FF:11618-122A7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004979 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008356;DRR009228;DRZ000653;DRZ002038;DRZ012003;DRZ013388 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002195,CL:0002571 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000098 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!2.34!217.33!HAND2;;chr16:86544113..86544145,+!p1@FOXF1!2.02!128.11!FOXF1;;chr9:77112244..77112262,+!p1@RORB!1.93!93.94!RORB;;chr6:134210243..134210257,+!p1@TCF21!1.86!71.77!TCF21;;chr5:92918919..92918942,+!p1@NR2F1!1.74!229.48!NR2F1;;chr5:92919100..92919135,+!p3@NR2F1!1.59!45.75!NR2F1;;chr5:92918956..92918969,+!p4@NR2F1!1.58!40.03!NR2F1;;chr8:11561684..11561751,+!p1@GATA4!1.55!34.46!GATA4;;chr19:46801639..46801699,+!p1@HIF3A!1.54!33.89!HIF3A;;chr15:57511609..57511651,+!p2@TCF12!1.45!44.61!TCF12;;chr4:174451350..174451363,-!p3@HAND2!1.44!26.59!HAND2;;chr7:35293685..35293718,-!p1@TBX20!1.41!24.88!TBX20;;chr11:61520075..61520136,+!p1@C11orf9!1.36!45.90!C11orf9;;chr4:174450089..174450153,-!p2@HAND2!1.34!21.02!HAND2;;chr5:92919375..92919438,+!p6@NR2F1!1.33!22.02!NR2F1;;chr11:46299199..46299233,+!p1@CREB3L1!1.32!99.66!CREB3L1;;chr19:45971246..45971265,+!p1@FOSB!1.22!286.81!FOSB;;chr17:1959369..1959388,+!p2@HIC1!1.20!38.89!HIC1;;chr5:92919068..92919082,+!p5@NR2F1!1.19!17.30!NR2F1;;chr14:62162285..62162296,+!p3@HIF1A!1.17!72.06!HIF1A;;chr17:59477233..59477263,+!p1@TBX2!1.17!42.61!TBX2;;chr12:100867653..100867677,+!p2@NR1H4!1.16!13.58!NR1H4;;chr14:62162258..62162269,+!p2@HIF1A!1.12!117.38!HIF1A;;chr18:19749386..19749404,+!p2@GATA6!1.12!17.59!GATA6;;chr11:113930425..113930471,+!p1@ZBTB16!1.08!16.16!ZBTB16;;chr12:100867627..100867652,+!p1@NR1H4!1.07!10.72!NR1H4;;chr14:75745523..75745537,+!p1@FOS!1.03!1173.42!FOS;;chr18:19749541..19749557,+!p1@GATA6!1.02!30.31!GATA6;;chr15:83953397..83953425,-!p1@BNC1!1.01!10.58!BNC1;;chr12:100867736..100867750,+!p4@NR1H4!1.01!9.15!NR1H4;;chr5:92918894..92918912,+!p2@NR2F1!0.98!28.60!NR2F1;;chr5:134369905..134369972,-!p1@PITX1!0.98!13.15!PITX1;;chr9:73028814..73028895,-!p1@KLF9!0.97!84.36!KLF9;;chr2:66662281..66662308,+!p1@MEIS1!0.97!29.74!MEIS1;;chr3:126076242..126076257,-!p1@KLF15!0.96!10.29!KLF15;;chr12:100867777..100867788,+!p5@NR1H4!0.95!7.86!NR1H4;;chr3:69915385..69915438,+!p3@MITF!0.94!7.72!MITF;;chrX:106960285..106960299,-!p1@TSC22D3!0.93!211.04!TSC22D3;;chr20:48599506..48599526,+!p1@SNAI1!0.93!50.47!SNAI1;;chr17:59477197..59477212,+!p2@TBX2!0.93!13.30!TBX2;;chr15:96873984..96873999,+!p3@NR2F2!0.91!54.90!NR2F2;;chr7:19157248..19157268,-!p1@TWIST1!0.91!20.59!TWIST1;;chr3:141121847..141121868,+!p5@ZBTB38!0.91!11.15!ZBTB38;;chr6:1389789..1389821,+!p1@FOXF2!0.91!10.01!FOXF2;;chr9:73029219..73029289,-!p2@KLF9!0.90!21.73!KLF9;;chr8:48650715..48650735,-!p1@CEBPD!0.89!913.77!CEBPD;;chr7:149470641..149470694,-!p1@ZNF467!0.88!31.17!ZNF467;;chr17:59477275..59477286,+!p3@TBX2!0.88!8.86!TBX2;;chr5:137801160..137801176,+!p1@EGR1!0.87!675.57!EGR1;;chr2:66662249..66662267,+!p2@MEIS1!0.87!26.02!MEIS1;;chr5:137804484..137804498,+!p2@EGR1!0.86!26.16!EGR1;;chr13:37494365..37494381,-!p1@SMAD9!0.85!10.87!SMAD9;;chr17:46655704..46655718,-!p2@HOXB4!0.85!9.44!HOXB4;;chr5:92919312..92919334,+!p13@NR2F1!0.85!6.01!NR2F1;;chr12:52445218..52445237,+!p1@NR4A1!0.84!80.21!NR4A1;;chr14:74256787..74256858,-!p6@C14orf43!0.84!5.86!C14orf43;;chr3:126076264..126076305,-!p2@KLF15!0.83!8.15!KLF15;;chr17:46621937..46621966,-!p2@HOXB2!0.81!15.58!HOXB2;;chr17:46132044..46132080,+!p4@NFE2L1!0.81!5.43!NFE2L1;;chr5:92918860..92918871,+!p10@NR2F1!0.80!5.86!NR2F1;;chr7:27142290..27142310,-!p1@HOXA2!0.80!5.29!HOXA2;;chr17:46671108..46671147,-!p1@HOXB5!0.80!5.29!HOXB5;;chr20:42543441..42543497,+!p1@TOX2!0.79!25.16!TOX2;;chr5:92919452..92919496,+!p11@NR2F1!0.79!5.15!NR2F1;;chr9:73028786..73028797,-!p11@KLF9!0.79!5.15!KLF9;;chr11:46333934..46333963,+!p5@CREB3L1!0.78!5.00!CREB3L1;;chr8:106330656..106330684,+!p1@ZFPM2!0.77!13.73!ZFPM2;;chr11:113930401..113930422,+!p3@ZBTB16!0.77!4.86!ZBTB16;;chr15:96874012..96874042,+!p2@NR2F2!0.76!47.33!NR2F2;;chr1:59249688..59249703,-!p3@JUN!0.76!31.03!JUN;;chr2:121493425..121493474,+!p1@GLI2!0.76!11.15!GLI2;;chr1:164528616..164528660,+!p5@PBX1!0.76!10.29!PBX1;;chr15:96874145..96874166,+!p7@NR2F2!0.76!9.58!NR2F2;;chr7:149470540..149470596,-!p2@ZNF467!0.76!6.43!ZNF467;;chr2:66662396..66662407,+!p4@MEIS1!0.76!4.72!MEIS1;;chr14:62162224..62162254,+!p1@HIF1A!0.75!745.92!HIF1A;;chr16:8962202..8962222,-!p3@CARHSP1!0.75!8.58!CARHSP1;;chr2:121493492..121493537,+!p2@GLI2!0.75!8.01!GLI2;;chr11:46299539..46299620,+!p2@CREB3L1!0.74!8.01!CREB3L1;;chr15:96875041..96875052,+!p17@NR2F2!0.73!6.58!NR2F2;;chr12:57504975..57505019,-!p2@STAT6!0.72!19.02!STAT6;;chr2:239756671..239756732,+!p1@TWIST2!0.72!15.16!TWIST2;;chr7:19157043..19157088,-!p2@TWIST1!0.72!11.58!TWIST1;;chr10:63809106..63809127,+!p1@ARID5B!0.71!63.05!ARID5B;;chr14:75746722..75746777,+!p2@FOS!0.71!5.43!FOS;;chr3:141105705..141105770,+!p4@ZBTB38!0.71!5.15!ZBTB38;;chr17:46622070..46622109,-!p1@HOXB2!0.70!9.87!HOXB2;;chr5:134369879..134369898,-!p2@PITX1!0.70!4.00!PITX1;;chr5:92919194..92919204,+!p16@NR2F1!0.70!4.00!NR2F1;;chr19:46800289..46800327,+!p2@HIF3A!0.70!4.00!HIF3A;;chr15:42749722..42749739,-!p2@ZFP106!0.69!7.43!ZFP106;;chr18:53068911..53068935,-!p4@TCF4!0.69!4.43!TCF4;;chr1:164528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| 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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002571;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520hepatic%252c%2520donor2.CNhs12730.11618-122A7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520hepatic%252c%2520donor2.CNhs12730.11618-122A7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520hepatic%252c%2520donor2.CNhs12730.11618-122A7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520hepatic%252c%2520donor2.CNhs12730.11618-122A7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520hepatic%252c%2520donor2.CNhs12730.11618-122A7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11618-122A7 | |id=FF:11618-122A7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000098 | ||
|is_obsolete= | |||
|library_id=CNhs12730 | |||
|library_id_phase_based=2:CNhs12730 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11618 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11618 | |||
|name=Mesenchymal Stem Cells - hepatic, donor2 | |name=Mesenchymal Stem Cells - hepatic, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12730,LSID960,release012,COMPLETED | |profile_hcage=CNhs12730,LSID960,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=122 | |rna_box=122 | ||
