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{{UBERON
{{UBERON
|id=UBERON:0003281
|alt_id=
|name=mesentery of stomach
|namespace=
|def="The portion of the primitive mesentery that encloses the stomach; from its dorsal sheet, the greater omentum develops, and from its ventral sheet, the lesser omentum." [http://medical-dictionary.thefreedictionary.com/mesogastrium]
|xref=EHDAA:2999;;EHDAA2:0001922;;EMAPA:17024;;EMAPA:18902;;MA:0001617;;SCTID:261623000;;VHOG:0000358
|is_a=UBERON:0004854;;UBERON:0009034
|synonym="mesentery of ventriculus" EXACT [OBOL:automatic];;"mesogaster" EXACT [http://medical-dictionary.thefreedictionary.com/mesogastrium];;"mesogastium" EXACT [MA:0001617];;"mesogastrium" EXACT [http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html];;"stomach mesentery" EXACT [Obol:obol];;"ventriculus mesentery" EXACT [OBOL:automatic]
|comment=todo - check primitive vs developed
|comment=todo - check primitive vs developed
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The portion of the primitive mesentery that encloses the stomach; from its dorsal sheet, the greater omentum develops, and from its ventral sheet, the lesser omentum." [http://medical-dictionary.thefreedictionary.com/mesogastrium]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003281
|is_a=UBERON:0004854 ;;UBERON:0009034
|is_obsolete=
|located_in=
|located_in=
|name=mesentery of stomach
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000945
|part_of=UBERON:0000945
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="mesentery of ventriculus" EXACT [OBOL:automatic];;"mesogaster" EXACT [http://medical-dictionary.thefreedictionary.com/mesogastrium];;"mesogastium" EXACT [MA:0001617];;"mesogastrium" EXACT [http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html];;"stomach mesentery" EXACT [Obol:obol];;"ventriculus mesentery" EXACT [OBOL:automatic]
|union_of=
|xref=EHDAA2:0001922;;EHDAA:2999;;EMAPA:17024;;EMAPA:18902;;MA:0001617;;SCTID:261623000;;VHOG:0000358
}}
}}

Latest revision as of 17:39, 12 September 2014

Name:mesentery of stomach
Namespace:FANTOM
Definition:"The portion of the primitive mesentery that encloses the stomach; from its dorsal sheet, the greater omentum develops, and from its ventral sheet, the lesser omentum." [1]
Xrefs:
links:

EHDAA2:0001922
EHDAA:2999
EMAPA:17024
EMAPA:18902
MA:0001617
SCTID:261623000

VHOG:0000358
Synonyms: "mesentery of ventriculus" EXACT [OBOL:automatic]
"mesogaster" EXACT [2]
"mesogastium" EXACT [MA:0001617]
"mesogastrium" EXACT [3]
"stomach mesentery" EXACT [Obol:obol]
"ventriculus mesentery" EXACT [OBOL:automatic]
Comments:todo - check primitive vs developed

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004854(gastrointestinal system mesentery),UBERON:0009034(stomach region)
part_of:UBERON:0000945(stomach)



