:0003528,5.43e-22,34;UBERON:0002020,5.43e-22,34;UBERON:0002619,1.96e-21,22;UBERON:0001893,1.15e-20,34;UBERON:0002791,1.60e-20,32;UBERON:0001950,2.51e-19,20;UBERON:0000073,6.73e-19,53;UBERON:0002616,6.73e-19,53;UBERON:0001049,1.79e-18,56;UBERON:0005068,1.79e-18,56;UBERON:0006241,1.79e-18,56;UBERON:0007135,1.79e-18,56;UBERON:0001017,4.55e-18,81;UBERON:0000956,5.03e-18,25;UBERON:0000203,5.03e-18,25;UBERON:0002780,4.09e-17,41;UBERON:0001890,4.09e-17,41;UBERON:0003080,4.09e-17,41;UBERON:0006240,4.09e-17,41;UBERON:0000955,3.66e-16,68;UBERON:0006238,3.66e-16,68;UBERON:0001016,8.25e-15,89;UBERON:0003075,4.44e-12,82;UBERON:0007284,4.44e-12,82;UBERON:0002346,5.88e-11,86;UBERON:0003056,5.97e-11,61;UBERON:0007023,2.89e-10,114;UBERON:0010371,1.11e-09,104;UBERON:0000200,1.82e-08,6;UBERON:0001872,4.77e-07,5;UBERON:0004121,5.72e-07,171;UBERON:0000924,5.72e-07,171;UBERON:0006601,5.72e-07,171;UBERON:0004111,7.20e-07,240;UBERON:0000025,7.98e-07,192 | |||
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| ||
|short_description=p@chr19:47113203..47113232,+ | |||
}} | }} |
Latest revision as of 15:18, 27 July 2015
Short description: | p@chr19:47113203..47113232, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:47113203..47113232, + |
Coexpression cluster: | C1456_medial_amygdala_brain_hippocampus_occipital_putamen_parietal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebral hemisphere | 1.50e-22 | 32 |
brain grey matter | 5.43e-22 | 34 |
gray matter | 5.43e-22 | 34 |
regional part of cerebral cortex | 1.96e-21 | 22 |
telencephalon | 1.15e-20 | 34 |
regional part of telencephalon | 1.60e-20 | 32 |
neocortex | 2.51e-19 | 20 |
regional part of nervous system | 6.73e-19 | 53 |
regional part of brain | 6.73e-19 | 53 |
neural tube | 1.79e-18 | 56 |
neural rod | 1.79e-18 | 56 |
future spinal cord | 1.79e-18 | 56 |
neural keel | 1.79e-18 | 56 |
central nervous system | 4.55e-18 | 81 |
cerebral cortex | 5.03e-18 | 25 |
pallium | 5.03e-18 | 25 |
regional part of forebrain | 4.09e-17 | 41 |
forebrain | 4.09e-17 | 41 |
anterior neural tube | 4.09e-17 | 41 |
future forebrain | 4.09e-17 | 41 |
brain | 3.66e-16 | 68 |
future brain | 3.66e-16 | 68 |
nervous system | 8.25e-15 | 89 |
neural plate | 4.44e-12 | 82 |
presumptive neural plate | 4.44e-12 | 82 |
neurectoderm | 5.88e-11 | 86 |
pre-chordal neural plate | 5.97e-11 | 61 |
adult organism | 2.89e-10 | 114 |
ecto-epithelium | 1.11e-09 | 104 |
gyrus | 1.82e-08 | 6 |
parietal lobe | 4.77e-07 | 5 |
ectoderm-derived structure | 5.72e-07 | 171 |
ectoderm | 5.72e-07 | 171 |
presumptive ectoderm | 5.72e-07 | 171 |
anatomical conduit | 7.20e-07 | 240 |
tube | 7.98e-07 | 192 |