|rna_catalog_number=SC7525 | |rna_catalog_number=SC7525 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.41123847955957e-212!GO:0005737;cytoplasm;2.31311425551865e-186!GO:0043231;intracellular membrane-bound organelle;1.45889853112225e-166!GO:0043227;membrane-bound organelle;1.84262072048335e-166!GO:0043226;organelle;9.58196813846528e-165!GO:0043229;intracellular organelle;2.69559321795347e-164!GO:0044444;cytoplasmic part;2.21109126023556e-141!GO:0044422;organelle part;1.07413469122825e-116!GO:0044446;intracellular organelle part;4.3094664494389e-115!GO:0044238;primary metabolic process;6.64728835251068e-87!GO:0044237;cellular metabolic process;8.24605712702793e-87!GO:0032991;macromolecular complex;5.24430676575658e-75!GO:0043170;macromolecule metabolic process;3.92490101126582e-74!GO:0005515;protein binding;8.52261915471579e-74!GO:0030529;ribonucleoprotein complex;9.41935875117185e-73!GO:0005739;mitochondrion;2.11638490606968e-64!GO:0043233;organelle lumen;4.03593435301119e-64!GO:0031974;membrane-enclosed lumen;4.03593435301119e-64!GO:0003723;RNA binding;9.97949406084698e-56!GO:0044428;nuclear part;1.26648154529489e-55!GO:0005634;nucleus;1.13266806418305e-52!GO:0031090;organelle membrane;2.64494788061984e-52!GO:0019538;protein metabolic process;7.1270678607759e-51!GO:0005840;ribosome;4.57322278132597e-46!GO:0044260;cellular macromolecule metabolic process;1.04637190616152e-45!GO:0009058;biosynthetic process;2.33543114178732e-45!GO:0006412;translation;7.31073024163779e-45!GO:0044267;cellular protein metabolic process;1.86787069892992e-44!GO:0044429;mitochondrial part;4.99137728496525e-43!GO:0016043;cellular component organization and biogenesis;4.78139228593603e-42!GO:0015031;protein transport;8.15421800868803e-42!GO:0033036;macromolecule localization;1.96297252734183e-41!GO:0003735;structural constituent of ribosome;6.85960051363306e-40!GO:0044249;cellular biosynthetic process;1.54714889138632e-39!GO:0008104;protein localization;1.25331128591676e-38!GO:0045184;establishment of protein localization;1.48155565875597e-38!GO:0006396;RNA processing;4.44434390363766e-38!GO:0031967;organelle envelope;9.45052896083697e-38!GO:0031975;envelope;2.33558351530086e-37!GO:0005829;cytosol;6.84264123989151e-37!GO:0009059;macromolecule biosynthetic process;7.21871870322818e-37!GO:0043283;biopolymer metabolic process;7.2791918075363e-36!GO:0043234;protein complex;1.01444931185895e-35!GO:0010467;gene expression;6.67216187290395e-35!GO:0033279;ribosomal subunit;8.87729353388495e-35!GO:0031981;nuclear lumen;1.47889823349204e-34!GO:0046907;intracellular transport;4.50040506641761e-32!GO:0016071;mRNA metabolic process;2.24513964633208e-31!GO:0008380;RNA splicing;6.01028098092534e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.67225090766315e-28!GO:0005740;mitochondrial envelope;1.12905177523706e-27!GO:0065003;macromolecular complex assembly;4.34818838563201e-27!GO:0006397;mRNA processing;7.124683672347e-27!GO:0006886;intracellular protein transport;7.39145135164336e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.03424317006622e-26!GO:0031966;mitochondrial membrane;2.58710469467058e-26!GO:0019866;organelle inner membrane;2.16789737507703e-25!GO:0005783;endoplasmic reticulum;2.88486895533218e-25!GO:0022607;cellular component assembly;1.18106949736676e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.82588300341007e-24!GO:0005743;mitochondrial inner membrane;9.61499378879793e-24!GO:0012505;endomembrane system;8.06022319371682e-23!GO:0006996;organelle organization and biogenesis;1.24333923957757e-22!GO:0005654;nucleoplasm;3.21967464364417e-22!GO:0044445;cytosolic part;9.96312301674014e-22!GO:0006457;protein folding;7.01763033253063e-21!GO:0006119;oxidative phosphorylation;1.41710351855842e-20!GO:0005681;spliceosome;1.69431284103761e-20!GO:0044432;endoplasmic reticulum part;9.13421927820786e-20!GO:0031980;mitochondrial lumen;2.27502386950497e-19!GO:0005759;mitochondrial matrix;2.27502386950497e-19!GO:0048770;pigment granule;3.10997234044736e-19!GO:0042470;melanosome;3.10997234044736e-19!GO:0051641;cellular localization;4.89853737345693e-19!GO:0051649;establishment of cellular localization;5.91049429538462e-19!GO:0044451;nucleoplasm part;1.60907439706804e-18!GO:0044455;mitochondrial membrane part;4.18158138581868e-18!GO:0043228;non-membrane-bound organelle;4.43211593352876e-18!GO:0043232;intracellular non-membrane-bound organelle;4.43211593352876e-18!GO:0015934;large ribosomal subunit;5.38701211762677e-18!GO:0000166;nucleotide binding;8.37506963460737e-18!GO:0015935;small ribosomal subunit;1.10474660791592e-17!GO:0005794;Golgi apparatus;2.5331299005083e-17!GO:0016462;pyrophosphatase activity;4.61638888161277e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.97003461177857e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;6.41771180245857e-17!GO:0008134;transcription factor binding;1.80183442487878e-16!GO:0022618;protein-RNA complex assembly;1.80940168959486e-16!GO:0051186;cofactor metabolic process;2.2986375926398e-16!GO:0017111;nucleoside-triphosphatase activity;5.11866241808991e-16!GO:0044265;cellular macromolecule catabolic process;5.39656794568064e-16!GO:0016874;ligase activity;9.68933776801201e-16!GO:0044248;cellular catabolic process;1.61685991786226e-15!GO:0005746;mitochondrial respiratory chain;1.62825310626174e-15!GO:0003676;nucleic acid binding;3.27696785339352e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.48694187849882e-15!GO:0019941;modification-dependent protein catabolic process;7.64214134182058e-15!GO:0043632;modification-dependent macromolecule catabolic process;7.64214134182058e-15!GO:0044257;cellular protein catabolic process;8.79872350444e-15!GO:0006511;ubiquitin-dependent protein catabolic process;9.0528919954264e-15!GO:0006512;ubiquitin cycle;1.42038190820564e-14!GO:0048193;Golgi vesicle transport;1.55639722128963e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.76430922986264e-14!GO:0016070;RNA metabolic process;2.74620251460621e-14!GO:0043285;biopolymer catabolic process;3.60952852229093e-14!GO:0000502;proteasome complex (sensu Eukaryota);3.77850174024686e-14!GO:0006259;DNA metabolic process;4.34522998918129e-14!GO:0051082;unfolded protein binding;5.62821611923058e-14!GO:0009057;macromolecule catabolic process;5.97994441601964e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.65396912087381e-14!GO:0008135;translation factor activity, nucleic acid binding;8.14213532831952e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.28736180329386e-13!GO:0016192;vesicle-mediated transport;1.64773800995102e-13!GO:0005789;endoplasmic reticulum membrane;1.68944750038843e-13!GO:0006732;coenzyme metabolic process;1.68944750038843e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.92033975608613e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.37765483082446e-13!GO:0003954;NADH dehydrogenase activity;2.37765483082446e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.37765483082446e-13!GO:0006605;protein targeting;2.97807669138713e-13!GO:0032553;ribonucleotide binding;6.80170154687513e-13!GO:0032555;purine ribonucleotide binding;6.80170154687513e-13!GO:0005730;nucleolus;7.46533552375164e-13!GO:0030163;protein catabolic process;7.51970900960867e-13!GO:0005761;mitochondrial ribosome;7.89717472768176e-13!GO:0000313;organellar ribosome;7.89717472768176e-13!GO:0017076;purine nucleotide binding;1.2759201939905e-12!GO:0005793;ER-Golgi intermediate compartment;2.92782127602317e-12!GO:0007049;cell cycle;4.41715967534796e-12!GO:0043412;biopolymer modification;7.5485611240883e-12!GO:0042775;organelle ATP synthesis coupled electron transport;8.40968995237953e-12!GO:0042773;ATP synthesis coupled electron transport;8.40968995237953e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.15904188552368e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.64227348584051e-11!GO:0045271;respiratory chain complex I;1.64227348584051e-11!GO:0005747;mitochondrial respiratory chain complex I;1.64227348584051e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.25436060541579e-11!GO:0003712;transcription cofactor activity;4.79130852999182e-11!GO:0005635;nuclear envelope;6.52962135829865e-11!GO:0006464;protein modification process;6.92201612242883e-11!GO:0003743;translation initiation factor activity;1.03708822449371e-10!GO:0048523;negative regulation of cellular process;1.04684927228263e-10!GO:0006413;translational initiation;1.41273581976128e-10!GO:0009055;electron carrier activity;1.64501184343523e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.83418143551712e-10!GO:0000375;RNA splicing, via transesterification reactions;1.83418143551712e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.83418143551712e-10!GO:0006446;regulation of translational initiation;4.66792494961051e-10!GO:0031965;nuclear membrane;4.80137307800607e-10!GO:0008565;protein