Children

is a:UBERON:0005602 (dorsal mesogastrium)
part of:UBERON:0005602 (dorsal mesogastrium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003281 (mesentery of stomach), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.98e-131FFCP PHASE2:Hg19::chr8:47834174..47834213,+#_8afc97e2280aafe40061d0f76cab23a2p1@ENST00000524012
8.98e-131FFCP PHASE1:Hg19::chr11:56859608..56859619,-#_8afc97e2280aafe40061d0f76cab23a2p@chr11:56859608..56859619, -
8.98e-131FFCP PHASE1:Hg19::chr6:119812455..119812476,-#_8afc97e2280aafe40061d0f76cab23a2p1@uc003pyn.1
8.98e-131FFCP PHASE2:Hg19::chr7:22259740..22259751,-#_8afc97e2280aafe40061d0f76cab23a2p19@RAPGEF5
8.98e-131FFCP PHASE2:Hg19::chr21:28820954..28820963,-#_8afc97e2280aafe40061d0f76cab23a2p3@ENST00000420186, p3@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr7:22259740..22259751,-#_8afc97e2280aafe40061d0f76cab23a2p19@RAPGEF5
8.98e-131FFCP PHASE2:Hg19::chr11:56859603..56859606,-#_8afc97e2280aafe40061d0f76cab23a2p@chr11:56859603..56859606, -
8.98e-131FFCP PHASE2:Hg19::chr9:127269488..127269495,-#_8afc97e2280aafe40061d0f76cab23a2p5@NR5A1
8.98e-131FFCP PHASE1:Hg19::chr9:127269488..127269495,-#_8afc97e2280aafe40061d0f76cab23a2p5@NR5A1
8.98e-131FFCP PHASE2:Hg19::chr9:124516729..124516752,+#_8afc97e2280aafe40061d0f76cab23a2p@chr9:124516729..124516752, +
8.98e-131FFCP PHASE1:Hg19::chr9:124516729..124516752,+#_8afc97e2280aafe40061d0f76cab23a2p@chr9:124516729..124516752, +
8.98e-131FFCP PHASE2:Hg19::chr6:119812455..119812476,-#_8afc97e2280aafe40061d0f76cab23a2p1@uc003pyn.1
8.98e-131FFCP PHASE1:Hg19::chr1:28520450..28520453,-#_8afc97e2280aafe40061d0f76cab23a2p21@PTAFR
8.98e-131FFCP PHASE1:Hg19::chr8:22424709..22424716,-#_8afc97e2280aafe40061d0f76cab23a2p2@ENST00000517384
8.98e-131FFCP PHASE1:Hg19::chr1:157811772..157811796,-#_8afc97e2280aafe40061d0f76cab23a2p7@CD5L
8.98e-131FFCP PHASE1:Hg19::chr10:98014943..98014960,-#_8afc97e2280aafe40061d0f76cab23a2p@chr10:98014943..98014960, -
8.98e-131FFCP PHASE1:Hg19::chr16:84218794..84218800,+#_8afc97e2280aafe40061d0f76cab23a2p@chr16:84218794..84218800, +
8.98e-131FFCP PHASE1:Hg19::chr11:56859638..56859643,-#_8afc97e2280aafe40061d0f76cab23a2p@chr11:56859638..56859643, -
8.98e-131FFCP PHASE1:Hg19::chr21:28820892..28820899,-#_8afc97e2280aafe40061d0f76cab23a2p4@ENST00000420186, p4@uc002ymh.2
8.98e-131FFCP PHASE2:Hg19::chr10:98014908..98014919,-#_8afc97e2280aafe40061d0f76cab23a2p@chr10:98014908..98014919, -
8.98e-131FFCP PHASE2:Hg19::chr1:28520450..28520453,-#_8afc97e2280aafe40061d0f76cab23a2p21@PTAFR
8.98e-131FFCP PHASE1:Hg19::chr11:1891326..1891337,-#_8afc97e2280aafe40061d0f76cab23a2p@chr11:1891326..1891337, -
8.98e-131FFCP PHASE2:Hg19::chr11:56859608..56859619,-#_8afc97e2280aafe40061d0f76cab23a2p@chr11:56859608..56859619, -
8.98e-131FFCP PHASE1:Hg19::chr11:925449..925458,+#_8afc97e2280aafe40061d0f76cab23a2p17@AP2A2
