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{{UBERON
{{UBERON
|id=UBERON:0000978
|alt_id=UBERON:FBbt_00004640-FMA_24979-MA_0000047-MIAA_0000095
|name=leg
|anatomical_img_id=FMA:24979
|namespace=
|def="The portion of the hindlimb that contains both the stylopod and zeugopod." [Wikipedia:Leg#Limb]
|xref=BTO:0000721;;EFO:0001411;;EHDAA:5151;;EHDAA:6176;;EHDAA:8289;;EHDAA2:0000972;;EMAPA:17489;;GAID:49;;MA:0000047;;MESH:A.01.378.610;;OpenCyc:Mx4rvViYzZwpEbGdrcN5Y29ycA;;VHOG:0000345
|is_a=UBERON:0004120;;UBERON:0006058
|synonym="lower extremity" RELATED [MESH:A.01.378.610];;"tetrapod leg" EXACT []
|comment=The term leg can mean: [1] an appendage on which an animal walks [2] the entire hindlimb of a tetrapod [3] the segment of a human leg between knee and ankle (cf FMA) [4] the region of a hindlimb include the stylopod and zeugopod, but excluding the autopod. We define this class as [4], and thus 'leg' is compltely analagous to 'arm'. For [1], see the class 'locomotive weight-bearing appendage'. For [2] we use 'hindlimb'. For [3] we use the less open to misinterpretation 'hindlimb zeugopod'.  Editor note: currently declared as overlapping foot, as AOs disagree over whether some ankle parts are in the leg or foot
|comment=The term leg can mean: [1] an appendage on which an animal walks [2] the entire hindlimb of a tetrapod [3] the segment of a human leg between knee and ankle (cf FMA) [4] the region of a hindlimb include the stylopod and zeugopod, but excluding the autopod. We define this class as [4], and thus 'leg' is compltely analagous to 'arm'. For [1], see the class 'locomotive weight-bearing appendage'. For [2] we use 'hindlimb'. For [3] we use the less open to misinterpretation 'hindlimb zeugopod'.  Editor note: currently declared as overlapping foot, as AOs disagree over whether some ankle parts are in the leg or foot
|alt_id=UBERON:FBbt_00004640-FMA_24979-MA_0000047-MIAA_0000095
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The portion of the hindlimb that contains both the stylopod and zeugopod." [Wikipedia:Leg#Limb]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000978
|is_a=UBERON:0006058 ;;UBERON:0008784
|is_obsolete=
|located_in=
|located_in=
|name=leg
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002103
|part_of=UBERON:0002103
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="lower extremity" RELATED [MESH:A.01.378.610];;"tetrapod leg" EXACT []
|union_of=
|xref=BTO:0000721;;EFO:0001411;;EHDAA2:0000972;;EHDAA:5151;;EHDAA:6176;;EHDAA:8289;;EMAPA:17489;;GAID:49;;MA:0000047;;MESH:A.01.378.610;;OpenCyc:Mx4rvViYzZwpEbGdrcN5Y29ycA;;VHOG:0000345
}}
}}

Latest revision as of 17:12, 12 September 2014

Name:leg
Namespace:FANTOM
Definition:"The portion of the hindlimb that contains both the stylopod and zeugopod." [Wikipedia:Leg#Limb]
Xrefs:
links:

BTO:0000721
EFO:0001411
EHDAA2:0000972
EHDAA:5151
EHDAA:6176
EHDAA:8289
EMAPA:17489
GAID:49
MA:0000047
MESH:A.01.378.610
OpenCyc:Mx4rvViYzZwpEbGdrcN5Y29ycA

VHOG:0000345
Synonyms: "lower extremity" RELATED [MESH:A.01.378.610]
"tetrapod leg" EXACT []
Comments:The term leg can mean: [1] an appendage on which an animal walks [2] the entire hindlimb of a tetrapod [3] the segment of a human leg between knee and ankle (cf FMA) [4] the region of a hindlimb include the stylopod and zeugopod, but excluding the autopod. We define this class as [4], and thus 'leg' is compltely analagous to 'arm'. For [1], see the class 'locomotive weight-bearing appendage'. For [2] we use 'hindlimb'. For [3] we use the less open to misinterpretation 'hindlimb zeugopod'. Editor note: currently declared as overlapping foot, as AOs disagree over whether some ankle parts are in the leg or foot
Alt_id: UBERON:FBbt_00004640-FMA_24979-MA_0000047-MIAA_0000095
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0006058(multi-limb segment region),UBERON:0008784(lower limb segment)
part_of:UBERON:0002103(hindlimb)