transporter activity;6.44195202812755e-10!GO:0012501;programmed cell death;9.08941049411821e-10!GO:0006366;transcription from RNA polymerase II promoter;1.46626943892535e-09!GO:0006915;apoptosis;2.14920059635087e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.19656661419032e-09!GO:0009259;ribonucleotide metabolic process;2.4121581768148e-09!GO:0016491;oxidoreductase activity;2.57422159066934e-09!GO:0006913;nucleocytoplasmic transport;2.770798978019e-09!GO:0050794;regulation of cellular process;2.83740852803848e-09!GO:0043687;post-translational protein modification;3.09695865074454e-09!GO:0009056;catabolic process;3.70591917125591e-09!GO:0006163;purine nucleotide metabolic process;4.25048894633283e-09!GO:0016604;nuclear body;4.36063293297133e-09!GO:0008219;cell death;4.88635966745777e-09!GO:0016265;death;4.88635966745777e-09!GO:0042254;ribosome biogenesis and assembly;5.91693141720013e-09!GO:0051169;nuclear transport;5.94342604203921e-09!GO:0003924;GTPase activity;6.4004570947756e-09!GO:0048519;negative regulation of biological process;6.63749639243674e-09!GO:0032559;adenyl ribonucleotide binding;7.35823402661051e-09!GO:0044453;nuclear membrane part;7.79676781185929e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.95133409604398e-09!GO:0006461;protein complex assembly;1.01922047572649e-08!GO:0005524;ATP binding;1.05639745089826e-08!GO:0009150;purine ribonucleotide metabolic process;1.10408942055228e-08!GO:0005788;endoplasmic reticulum lumen;1.29243046934556e-08!GO:0030554;adenyl nucleotide binding;1.60748704644086e-08!GO:0009060;aerobic respiration;1.81419475179123e-08!GO:0022402;cell cycle process;1.89080711915626e-08!GO:0006164;purine nucleotide biosynthetic process;2.47216158696593e-08!GO:0045333;cellular respiration;2.56157146223918e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.64810841204304e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.65064678108207e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.03589593185314e-08!GO:0051188;cofactor biosynthetic process;4.09887960534798e-08!GO:0008654;phospholipid biosynthetic process;4.33871145936587e-08!GO:0009260;ribonucleotide biosynthetic process;4.37618291988268e-08!GO:0015986;ATP synthesis coupled proton transport;4.51895208418075e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.51895208418075e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.79911279508525e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.79911279508525e-08!GO:0006974;response to DNA damage stimulus;4.81238835843e-08!GO:0017038;protein import;5.01743334129549e-08!GO:0051246;regulation of protein metabolic process;5.49543142314267e-08!GO:0009141;nucleoside triphosphate metabolic process;6.13160783479601e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.25713499157898e-08!GO:0005768;endosome;6.319176914937e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.95583615930282e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.95583615930282e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.95583615930282e-08!GO:0019787;small conjugating protein ligase activity;1.07237633716775e-07!GO:0008639;small protein conjugating enzyme activity;1.07237633716775e-07!GO:0016607;nuclear speck;1.08415073963212e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.13060225016844e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.13060225016844e-07!GO:0050789;regulation of biological process;1.22234336968219e-07!GO:0048475;coated membrane;1.26480488797841e-07!GO:0030117;membrane coat;1.26480488797841e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.65997556578727e-07!GO:0004842;ubiquitin-protein ligase activity;1.90173496844999e-07!GO:0006399;tRNA metabolic process;1.96722508335563e-07!GO:0030120;vesicle coat;2.18312001112268e-07!GO:0030662;coated vesicle membrane;2.18312001112268e-07!GO:0031982;vesicle;2.24211027620447e-07!GO:0016564;transcription repressor activity;2.35797046396901e-07!GO:0003714;transcription corepressor activity;2.47382965214538e-07!GO:0009109;coenzyme catabolic process;2.82278917502338e-07!GO:0006099;tricarboxylic acid cycle;2.92266012532714e-07!GO:0046356;acetyl-CoA catabolic process;2.92266012532714e-07!GO:0031988;membrane-bound vesicle;2.97764035645848e-07!GO:0044431;Golgi apparatus part;2.99318259689117e-07!GO:0016887;ATPase activity;3.40219430079006e-07!GO:0051187;cofactor catabolic process;3.74500632477664e-07!GO:0009117;nucleotide metabolic process;3.80984780484502e-07!GO:0042623;ATPase activity, coupled;3.94576301723699e-07!GO:0031410;cytoplasmic vesicle;4.05783633735286e-07!GO:0046034;ATP metabolic process;4.20604499766899e-07!GO:0016023;cytoplasmic membrane-bound vesicle;4.26134491131729e-07!GO:0000278;mitotic cell cycle;5.14391168566144e-07!GO:0016853;isomerase activity;5.16611392367247e-07!GO:0019829;cation-transporting ATPase activity;5.41036183796704e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.54882074812159e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.99937961604688e-07!GO:0004812;aminoacyl-tRNA ligase activity;5.99937961604688e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.99937961604688e-07!GO:0000074;regulation of progression through cell cycle;6.1123149961759e-07!GO:0065002;intracellular protein transport across a membrane;6.86292904005429e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.90299377446341e-07!GO:0051726;regulation of cell cycle;8.00116376766217e-07!GO:0043038;amino acid activation;8.07113420548898e-07!GO:0006418;tRNA aminoacylation for protein translation;8.07113420548898e-07!GO:0043039;tRNA aminoacylation;8.07113420548898e-07!GO:0006754;ATP biosynthetic process;8.44672577915057e-07!GO:0006753;nucleoside phosphate metabolic process;8.44672577915057e-07!GO:0006084;acetyl-CoA metabolic process;9.41301615879548e-07!GO:0005525;GTP binding;9.54380233543637e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.04241720953608e-06!GO:0016881;acid-amino acid ligase activity;1.12838689809457e-06!GO:0005643;nuclear pore;1.40415140251967e-06!GO:0005773;vacuole;1.43227516122424e-06!GO:0009108;coenzyme biosynthetic process;1.58688520209717e-06!GO:0031324;negative regulation of cellular metabolic process;1.70946185821549e-06!GO:0043069;negative regulation of programmed cell death;1.79354949058087e-06!GO:0006281;DNA repair;2.07443403378869e-06!GO:0005770;late endosome;2.12641014313915e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.32131109732846e-06!GO:0009719;response to endogenous stimulus;2.51529136929285e-06!GO:0005798;Golgi-associated vesicle;2.52392597532534e-06!GO:0043066;negative regulation of apoptosis;2.53912185036823e-06!GO:0046930;pore complex;2.7954261260329e-06!GO:0004386;helicase activity;2.81378723165152e-06!GO:0031252;leading edge;3.72991593034576e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.75686901775697e-06!GO:0016859;cis-trans isomerase activity;3.84347935243096e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.91681723615996e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;4.01787920661785e-06!GO:0008026;ATP-dependent helicase activity;4.36002196518019e-06!GO:0006752;group transfer coenzyme metabolic process;4.63049469700211e-06!GO:0032561;guanyl ribonucleotide binding;4.63049469700211e-06!GO:0019001;guanyl nucleotide binding;4.63049469700211e-06!GO:0005667;transcription factor complex;4.95601524319819e-06!GO:0008610;lipid biosynthetic process;4.97165270452966e-06!GO:0008361;regulation of cell size;5.31640472489644e-06!GO:0043067;regulation of programmed cell death;5.8946055221689e-06!GO:0042981;regulation of apoptosis;5.98469021338692e-06!GO:0043566;structure-specific DNA binding;6.12144669546777e-06!GO:0015980;energy derivation by oxidation of organic compounds;6.37051927577804e-06!GO:0051170;nuclear