8.98e-131FFCP PHASE2:Hg19::chr8:22424709..22424716,-#_8afc97e2280aafe40061d0f76cab23a2p2@ENST00000517384
8.98e-131FFCP PHASE2:Hg19::chr1:157811772..157811796,-#_8afc97e2280aafe40061d0f76cab23a2p7@CD5L
8.98e-131FFCP PHASE1:Hg19::chr19:32401253..32401271,-#_8afc97e2280aafe40061d0f76cab23a2p@chr19:32401253..32401271, -
8.98e-131FFCP PHASE2:Hg19::chr21:28820892..28820899,-#_8afc97e2280aafe40061d0f76cab23a2p4@ENST00000420186, p4@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr8:22424743..22424759,-#_8afc97e2280aafe40061d0f76cab23a2p1@ENST00000517384
8.98e-131FFCP PHASE1:Hg19::chrX:69645652..69645664,+#_8afc97e2280aafe40061d0f76cab23a2p7@GDPD2
8.98e-131FFCP PHASE2:Hg19::chr16:84218794..84218800,+#_8afc97e2280aafe40061d0f76cab23a2p@chr16:84218794..84218800, +
8.98e-131FFCP PHASE1:Hg19::chr11:56859693..56859701,-#_8afc97e2280aafe40061d0f76cab23a2p@chr11:56859693..56859701, -
8.98e-131FFCP PHASE2:Hg19::chr15:95561320..95561328,-#_8afc97e2280aafe40061d0f76cab23a2p@chr15:95561320..95561328, -
8.98e-131FFCP PHASE1:Hg19::chr21:28820911..28820933,-#_8afc97e2280aafe40061d0f76cab23a2p1@ENST00000420186, p1@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr17:78171885..78171900,+#_8afc97e2280aafe40061d0f76cab23a2p@chr17:78171885..78171900, +
8.98e-131FFCP PHASE2:Hg19::chr10:98014943..98014960,-#_8afc97e2280aafe40061d0f76cab23a2p@chr10:98014943..98014960, -
8.98e-131FFCP PHASE2:Hg19::chr11:56859638..56859643,-#_8afc97e2280aafe40061d0f76cab23a2p@chr11:56859638..56859643, -
8.98e-131FFCP PHASE2:Hg19::chr19:32401253..32401271,-#_8afc97e2280aafe40061d0f76cab23a2p@chr19:32401253..32401271, -
8.98e-131FFCP PHASE2:Hg19::chr8:22424743..22424759,-#_8afc97e2280aafe40061d0f76cab23a2p1@ENST00000517384
8.98e-131FFCP PHASE2:Hg19::chrX:69645652..69645664,+#_8afc97e2280aafe40061d0f76cab23a2p7@GDPD2
8.98e-131FFCP PHASE2:Hg19::chr11:1891326..1891337,-#_8afc97e2280aafe40061d0f76cab23a2p@chr11:1891326..1891337, -
8.98e-131FFCP PHASE1:Hg19::chr11:56859584..56859589,-#_8afc97e2280aafe40061d0f76cab23a2p@chr11:56859584..56859589, -
8.98e-131FFCP PHASE1:Hg19::chr9:79894790..79894797,+#_8afc97e2280aafe40061d0f76cab23a2p10@VPS13A
8.98e-131FFCP PHASE2:Hg19::chr11:925449..925458,+#_8afc97e2280aafe40061d0f76cab23a2p17@AP2A2
8.98e-131FFCP PHASE1:Hg19::chr4:76901930..76901942,+#_8afc97e2280aafe40061d0f76cab23a2p1@ENST00000501239
8.98e-131FFCP PHASE2:Hg19::chr21:28820911..28820933,-#_8afc97e2280aafe40061d0f76cab23a2p1@ENST00000420186, p1@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr8:22436248..22436259,+#_8afc97e2280aafe40061d0f76cab23a2p11@PDLIM2
8.98e-131FFCP PHASE1:Hg19::chr1:159172187..159172197,-#_8afc97e2280aafe40061d0f76cab23a2p1@uc001ftm.1
8.98e-131FFCP PHASE2:Hg19::chr9:127269434..127269438,-#_8afc97e2280aafe40061d0f76cab23a2p8@NR5A1