Children

part of:UBERON:0000376 (hindlimb stylopod),UBERON:0001383 (muscle of leg),UBERON:0001465 (knee),UBERON:0003569 (leg connective tissue),UBERON:0003823 (hindlimb zeugopod),UBERON:0004174 (leg joint),UBERON:0004466 (musculature of leg),UBERON:0005893 (leg bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000978 (leg), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_43f5e3fee8efef591cdda7625cb68fb6p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_43f5e3fee8efef591cdda7625cb68fb6p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_43f5e3fee8efef591cdda7625cb68fb6p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_43f5e3fee8efef591cdda7625cb68fb6p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr22:25535147..25535150, +
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_a205c5a72d97c26fa1778dac8162fd38p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_a205c5a72d97c26fa1778dac8162fd38p46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_a205c5a72d97c26fa1778dac8162fd38p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_a205c5a72d97c26fa1778dac8162fd38p77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_a205c5a72d97c26fa1778dac8162fd38p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_a205c5a72d97c26fa1778dac8162fd38p93@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_a205c5a72d97c26fa1778dac8162fd38p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_a205c5a72d97c26fa1778dac8162fd38p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_a205c5a72d97c26fa1778dac8162fd38p7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_a205c5a72d97c26fa1778dac8162fd38p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_a205c5a72d97c26fa1778dac8162fd38p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_a205c5a72d97c26fa1778dac8162fd38p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_a205c5a72d97c26fa1778dac8162fd38p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_a205c5a72d97c26fa1778dac8162fd38p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_a205c5a72d97c26fa1778dac8162fd38p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_a205c5a72d97c26fa1778dac8162fd38p46@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_a205c5a72d97c26fa1778dac8162fd38p108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_a205c5a72d97c26fa1778dac8162fd38p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_a205c5a72d97c26fa1778dac8162fd38p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_a205c5a72d97c26fa1778dac8162fd38p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_a205c5a72d97c26fa1778dac8162fd38p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_a205c5a72d97c26fa1778dac8162fd38p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_a205c5a72d97c26fa1778dac8162fd38p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_a205c5a72d97c26fa1778dac8162fd38p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_a205c5a72d97c26fa1778dac8162fd38p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_a205c5a72d97c26fa1778dac8162fd38p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_a205c5a72d97c26fa1778dac8162fd38p108@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_a205c5a72d97c26fa1778dac8162fd38p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_a205c5a72d97c26fa1778dac8162fd38p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_a205c5a72d97c26fa1778dac8162fd38p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_a205c5a72d97c26fa1778dac8162fd38p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_a205c5a72d97c26fa1778dac8162fd38p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_a205c5a72d97c26fa1778dac8162fd38p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_a205c5a72d97c26fa1778dac8162fd38p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_a205c5a72d97c26fa1778dac8162fd38p93@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_a205c5a72d97c26fa1778dac8162fd38p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_a205c5a72d97c26fa1778dac8162fd38p7@FLJ36848
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_a205c5a72d97c26fa1778dac8162fd38p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_a205c5a72d97c26fa1778dac8162fd38p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_a205c5a72d97c26fa1778dac8162fd38p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_a205c5a72d97c26fa1778dac8162fd38p77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_a205c5a72d97c26fa1778dac8162fd38p1@ENST00000430244, p1@uc003tvu.2
2.55e-98FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_87071814312013c7792190cdab31f7eap27@CLIP4
2.55e-98FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_87071814312013c7792190cdab31f7eap@chr2:152590465..152590472, -
2.55e-98FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_87071814312013c7792190cdab31f7eap@chr22:26299595..26299605, +
2.55e-98FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_87071814312013c7792190cdab31f7eap@chr10:29918007..29918031, -
2.55e-98FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_87071814312013c7792190cdab31f7eap@chr3:35732964..35732965, +
2.55e-98FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_87071814312013c7792190cdab31f7eap@chr3:69168368..69168389, -
2.55e-98FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_87071814312013c7792190cdab31f7eap27@CLIP4
2.55e-98FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_87071814312013c7792190cdab31f7eap@chr2:152590465..152590472, -
2.55e-98FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_87071814312013c7792190cdab31f7eap@chr6:125535391..125535409, +
2.55e-98FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_87071814312013c7792190cdab31f7eap@chr3:46924232..46924241, +
2.55e-98FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_87071814312013c7792190cdab31f7eap@chr10:97037060..97037066, -
2.55e-98FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_87071814312013c7792190cdab31f7eap@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_87071814312013c7792190cdab31f7eap38@CLIP1
2.55e-98FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_87071814312013c7792190cdab31f7eap@chr10:29918007..29918031, -
2.55e-98FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_87071814312013c7792190cdab31f7eap@chr12:69653866..69653876, +
2.55e-98FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_87071814312013c7792190cdab31f7eap@chr6:125535391..125535409, +
2.55e-98FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_87071814312013c7792190cdab31f7eap@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_87071814312013c7792190cdab31f7eap@chr12:69653866..69653876, +
2.55e-98FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_87071814312013c7792190cdab31f7eap@chr5:95180155..95180172, +
2.55e-98FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_87071814312013c7792190cdab31f7eap@chr12:102079632..102079647, -
2.55e-98FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_87071814312013c7792190cdab31f7eap@chr18:8608021..8608050, +
2.55e-98FFCP PHASE2:Hg19::chr18:8608021..8608050,+#_87071814312013c7792190cdab31f7eap@chr18:8608021..8608050, +
2.55e-98FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_87071814312013c7792190cdab31f7eap@chr2:152566311..152566321, -
2.55e-98FFCP PHASE2:Hg19::chr5:95180155..95180172,+#_87071814312013c7792190cdab31f7eap@chr5:95180155..95180172, +
2.55e-98FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_87071814312013c7792190cdab31f7eap38@CLIP1
2.55e-98FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_87071814312013c7792190cdab31f7eap73@XIRP2

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