import;6.56735645543728e-06!GO:0045786;negative regulation of progression through cell cycle;6.59968632689004e-06!GO:0051276;chromosome organization and biogenesis;6.60626952324748e-06!GO:0030532;small nuclear ribonucleoprotein complex;6.61991018485471e-06!GO:0006793;phosphorus metabolic process;7.16880785796399e-06!GO:0006796;phosphate metabolic process;7.16880785796399e-06!GO:0007005;mitochondrion organization and biogenesis;7.16880785796399e-06!GO:0045259;proton-transporting ATP synthase complex;7.47554315879229e-06!GO:0006916;anti-apoptosis;8.2230609574985e-06!GO:0050657;nucleic acid transport;8.63419750585493e-06!GO:0051236;establishment of RNA localization;8.63419750585493e-06!GO:0050658;RNA transport;8.63419750585493e-06!GO:0016740;transferase activity;9.00297930270498e-06!GO:0016049;cell growth;9.44781326397501e-06!GO:0006403;RNA localization;9.86953916551878e-06!GO:0006613;cotranslational protein targeting to membrane;9.89552256792831e-06!GO:0006323;DNA packaging;9.96898086565296e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.99161993091577e-06!GO:0065004;protein-DNA complex assembly;1.01723314255875e-05!GO:0006091;generation of precursor metabolites and energy;1.021503226898e-05!GO:0016787;hydrolase activity;1.06472579126071e-05!GO:0000245;spliceosome assembly;1.14740952294842e-05!GO:0000323;lytic vacuole;1.20211146896671e-05!GO:0005764;lysosome;1.20211146896671e-05!GO:0006606;protein import into nucleus;1.34214943320077e-05!GO:0006364;rRNA processing;1.47213095448525e-05!GO:0051789;response to protein stimulus;1.53849018903775e-05!GO:0006986;response to unfolded protein;1.53849018903775e-05!GO:0045454;cell redox homeostasis;1.58860300434928e-05!GO:0032446;protein modification by small protein conjugation;1.6743172931057e-05!GO:0000139;Golgi membrane;1.79399385590257e-05!GO:0016126;sterol biosynthetic process;2.28310309610266e-05!GO:0004298;threonine endopeptidase activity;2.37514570485597e-05!GO:0016567;protein ubiquitination;2.41640699832919e-05!GO:0016310;phosphorylation;2.45558384413223e-05!GO:0016072;rRNA metabolic process;2.49964346374029e-05!GO:0003713;transcription coactivator activity;2.64584359718216e-05!GO:0044440;endosomal part;2.73011189470115e-05!GO:0010008;endosome membrane;2.73011189470115e-05!GO:0030133;transport vesicle;2.74319669136231e-05!GO:0009892;negative regulation of metabolic process;2.82416246484477e-05!GO:0044262;cellular carbohydrate metabolic process;3.03775529343415e-05!GO:0005791;rough endoplasmic reticulum;3.06714133216487e-05!GO:0003697;single-stranded DNA binding;3.07635336318661e-05!GO:0030867;rough endoplasmic reticulum membrane;3.24944988355621e-05!GO:0001558;regulation of cell growth;3.51655015105267e-05!GO:0065007;biological regulation;3.67676205578333e-05!GO:0019867;outer membrane;3.73417628382573e-05!GO:0031968;organelle outer membrane;3.73908708263587e-05!GO:0046474;glycerophospholipid biosynthetic process;4.13876667623233e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.43214325332058e-05!GO:0003724;RNA helicase activity;4.93714789811031e-05!GO:0006082;organic acid metabolic process;5.4054492433862e-05!GO:0019752;carboxylic acid metabolic process;5.51011030885159e-05!GO:0000151;ubiquitin ligase complex;5.71967058769636e-05!GO:0016481;negative regulation of transcription;5.89278735676605e-05!GO:0016563;transcription activator activity;6.47972936832291e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.54028419375487e-05!GO:0046467;membrane lipid biosynthetic process;6.64569098935557e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.79733191806848e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.04027265495335e-05!GO:0043623;cellular protein complex assembly;7.07138445527026e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000105742685098446!GO:0005762;mitochondrial large ribosomal subunit;0.000123816853549967!GO:0000315;organellar large ribosomal subunit;0.000123816853549967!GO:0030036;actin cytoskeleton organization and biogenesis;0.000125155425751838!GO:0048522;positive regulation of cellular process;0.000129517242612682!GO:0016568;chromatin modification;0.000136422704160858!GO:0006260;DNA replication;0.000138545014848782!GO:0051028;mRNA transport;0.000175571481475235!GO:0033116;ER-Golgi intermediate compartment membrane;0.000175845004694985!GO:0005741;mitochondrial outer membrane;0.000179125291103807!GO:0006695;cholesterol biosynthetic process;0.000179637886029856!GO:0043021;ribonucleoprotein binding;0.000194704789192301!GO:0006333;chromatin assembly or disassembly;0.000213933801523224!GO:0051427;hormone receptor binding;0.000214426872868917!GO:0051301;cell division;0.000215531011036044!GO:0005905;coated pit;0.000230904386066175!GO:0019222;regulation of metabolic process;0.000235476610241878!GO:0006612;protein targeting to membrane;0.000245900061879614!GO:0005694;chromosome;0.000318585557132311!GO:0022403;cell cycle phase;0.00032850477199809!GO:0005048;signal sequence binding;0.000343677737154505!GO:0007243;protein kinase cascade;0.000349994933101397!GO:0000087;M phase of mitotic cell cycle;0.000366135798374139!GO:0030663;COPI coated vesicle membrane;0.000372185152536485!GO:0030126;COPI vesicle coat;0.000372185152536485!GO:0035257;nuclear hormone receptor binding;0.000392762680623716!GO:0030029;actin filament-based process;0.000408250089745149!GO:0006414;translational elongation;0.000409226840899045!GO:0009165;nucleotide biosynthetic process;0.000426240254268905!GO:0046489;phosphoinositide biosynthetic process;0.000436351903533847!GO:0007264;small GTPase mediated signal transduction;0.000461725143935616!GO:0007067;mitosis;0.000470025460652297!GO:0019899;enzyme binding;0.000472687954171072!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000480059085073847!GO:0000314;organellar small ribosomal subunit;0.000524457659563717!GO:0005763;mitochondrial small ribosomal subunit;0.000524457659563717!GO:0015630;microtubule cytoskeleton;0.000566441950902374!GO:0008250;oligosaccharyl transferase complex;0.000620149057140281!GO:0016779;nucleotidyltransferase activity;0.000654285783300991!GO:0030137;COPI-coated vesicle;0.000724481993901801!GO:0004576;oligosaccharyl transferase activity;0.000744777465046238!GO:0005885;Arp2/3 protein complex;0.000773282419399279!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000813981348919023!GO:0005769;early endosome;0.000822880359832834!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000829601870600122!GO:0006891;intra-Golgi vesicle-mediated transport;0.000855661680121362!GO:0030027;lamellipodium;0.000868838743018084!GO:0043284;biopolymer biosynthetic process;0.000876086738359396!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000889742807089251!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.000890275001117195!GO:0006979;response to oxidative stress;0.000914086130940315!GO:0051920;peroxiredoxin activity;0.000952672908023766!GO:0005813;centrosome;0.00095683069230415!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000961279856895789!GO:0003690;double-stranded DNA binding;0.000961279856895789!GO:0006066;alcohol metabolic process;0.000974017613014671!GO:0045892;negative regulation of transcription, DNA-dependent;0.000998257689975282!GO:0031418;L-ascorbic acid binding;0.00106744030471262!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00109838595924288!GO:0044255;cellular lipid metabolic process;0.00115067585043649!GO:0044427;chromosomal part;0.00119990811552575!GO:0008186;RNA-dependent ATPase activity;0.00121475408825045!GO:0004177;aminopeptidase activity;0.00125864944641981!GO:0030176;integral to endoplasmic reticulum membrane;0.00133503621883628!GO:0006520;amino acid metabolic process;0.00139279916997615!GO:0007050;cell cycle arrest;0.00140359743673416!GO:0016125;sterol metabolic process;0.00151684238809509!GO:0018196;peptidyl-asparagine modification;0.00157297823508562!