8.98e-131FFCP PHASE2:Hg19::chr14:75904485..75904519,+#_8afc97e2280aafe40061d0f76cab23a2p12@JDP2
8.98e-131FFCP PHASE1:Hg19::chr9:127269434..127269438,-#_8afc97e2280aafe40061d0f76cab23a2p8@NR5A1
8.98e-131FFCP PHASE2:Hg19::chr9:79894790..79894797,+#_8afc97e2280aafe40061d0f76cab23a2p10@VPS13A
8.98e-131FFCP PHASE1:Hg19::chr21:28820941..28820952,-#_8afc97e2280aafe40061d0f76cab23a2p2@ENST00000420186, p2@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr15:95561320..95561328,-#_8afc97e2280aafe40061d0f76cab23a2p@chr15:95561320..95561328, -
8.98e-131FFCP PHASE2:Hg19::chr4:76901930..76901942,+#_8afc97e2280aafe40061d0f76cab23a2p1@ENST00000501239
8.98e-131FFCP PHASE2:Hg19::chr11:56859693..56859701,-#_8afc97e2280aafe40061d0f76cab23a2p@chr11:56859693..56859701, -
8.98e-131FFCP PHASE2:Hg19::chr1:159172187..159172197,-#_8afc97e2280aafe40061d0f76cab23a2p1@uc001ftm.1
8.98e-131FFCP PHASE2:Hg19::chr9:127260615..127260651,-#_8afc97e2280aafe40061d0f76cab23a2p@chr9:127260615..127260651, -
8.98e-131FFCP PHASE2:Hg19::chr8:22436248..22436259,+#_8afc97e2280aafe40061d0f76cab23a2p11@PDLIM2
8.98e-131FFCP PHASE1:Hg19::chr9:127260615..127260651,-#_8afc97e2280aafe40061d0f76cab23a2p@chr9:127260615..127260651, -
8.98e-131FFCP PHASE1:Hg19::chr11:56859603..56859606,-#_8afc97e2280aafe40061d0f76cab23a2p@chr11:56859603..56859606, -
8.98e-131FFCP PHASE1:Hg19::chr6:152639579..152639586,-#_8afc97e2280aafe40061d0f76cab23a2p60@SYNE1
8.98e-131FFCP PHASE2:Hg19::chr9:133973310..133973321,+#_8afc97e2280aafe40061d0f76cab23a2p18@AIF1L
8.98e-131FFCP PHASE2:Hg19::chr21:28820941..28820952,-#_8afc97e2280aafe40061d0f76cab23a2p2@ENST00000420186, p2@uc002ymh.2
8.98e-131FFCP PHASE2:Hg19::chr17:78171885..78171900,+#_8afc97e2280aafe40061d0f76cab23a2p@chr17:78171885..78171900, +
8.98e-131FFCP PHASE1:Hg19::chr14:75904485..75904519,+#_8afc97e2280aafe40061d0f76cab23a2p12@JDP2
8.98e-131FFCP PHASE1:Hg19::chr9:133973310..133973321,+#_8afc97e2280aafe40061d0f76cab23a2p18@AIF1L
8.98e-131FFCP PHASE2:Hg19::chr11:56859584..56859589,-#_8afc97e2280aafe40061d0f76cab23a2p@chr11:56859584..56859589, -
8.98e-131FFCP PHASE2:Hg19::chr9:127269462..127269484,-#_8afc97e2280aafe40061d0f76cab23a2p2@NR5A1
8.98e-131FFCP PHASE1:Hg19::chr9:127269462..127269484,-#_8afc97e2280aafe40061d0f76cab23a2p2@NR5A1
8.98e-131FFCP PHASE1:Hg19::chr8:47834174..47834213,+#_8afc97e2280aafe40061d0f76cab23a2p1@ENST00000524012
8.98e-131FFCP PHASE1:Hg19::chr21:28820954..28820963,-#_8afc97e2280aafe40061d0f76cab23a2p3@ENST00000420186, p3@uc002ymh.2
8.98e-131FFCP PHASE2:Hg19::chr6:152639579..152639586,-#_8afc97e2280aafe40061d0f76cab23a2p60@SYNE1
8.98e-131FFCP PHASE1:Hg19::chr10:98014908..98014919,-#_8afc97e2280aafe40061d0f76cab23a2p@chr10:98014908..98014919, -
6.24e-88FFCP PHASE1:Hg19::chr22:36718586..36718593,-#_eab2bd556e3bdad22f0eba37fb09756dp@chr22:36718586..36718593, -