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00157297823508562!GO:0000785;chromatin;0.00162782950984812!GO:0043681;protein import into mitochondrion;0.00169823575187564!GO:0007010;cytoskeleton organization and biogenesis;0.00172463039686654!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00190154909602958!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00190154909602958!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00190154909602958!GO:0031543;peptidyl-proline dioxygenase activity;0.00191642468755016!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00196043351470853!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00205178491989137!GO:0016044;membrane organization and biogenesis;0.00207973273641301!GO:0048518;positive regulation of biological process;0.0021974024272913!GO:0019843;rRNA binding;0.00220177498903203!GO:0005815;microtubule organizing center;0.00220436217941316!GO:0048500;signal recognition particle;0.00225324284520713!GO:0006650;glycerophospholipid metabolic process;0.00257983663298566!GO:0030134;ER to Golgi transport vesicle;0.00261342326527238!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00261673913910692!GO:0051287;NAD binding;0.00272712586014615!GO:0030659;cytoplasmic vesicle membrane;0.00294374409522155!GO:0051087;chaperone binding;0.00303978579772188!GO:0045893;positive regulation of transcription, DNA-dependent;0.00306839256632326!GO:0004004;ATP-dependent RNA helicase activity;0.00319115530622619!GO:0040008;regulation of growth;0.00322834623562512!GO:0051329;interphase of mitotic cell cycle;0.00324976200470956!GO:0016197;endosome transport;0.00330071036220021!GO:0048471;perinuclear region of cytoplasm;0.00330332772812057!GO:0016860;intramolecular oxidoreductase activity;0.00333193568792487!GO:0031072;heat shock protein binding;0.00341234167996252!GO:0009967;positive regulation of signal transduction;0.00371303533455672!GO:0003729;mRNA binding;0.00374543398168017!GO:0043488;regulation of mRNA stability;0.00383128237755038!GO:0043487;regulation of RNA stability;0.00383128237755038!GO:0003899;DNA-directed RNA polymerase activity;0.00383128237755038!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00386503977997707!GO:0006352;transcription initiation;0.00386503977997707!GO:0030127;COPII vesicle coat;0.00392717434259217!GO:0012507;ER to Golgi transport vesicle membrane;0.00392717434259217!GO:0048487;beta-tubulin binding;0.00396152464009542!GO:0042802;identical protein binding;0.00401007509165828!GO:0019798;procollagen-proline dioxygenase activity;0.00425681041230822!GO:0030521;androgen receptor signaling pathway;0.00438182145866946!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00439748941666518!GO:0006740;NADPH regeneration;0.00440014792194153!GO:0006098;pentose-phosphate shunt;0.00440014792194153!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00455547572718207!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00455547572718207!GO:0051168;nuclear export;0.00459450276918063!GO:0030118;clathrin coat;0.00467314898106627!GO:0007006;mitochondrial membrane organization and biogenesis;0.00472457280837746!GO:0006643;membrane lipid metabolic process;0.00507419869072628!GO:0006334;nucleosome assembly;0.00525224372864331!GO:0042158;lipoprotein biosynthetic process;0.00525224372864331!GO:0065009;regulation of a molecular function;0.00525224372864331!GO:0031902;late endosome membrane;0.00535363977230467!GO:0045792;negative regulation of cell size;0.00540857954730127!GO:0008139;nuclear localization sequence binding;0.00542100856781519!GO:0006807;nitrogen compound metabolic process;0.00542972574074826!GO:0030041;actin filament polymerization;0.00547285908518424!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00551131360737629!GO:0045047;protein targeting to ER;0.00551131360737629!GO:0005869;dynactin complex;0.00559671934391435!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.005797200542645!GO:0015399;primary active transmembrane transporter activity;0.005797200542645!GO:0006402;mRNA catabolic process;0.00582884585626397!GO:0046483;heterocycle metabolic process;0.00582884585626397!GO:0006950;response to stress;0.00588682850600806!GO:0006839;mitochondrial transport;0.00588771297327004!GO:0006497;protein amino acid lipidation;0.00595985069625383!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00595985069625383!GO:0015002;heme-copper terminal oxidase activity;0.00595985069625383!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00595985069625383!GO:0004129;cytochrome-c oxidase activity;0.00595985069625383!GO:0030658;transport vesicle membrane;0.00610681906607554!GO:0035258;steroid hormone receptor binding;0.00613855529023148!GO:0007040;lysosome organization and biogenesis;0.00616487094625772!GO:0030132;clathrin coat of coated pit;0.00619588724518554!GO:0001726;ruffle;0.00623486492074935!GO:0006007;glucose catabolic process;0.00624987026437059!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00628240600652786!GO:0016363;nuclear matrix;0.00631233683619996!GO:0005581;collagen;0.00633340597196024!GO:0005586;collagen type III;0.0063385339438561!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00640604510721336!GO:0019318;hexose metabolic process;0.00672129531121552!GO:0008312;7S RNA binding;0.00678768030197024!GO:0006506;GPI anchor biosynthetic process;0.00678768030197024!GO:0030308;negative regulation of cell growth;0.00686546419807904!GO:0030384;phosphoinositide metabolic process;0.00696185063488438!GO:0051252;regulation of RNA metabolic process;0.00696185063488438!GO:0006417;regulation of translation;0.00703649499108632!GO:0008092;cytoskeletal protein binding;0.00712705373839846!GO:0012506;vesicle membrane;0.00735307675995419!GO:0050662;coenzyme binding;0.00762397606270416!GO:0008047;enzyme activator activity;0.00782431789672583!GO:0051325;interphase;0.00785165300416075!GO:0044433;cytoplasmic vesicle part;0.00788175967302554!GO:0015631;tubulin binding;0.00820354786337797!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0085156785907815!GO:0000049;tRNA binding;0.00887515729538198!GO:0005996;monosaccharide metabolic process;0.00888310725941809!GO:0031497;chromatin assembly;0.00888527166717945!GO:0045941;positive regulation of transcription;0.00893737031842555!GO:0009308;amine metabolic process;0.00917769665989449!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00935517282222802!GO:0006626;protein targeting to mitochondrion;0.00948581748985639!GO:0005774;vacuolar membrane;0.00962880145325881!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00967319752210752!GO:0006383;transcription from RNA polymerase III promoter;0.00967832679911844!GO:0008180;signalosome;0.00978360013278207!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00980083678844255!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00980083678844255!GO:0006720;isoprenoid metabolic process;0.0101501840364995!GO:0000096;sulfur amino acid metabolic process;0.0101887264452685!GO:0006790;sulfur metabolic process;0.0102429511907182!GO:0030880;RNA polymerase complex;0.0103858309267327!GO:0017166;vinculin binding;0.0106813093043293!GO:0006505;GPI anchor metabolic process;0.0106813093043293!GO:0031625;ubiquitin protein ligase binding;0.0107052299361201!GO:0006818;hydrogen transport;0.0107400488537859!GO:0006519;amino acid and derivative metabolic process;0.010913833046168!GO:0015992;proton transport;0.0112544988855082!GO:0000059;protein import into nucleus, docking;0.0114260036654198!GO:0022890;inorganic cation transmembrane transporter activity;0.0115132035692489!GO:0016408;C-acyltransferase activity;0.0117289392814803!GO:0033673;negative regulation of kinase activity;0.0117289392814803!GO:0006469;negative regulation of protein kinase activity;0.0117289392814803!GO:0032984;macromolecular complex disassembly;0.0117813143412163!GO:0000279;M phase;0.0121693569937814!GO:0050811;GABA receptor binding;0.01252869057829!GO:0030145;manganese ion binding;0.0125673380158104!GO:0007033;vacuole organization and biogenesis;0.0129327808229235!GO:0006739;NADP metabolic process;0.0129882960525641!GO:0030660;Golgi-associated vesicle membrane;0.0130321910254207!GO:0006595;polyamine metabolic process;0.0131108029099941!GO:0030032;lamellipodium biogenesis;0.0133311631336806!GO:0008632;apoptotic program;0.0141782302421316!GO:0000339;RNA cap binding;0.0142476932735912!GO:0006892;post-Golgi vesicle-mediated transport;0.0142575051937139!GO:0016251;general RNA polymerase II transcription factor activity;0.0143872012627991!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0143872012627991!GO:0008652;amino acid biosynthetic process;0.0146225116421012!GO:0008203;cholesterol metabolic process;0.0146225116421012!GO:0051348;negative regulation of transferase activity;0.0147139252628946!GO:0006629;lipid metabolic process;0.0149519552926829!GO:0006644;phospholipid metabolic process;0.0149519552926829!GO:0031323;regulation of cellular metabolic process;0.0150862601849125!GO:0005637;nuclear inner membrane;0.0151772565613858!GO:0051128;regulation of cellular component organization and biogenesis;0.0151991121733071!GO:0006769;nicotinamide metabolic process;0.0153948364733368!GO:0006607;NLS-bearing substrate import into nucleus;0.0155360633968729!GO:0003756;protein disulfide isomerase activity;0.0156847952556855!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0156847952556855!GO:0006509;membrane protein ectodomain proteolysis;0.0158056211445458!GO:0033619;membrane protein proteolysis;0.0158056211445458!GO:0051539;4 iron, 4 sulfur cluster binding;0.0159123789972754!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0163504563023385!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0163504563023385!GO:0003711;transcription elongation regulator activity;0.0165745933564651!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0169926613891282!GO:0006672;ceramide metabolic process;0.0170959054603546!GO:0030518;steroid hormone receptor signaling pathway;0.0171086593868569!GO:0051101;regulation of DNA binding;0.0181531626468533!GO:0001516;prostaglandin biosynthetic process;0.0186200034481031!GO:0046457;prostanoid biosynthetic process;0.0186200034481031!GO:0003746;translation elongation factor activity;0.0189200465519625!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0190904609086062!GO:0000428;DNA-directed RNA polymerase complex;0.0190904609086062!GO:0033559;unsaturated fatty acid metabolic process;0.0191823351547003!GO:0006636;unsaturated fatty acid biosynthetic process;0.0191823351547003!GO:0016407;acetyltransferase activity;0.0193784367347378!GO:0005862;muscle thin filament tropomyosin;0.0195539824608989!GO:0050681;androgen receptor binding;0.0195822287854807!GO:0043241;protein complex disassembly;0.0196269721833661!GO:0009112;nucleobase metabolic process;0.0197118495582629!GO:0003702;RNA polymerase II transcription factor activity;0.0199808251544291!GO:0007034;vacuolar transport;0.0200054546949457!GO:0006749;glutathione metabolic process;0.0200054546949457!GO:0046519;sphingoid metabolic process;0.0206407698788197!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0211008431831085!GO:0043022;ribosome binding;0.02111481475164!GO:0035035;histone acetyltransferase binding;0.0214414150084096!GO:0031124;mRNA 3'-end processing;0.0214414150084096!GO:0008286;insulin receptor signaling pathway;0.0214414150084096!GO:0045045;secretory pathway;0.0219287110386161!GO:0051540;metal cluster binding;0.0219709898141823!GO:0051536;iron-sulfur cluster binding;0.0219709898141823!GO:0006401;RNA catabolic process;0.0228702227094359!GO:0005832;chaperonin-containing T-complex;0.0231718818781677!GO:0016272;prefoldin complex;0.0233654384728631!GO:0044437;vacuolar part;0.0235087759169111!GO:0008097;5S rRNA binding;0.0241928399255235!GO:0005765;lysosomal membrane;0.0243924730468098!GO:0030119;AP-type membrane coat adaptor complex;0.0244407010746399!GO:0016584;nucleosome positioning;0.0247852171286731!GO:0051098;regulation of binding;0.0252204156361449!GO:0008154;actin polymerization and/or depolymerization;0.0255661091441311!GO:0005819;spindle;0.0257162219657897!GO:0031901;early endosome membrane;0.0257688130677725!GO:0008234;cysteine-type peptidase activity;0.025816865516444!GO:0005665;DNA-directed RNA polymerase II, core complex;0.025998675201213!GO:0006144;purine base metabolic process;0.026340575646568!GO:0043492;ATPase activity, coupled to movement of substances;0.0265578262604662!GO:0006733;oxidoreduction coenzyme metabolic process;0.0266343981786726!GO:0048037;cofactor binding;0.0270167431674504!GO:0000209;protein polyubiquitination;0.0271497111992381!GO:0005684;U2-dependent spliceosome;0.0273817932058773!GO:0045926;negative regulation of growth;0.0276991232302798!GO:0008033;tRNA processing;0.027732175708248!GO:0022411;cellular component disassembly;0.0279569531450232!GO:0006984;ER-nuclear signaling pathway;0.0286127991819861!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0286514154204417!GO:0000287;magnesium ion binding;0.0286979632109049!GO:0000082;G1/S transition of mitotic cell cycle;0.028847034385016!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0290398219911878!GO:0005975;carbohydrate metabolic process;0.0291121364377436!GO:0043624;cellular protein complex disassembly;0.0292793226431677!GO:0047485;protein N-terminus binding;0.0297938784908822!GO:0006767;water-soluble vitamin metabolic process;0.0301015771569157!GO:0005096;GTPase activator activity;0.0302080386495483!GO:0044452;nucleolar part;0.0303518294588754!GO:0031529;ruffle organization and biogenesis;0.0308822594557042!GO:0006778;porphyrin metabolic process;0.0319172915457483!GO:0033013;tetrapyrrole metabolic process;0.0319172915457483!GO:0009081;branched chain family amino acid metabolic process;0.0321445119694771!GO:0006518;peptide metabolic process;0.032810494827181!GO:0006376;mRNA splice site selection;0.0329752224180174!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0329752224180174!GO:0007021;tubulin folding;0.0329817402725143!GO:0022406;membrane docking;0.0329817402725143!GO:0048278;vesicle docking;0.0329817402725143!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0334995888439589!GO:0048468;cell development;0.0335763794957607!GO:0030833;regulation of actin filament polymerization;0.0335763794957607!GO:0016971;flavin-linked sulfhydryl oxidase activity;0.0341564700527457!GO:0031326;regulation of cellular biosynthetic process;0.0341595507578163!GO:0009889;regulation of biosynthetic process;0.0346163268643338!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0357486340075521!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0357486340075521!GO:0032906;transforming growth factor-beta2 production;0.0358481438513025!GO:0032909;regulation of transforming growth factor-beta2 production;0.0358481438513025!GO:0046365;monosaccharide catabolic process;0.0360477790532015!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0370423642247297!GO:0030131;clathrin adaptor complex;0.0371775035383786!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0386875047021219!GO:0008147;structural constituent of bone;0.0392238572576425!GO:0032507;maintenance of cellular protein localization;0.0393477200842224!GO:0004680;casein kinase activity;0.0395110570159954!GO:0009116;nucleoside metabolic process;0.0408852222417639!