6.24e-88FFCP PHASE1:Hg19::chr4:146461014..146461025,+#_eab2bd556e3bdad22f0eba37fb09756dp@chr4:146461014..146461025, +
6.24e-88FFCP PHASE2:Hg19::chr22:36718586..36718593,-#_eab2bd556e3bdad22f0eba37fb09756dp@chr22:36718586..36718593, -
6.24e-88FFCP PHASE1:Hg19::chr3:130267501..130267516,+#_eab2bd556e3bdad22f0eba37fb09756dp@chr3:130267501..130267516, +
6.24e-88FFCP PHASE2:Hg19::chr9:127267367..127267383,+#_eab2bd556e3bdad22f0eba37fb09756dp@chr9:127267367..127267383, +
6.24e-88FFCP PHASE1:Hg19::chr9:127267367..127267383,+#_eab2bd556e3bdad22f0eba37fb09756dp@chr9:127267367..127267383, +
6.24e-88FFCP PHASE2:Hg19::chr4:146461014..146461025,+#_eab2bd556e3bdad22f0eba37fb09756dp@chr4:146461014..146461025, +
6.24e-88FFCP PHASE2:Hg19::chr3:130267501..130267516,+#_eab2bd556e3bdad22f0eba37fb09756dp@chr3:130267501..130267516, +
6.24e-88FFCP PHASE1:Hg19::chr1:21011608..21011618,-#_eab2bd556e3bdad22f0eba37fb09756dp15@KIF17
6.24e-88FFCP PHASE2:Hg19::chr1:21011608..21011618,-#_eab2bd556e3bdad22f0eba37fb09756dp15@KIF17
6.24e-88FFCP PHASE1:Hg19::chr11:56859722..56859732,-#_eab2bd556e3bdad22f0eba37fb09756dp@chr11:56859722..56859732, -
6.24e-88FFCP PHASE2:Hg19::chr19:32401274..32401289,-#_eab2bd556e3bdad22f0eba37fb09756dp@chr19:32401274..32401289, -
6.24e-88FFCP PHASE1:Hg19::chr19:32401274..32401289,-#_eab2bd556e3bdad22f0eba37fb09756dp@chr19:32401274..32401289, -
6.24e-88FFCP PHASE1:Hg19::chr21:40459334..40459341,+#_eab2bd556e3bdad22f0eba37fb09756dp@chr21:40459334..40459341, +
6.24e-88FFCP PHASE2:Hg19::chr21:40459334..40459341,+#_eab2bd556e3bdad22f0eba37fb09756dp@chr21:40459334..40459341, +
6.24e-88FFCP PHASE2:Hg19::chr11:56859722..56859732,-#_eab2bd556e3bdad22f0eba37fb09756dp@chr11:56859722..56859732, -
9.74e-88FFCP PHASE2:Hg19::chr14:24168655..24168686,+#_6f4fc3f5f927b5cf877c643d210493a7p@chr14:24168655..24168686, +
9.74e-88FFCP PHASE2:Hg19::chr7:151070957..151070988,+#_6f4fc3f5f927b5cf877c643d210493a7p@chr7:151070957..151070988, +
9.74e-88FFCP PHASE1:Hg19::chr12:72481040..72481051,+#_6f4fc3f5f927b5cf877c643d210493a7p19@TRHDE
9.74e-88FFCP PHASE1:Hg19::chr14:24168655..24168686,+#_6f4fc3f5f927b5cf877c643d210493a7p@chr14:24168655..24168686, +
9.74e-88FFCP PHASE2:Hg19::chr2:1508349..1508357,+#_6f4fc3f5f927b5cf877c643d210493a7p@chr2:1508349..1508357, +
9.74e-88FFCP PHASE1:Hg19::chr2:1508349..1508357,+#_6f4fc3f5f927b5cf877c643d210493a7p@chr2:1508349..1508357, +
9.74e-88FFCP PHASE1:Hg19::chr16:70680361..70680370,+#_6f4fc3f5f927b5cf877c643d210493a7p6@IL34
9.74e-88FFCP PHASE2:Hg19::chr16:70680361..70680370,+#_6f4fc3f5f927b5cf877c643d210493a7p6@IL34
9.74e-88FFCP PHASE2:Hg19::chr12:72481040..72481051,+#_6f4fc3f5f927b5cf877c643d210493a7p19@TRHDE
9.74e-88FFCP PHASE2:Hg19::chr2:128321491..128321509,+#_6f4fc3f5f927b5cf877c643d210493a7p@chr2:128321491..128321509, +

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