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0408852222417639!GO:0051270;regulation of cell motility;0.0413268466905271!GO:0018202;peptidyl-histidine modification;0.0417061763371108!GO:0008022;protein C-terminus binding;0.0422095732384615!GO:0051052;regulation of DNA metabolic process;0.0425926591679613!GO:0005801;cis-Golgi network;0.0436897002619972!GO:0004674;protein serine/threonine kinase activity;0.0438517282508556!GO:0043086;negative regulation of catalytic activity;0.0439188342448843!GO:0006302;double-strand break repair;0.0439188342448843!GO:0006904;vesicle docking during exocytosis;0.0439816009300315!GO:0030100;regulation of endocytosis;0.0444137387359829!GO:0001725;stress fiber;0.0444731881414784!GO:0032432;actin filament bundle;0.0444731881414784!GO:0051235;maintenance of localization;0.045279516438713!GO:0003923;GPI-anchor transamidase activity;0.0454247559155004!GO:0016255;attachment of GPI anchor to protein;0.0454247559155004!GO:0042765;GPI-anchor transamidase complex;0.0454247559155004!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0454820368072996!GO:0006779;porphyrin biosynthetic process;0.0454820368072996!GO:0033014;tetrapyrrole biosynthetic process;0.0454820368072996!GO:0003684;damaged DNA binding;0.0456264963147642!GO:0019362;pyridine nucleotide metabolic process;0.0464973456030265!GO:0006611;protein export from nucleus;0.0465334167568968!GO:0006118;electron transport;0.0472541581353757!GO:0015036;disulfide oxidoreductase activity;0.0473984105524978!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0473984105524978!GO:0005784;translocon complex;0.0474485899104629!GO:0006897;endocytosis;0.0477493971494663!GO:0010324;membrane invagination;0.0477493971494663!GO:0006338;chromatin remodeling;0.047859685266757!GO:0006350;transcription;0.0490340943639613!GO:0005100;Rho GTPase activator activity;0.0491170884900278!GO:0008299;isoprenoid biosynthetic process;0.0497386888097301 | |||
|sample_id=11618 | |sample_id=11618 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=liver | |sample_tissue=liver | ||
|top_motifs=NKX3-1:2.51647149534;TAL1_TCF{3,4,12}:1.88807786579;MYBL2:1.79258057216;HIF1A:1.68609456695;HSF1,2:1.68264733394;TEF:1.52461256342;SRF:1.45019896965;TFAP4:1.43626613243;HMGA1,2:1.43497346896;TLX1..3_NFIC{dimer}:1.4101030037;GLI1..3:1.39399335328;MAFB:1.33501093532;ZNF238:1.24264776634;HAND1,2:1.23863870193;NKX2-2,8:1.17661131447;NR3C1:1.17163133262;EBF1:1.14436586106;LHX3,4:1.05182437316;EN1,2:1.04825477313;CRX:1.02991186985;FOX{I1,J2}:0.998985845232;FOXL1:0.971544458378;HOX{A5,B5}:0.95971862341;AHR_ARNT_ARNT2:0.958188451139;TEAD1:0.950268526026;AIRE:0.941948185797;ZNF423:0.926814604542;PAX4:0.916160469571;TOPORS:0.913926889962;ALX4:0.899381319762;HES1:0.883730926817;UFEwm:0.858916282639;ATF6:0.849150759568;GTF2A1,2:0.81244815414;NR6A1:0.787799330993;PATZ1:0.778767285034;NKX2-1,4:0.736950084392;RXRA_VDR{dimer}:0.722301171685;ESR1:0.707659032473;MAZ:0.694532465363;EVI1:0.676090579743;ZNF384:0.655371718986;ZIC1..3:0.652982217328;SMAD1..7,9:0.639082436788;IKZF1:0.63394525682;NKX6-1,2:0.62320093801;KLF4:0.607140865024;SOX5:0.577683047492;GZF1:0.57029776325;GTF2I:0.56636327961;FOX{D1,D2}:0.542758713131;NFATC1..3:0.538351820364;PAX5:0.501101878544;DBP:0.497526616869;RXR{A,B,G}:0.47583622726;GFI1B:0.444358518427;BPTF:0.419435200491;HOX{A4,D4}:0.413807069875;AR:0.370438645937;CDC5L:0.33848101316;TFCP2:0.333899552716;GATA4:0.303669763435;SP1:0.2875007681;XBP1:0.286245284043;HNF4A_NR2F1,2:0.284853647646;FOXD3:0.244950761001;TBX4,5:0.243729033965;NFE2L2:0.242321816396;RBPJ:0.22900105385;HLF:0.228550855934;MTE{core}:0.226423112796;NFE2L1:0.225626885884;STAT5{A,B}:0.218408153636;FOXA2:0.21730187576;CEBPA,B_DDIT3:0.217232772474;MYFfamily:0.217040813975;MZF1:0.215044365872;FOXM1:0.214031130944;HNF1A:0.208489246216;SOX17:0.207838275539;TBP:0.192240092351;ZBTB6:0.190462656787;CDX1,2,4:0.18689909712;PAX1,9:0.165265077095;ADNP_IRX_SIX_ZHX:0.161407789716;FOX{F1,F2,J1}:0.143761508869;ATF2:0.142581381483;RREB1:0.121858082598;PRDM1:0.11588677448;TP53:0.0923890230632;FOXP3:0.088358954756;MEF2{A,B,C,D}:0.0831112470784;JUN:0.0638720216279;NANOG:0.0600886523338;NANOG{mouse}:0.0501452144277;HIC1:0.0387973433627;ARID5B:0.00365810337814;RORA:-0.00260808245273;STAT1,3:-0.0132710906377;NFE2:-0.0227003149227;FOXO1,3,4:-0.0252542873557;NHLH1,2:-0.0289185725101;HOXA9_MEIS1:-0.0351118608565;YY1:-0.0437229307253;PAX6:-0.0838959855312;PBX1:-0.0916942145486;PAX8:-0.106744648428;PRRX1,2:-0.113648664989;EGR1..3:-0.11654437041;ATF4:-0.118084386352;XCPE1{core}:-0.12546123177;ZFP161:-0.126881294224;PPARG:-0.134678523318;RFX1:-0.134965909803;STAT2,4,6:-0.135562049325;NFIX:-0.144928419277;IRF1,2:-0.151750896141;TFAP2{A,C}:-0.151777117491;MTF1:-0.167540514455;FOXP1:-0.186623914151;FOS_FOS{B,L1}_JUN{B,D}:-0.189173583607;NR5A1,2:-0.191764047539;PAX3,7:-0.193607132228;FOXN1:-0.200629611718;MED-1{core}:-0.206542279048;POU5F1:-0.20663529509;NFY{A,B,C}:-0.211808267965;NR1H4:-0.213286801009;TGIF1:-0.250635750813;TFAP2B:-0.250769828321;MYB:-0.252356691563;RUNX1..3:-0.253850336734;LEF1_TCF7_TCF7L1,2:-0.254151770089;FOSL2:-0.255726062744;GFI1:-0.258527590283;ZNF143:-0.259341967303;bHLH_family:-0.264841984682;ATF5_CREB3:-0.27174367258;REST:-0.28298180001;GCM1,2:-0.289821604351;NFKB1_REL_RELA:-0.303801641588;CUX2:-0.335095420185;HMX1:-0.340449150964;ZBTB16:-0.34724208004;SREBF1,2:-0.347622866735;BACH2:-0.353472882688;POU1F1:-0.365298222763;NRF1:-0.382217812866;ELK1,4_GABP{A,B1}:-0.390390942415;RFX2..5_RFXANK_RFXAP:-0.396056840627;LMO2:-0.397044515127;GATA6:-0.400506089876;PAX2:-0.401599153451;POU6F1:-0.411578814015;IRF7:-0.412182214001;EP300:-0.417462491907;ZNF148:-0.421518001825;NKX3-2:-0.422085233296;ETS1,2:-0.451385627958;ESRRA:-0.466708348775;NKX2-3_NKX2-5:-0.496217853625;TFDP1:-0.521371025874;SPIB:-0.534522574267;NFIL3:-0.540352343362;HBP1_HMGB_SSRP1_UBTF:-0.575987508987;CREB1:-0.581609237447;T:-0.588164595272;ALX1:-0.608431055664;E2F1..5:-0.612208991432;DMAP1_NCOR{1,2}_SMARC:-0.615335713798;SOX2:-0.632354579873;VSX1,2:-0.63547706913;FOXQ1:-0.636002417754;ELF1,2,4:-0.636979138732;ONECUT1,2:-0.645422112224;SPZ1:-0.678880227087;SPI1:-0.702914890979;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.733723900248;ZEB1:-0.752891921275;SNAI1..3:-0.810435404467;BREu{core}:-0.817942353673;TLX2:-0.83518681974;HOX{A6,A7,B6,B7}:-0.844075644218;IKZF2:-0.991035818874;POU3F1..4:-0.998823561716;SOX{8,9,10}:-1.0248354458;POU2F1..3:-1.06917343107;OCT4_SOX2{dimer}:-1.1188951509;PDX1:-1.14121249309;PITX1..3:-1.24432020507;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.43109239122;MYOD1:-1.77904063308 | |top_motifs=NKX3-1:2.51647149534;TAL1_TCF{3,4,12}:1.88807786579;MYBL2:1.79258057216;HIF1A:1.68609456695;HSF1,2:1.68264733394;TEF:1.52461256342;SRF:1.45019896965;TFAP4:1.43626613243;HMGA1,2:1.43497346896;TLX1..3_NFIC{dimer}:1.4101030037;GLI1..3:1.39399335328;MAFB:1.33501093532;ZNF238:1.24264776634;HAND1,2:1.23863870193;NKX2-2,8:1.17661131447;NR3C1:1.17163133262;EBF1:1.14436586106;LHX3,4:1.05182437316;EN1,2:1.04825477313;CRX:1.02991186985;FOX{I1,J2}:0.998985845232;FOXL1:0.971544458378;HOX{A5,B5}:0.95971862341;AHR_ARNT_ARNT2:0.958188451139;TEAD1:0.950268526026;AIRE:0.941948185797;ZNF423:0.926814604542;PAX4:0.916160469571;TOPORS:0.913926889962;ALX4:0.899381319762;HES1:0.883730926817;UFEwm:0.858916282639;ATF6:0.849150759568;GTF2A1,2:0.81244815414;NR6A1:0.787799330993;PATZ1:0.778767285034;NKX2-1,4:0.736950084392;RXRA_VDR{dimer}:0.722301171685;ESR1:0.707659032473;MAZ:0.694532465363;EVI1:0.676090579743;ZNF384:0.655371718986;ZIC1..3:0.652982217328;SMAD1..7,9:0.639082436788;IKZF1:0.63394525682;NKX6-1,2:0.62320093801;KLF4:0.607140865024;SOX5:0.577683047492;GZF1:0.57029776325;GTF2I:0.56636327961;FOX{D1,D2}:0.542758713131;NFATC1..3:0.538351820364;PAX5:0.501101878544;DBP:0.497526616869;RXR{A,B,G}:0.47583622726;GFI1B:0.444358518427;BPTF:0.419435200491;HOX{A4,D4}:0.413807069875;AR:0.370438645937;CDC5L:0.33848101316;TFCP2:0.333899552716;GATA4:0.303669763435;SP1:0.2875007681;XBP1:0.286245284043;HNF4A_NR2F1,2:0.284853647646;FOXD3:0.244950761001;TBX4,5:0.243729033965;NFE2L2:0.242321816396;RBPJ:0.22900105385;HLF:0.228550855934;MTE{core}:0.226423112796;NFE2L1:0.225626885884;STAT5{A,B}:0.218408153636;FOXA2:0.21730187576;CEBPA,B_DDIT3:0.217232772474;MYFfamily:0.217040813975;MZF1:0.215044365872;FOXM1:0.214031130944;HNF1A:0.208489246216;SOX17:0.207838275539;TBP:0.192240092351;ZBTB6:0.190462656787;CDX1,2,4:0.18689909712;PAX1,9:0.165265077095;ADNP_IRX_SIX_ZHX:0.161407789716;FOX{F1,F2,J1}:0.143761508869;ATF2:0.142581381483;RREB1:0.121858082598;PRDM1:0.11588677448;TP53:0.0923890230632;FOXP3:0.088358954756;MEF2{A,B,C,D}:0.0831112470784;JUN:0.0638720216279;NANOG:0.0600886523338;NANOG{mouse}:0.0501452144277;HIC1:0.0387973433627;ARID5B:0.00365810337814;RORA:-0.00260808245273;STAT1,3:-0.0132710906377;NFE2:-0.0227003149227;FOXO1,3,4:-0.0252542873557;NHLH1,2:-0.0289185725101;HOXA9_MEIS1:-0.0351118608565;YY1:-0.0437229307253;PAX6:-0.0838959855312;PBX1:-0.0916942145486;PAX8:-0.106744648428;PRRX1,2:-0.113648664989;EGR1..3:-0.11654437041;ATF4:-0.118084386352;XCPE1{core}:-0.12546123177;ZFP161:-0.126881294224;PPARG:-0.134678523318;RFX1:-0.134965909803;STAT2,4,6:-0.135562049325;NFIX:-0.144928419277;IRF1,2:-0.151750896141;TFAP2{A,C}:-0.151777117491;MTF1:-0.167540514455;FOXP1:-0.186623914151;FOS_FOS{B,L1}_JUN{B,D}:-0.189173583607;NR5A1,2:-0.191764047539;PAX3,7:-0.193607132228;FOXN1:-0.200629611718;MED-1{core}:-0.206542279048;POU5F1:-0.20663529509;NFY{A,B,C}:-0.211808267965;NR1H4:-0.213286801009;TGIF1:-0.250635750813;TFAP2B:-0.250769828321;MYB:-0.252356691563;RUNX1..3:-0.253850336734;LEF1_TCF7_TCF7L1,2:-0.254151770089;FOSL2:-0.255726062744;GFI1:-0.258527590283;ZNF143:-0.259341967303;bHLH_family:-0.264841984682;ATF5_CREB3:-0.27174367258;REST:-0.28298180001;GCM1,2:-0.289821604351;NFKB1_REL_RELA:-0.303801641588;CUX2:-0.335095420185;HMX1:-0.340449150964;ZBTB16:-0.34724208004;SREBF1,2:-0.347622866735;BACH2:-0.353472882688;POU1F1:-0.365298222763;NRF1:-0.382217812866;ELK1,4_GABP{A,B1}:-0.390390942415;RFX2..5_RFXANK_RFXAP:-0.396056840627;LMO2:-0.397044515127;GATA6:-0.400506089876;PAX2:-0.401599153451;POU6F1:-0.411578814015;IRF7:-0.412182214001;EP300:-0.417462491907;ZNF148:-0.421518001825;NKX3-2:-0.422085233296;ETS1,2:-0.451385627958;ESRRA:-0.466708348775;NKX2-3_NKX2-5:-0.496217853625;TFDP1:-0.521371025874;SPIB:-0.534522574267;NFIL3:-0.540352343362;HBP1_HMGB_SSRP1_UBTF:-0.575987508987;CREB1:-0.581609237447;T:-0.588164595272;ALX1:-0.608431055664;E2F1..5:-0.612208991432;DMAP1_NCOR{1,2}_SMARC:-0.615335713798;SOX2:-0.632354579873;VSX1,2:-0.63547706913;FOXQ1:-0.636002417754;ELF1,2,4:-0.636979138732;ONECUT1,2:-0.645422112224;SPZ1:-0.678880227087;SPI1:-0.702914890979;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.733723900248;ZEB1:-0.752891921275;SNAI1..3:-0.810435404467;BREu{core}:-0.817942353673;TLX2:-0.83518681974;HOX{A6,A7,B6,B7}:-0.844075644218;IKZF2:-0.991035818874;POU3F1..4:-0.998823561716;SOX{8,9,10}:-1.0248354458;POU2F1..3:-1.06917343107;OCT4_SOX2{dimer}:-1.1188951509;PDX1:-1.14121249309;PITX1..3:-1.24432020507;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.43109239122;MYOD1:-1.77904063308 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11618-122A7;search_select_hide=table117:FF:11618-122A7 | |||
}} | }} | ||
Latest revision as of 18:12, 4 June 2020
| Name: | Mesenchymal Stem Cells - hepatic, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12730 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12730
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12730
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.878 |
| 10 | 10 | 0.864 |
| 100 | 100 | 0.275 |
| 101 | 101 | 0.967 |
| 102 | 102 | 0.05 |
| 103 | 103 | 0.179 |
| 104 | 104 | 0.547 |
| 105 | 105 | 0.914 |
| 106 | 106 | 0.262 |
| 107 | 107 | 0.0899 |
| 108 | 108 | 0.962 |
| 109 | 109 | 0.45 |
| 11 | 11 | 0.777 |
| 110 | 110 | 0.959 |
| 111 | 111 | 0.618 |
| 112 | 112 | 0.895 |
| 113 | 113 | 0.109 |
| 114 | 114 | 0.438 |
| 115 | 115 | 0.264 |
| 116 | 116 | 0.19 |
| 117 | 117 | 0.474 |
| 118 | 118 | 0.535 |
| 119 | 119 | 0.878 |
| 12 | 12 | 0.326 |
| 120 | 120 | 0.674 |
| 121 | 121 | 0.243 |
| 122 | 122 | 0.0151 |
| 123 | 123 | 0.0353 |
| 124 | 124 | 0.644 |
| 125 | 125 | 0.118 |
| 126 | 126 | 0.844 |
| 127 | 127 | 0.709 |
| 128 | 128 | 0.302 |
| 129 | 129 | 0.255 |
| 13 | 13 | 0.534 |
| 130 | 130 | 0.11 |
| 131 | 131 | 0.204 |
| 132 | 132 | 0.218 |
| 133 | 133 | 0.454 |
| 134 | 134 | 0.32 |
| 135 | 135 | 0.574 |
| 136 | 136 | 0.844 |
| 137 | 137 | 0.143 |
| 138 | 138 | 0.29 |
| 139 | 139 | 0.287 |
| 14 | 14 | 0.419 |
| 140 | 140 | 0.161 |
| 141 | 141 | 0.371 |
| 142 | 142 | 0.411 |
| 143 | 143 | 0.713 |
| 144 | 144 | 0.383 |
| 145 | 145 | 0.768 |
| 146 | 146 | 0.873 |
| 147 | 147 | 0.123 |
| 148 | 148 | 0.871 |
| 149 | 149 | 3.84817e-4 |
| 15 | 15 | 0.267 |
| 150 | 150 | 0.405 |
| 151 | 151 | 0.647 |
| 152 | 152 | 0.126 |
| 153 | 153 | 0.472 |
| 154 | 154 | 0.69 |
| 155 | 155 | 0.207 |
| 156 | 156 | 0.26 |
| 157 | 157 | 0.292 |
| 158 | 158 | 0.967 |
| 159 | 159 | 0.161 |
| 16 | 16 | 0.0219 |
| 160 | 160 | 0.34 |
| 161 | 161 | 0.565 |
| 162 | 162 | 0.0951 |
| 163 | 163 | 0.0367 |
| 164 | 164 | 0.058 |
| 165 | 165 | 0.897 |
| 166 | 166 | 0.0811 |
| 167 | 167 | 0.258 |
| 168 | 168 | 0.637 |
| 169 | 169 | 0.0185 |
| 17 | 17 | 0.888 |
| 18 | 18 | 0.493 |
| 19 | 19 | 0.00388 |
| 2 | 2 | 0.249 |
| 20 | 20 | 0.622 |
| 21 | 21 | 0.167 |
| 22 | 22 | 0.0488 |
| 23 | 23 | 0.184 |
| 24 | 24 | 0.446 |
| 25 | 25 | 0.0595 |
| 26 | 26 | 0.815 |
| 27 | 27 | 0.825 |
| 28 | 28 | 0.0732 |
| 29 | 29 | 0.324 |
| 3 | 3 | 0.62 |
| 30 | 30 | 0.629 |
| 31 | 31 | 0.279 |
| 32 | 32 | 7.30905e-16 |
| 33 | 33 | 0.863 |
| 34 | 34 | 0.656 |
| 35 | 35 | 0.454 |
| 36 | 36 | 0.369 |
| 37 | 37 | 0.599 |
| 38 | 38 | 0.514 |
| 39 | 39 | 0.449 |
| 4 | 4 | 0.478 |
| 40 | 40 | 0.708 |
| 41 | 41 | 0.0197 |
| 42 | 42 | 0.546 |
| 43 | 43 | 0.557 |
| 44 | 44 | 0.956 |
| 45 | 45 | 0.863 |
| 46 | 46 | 0.547 |
| 47 | 47 | 0.827 |
| 48 | 48 | 0.761 |
| 49 | 49 | 0.348 |
| 5 | 5 | 0.468 |
| 50 | 50 | 0.349 |
| 51 | 51 | 0.4 |
| 52 | 52 | 0.955 |
| 53 | 53 | 0.123 |
| 54 | 54 | 0.857 |
| 55 | 55 | 0.727 |
| 56 | 56 | 0.879 |
| 57 | 57 | 0.855 |
| 58 | 58 | 0.468 |
| 59 | 59 | 0.667 |
| 6 | 6 | 0.973 |
| 60 | 60 | 0.854 |
| 61 | 61 | 0.821 |
| 62 | 62 | 0.814 |
| 63 | 63 | 0.439 |
| 64 | 64 | 0.738 |
| 65 | 65 | 0.394 |
| 66 | 66 | 0.355 |
| 67 | 67 | 0.404 |
| 68 | 68 | 0.77 |
| 69 | 69 | 0.139 |
| 7 | 7 | 0.526 |
| 70 | 70 | 0.642 |
| 71 | 71 | 0.194 |
| 72 | 72 | 0.883 |
| 73 | 73 | 0.363 |
| 74 | 74 | 0.552 |
| 75 | 75 | 0.95 |
| 76 | 76 | 0.538 |
| 77 | 77 | 0.141 |
| 78 | 78 | 0.809 |
| 79 | 79 | 0.0262 |
| 8 | 8 | 0.255 |
| 80 | 80 | 0.113 |
| 81 | 81 | 0.71 |
| 82 | 82 | 0.802 |
| 83 | 83 | 0.359 |
| 84 | 84 | 0.121 |
| 85 | 85 | 0.0175 |
| 86 | 86 | 0.722 |
| 87 | 87 | 0.0308 |
| 88 | 88 | 0.118 |
| 89 | 89 | 0.427 |
| 9 | 9 | 0.437 |
| 90 | 90 | 0.824 |
| 91 | 91 | 0.81 |
| 92 | 92 | 0.239 |
| 93 | 93 | 0.153 |
| 94 | 94 | 0.652 |
| 95 | 95 | 0.929 |
| 96 | 96 | 0.654 |
| 97 | 97 | 0.573 |
| 98 | 98 | 0.343 |
| 99 | 99 | 0.0214 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12730
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000098 human hepatic mesenchymal stem cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002195 (hepatic stem cell)
0002571 (hepatic mesenchymal stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000098 (human hepatic mesenchymal stem cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
