FF:11605-120I3: Difference between revisions

Latest revision as of 18:11, 4 June 2020

Name:	Cardiac Myocyte, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12350
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	heart
dev stage	NA
sex	NA
age	NA
cell type	cardiac muscle cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC6205
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004909

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12350		CAGE		DRX008199		DRR009071

Accession ID Hg19

Library id		BAM		CTSS
CNhs12350		DRZ000496		DRZ001881

Accession ID Hg38

Library id		BAM		CTSS
CNhs12350		DRZ011846		DRZ013231

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0934
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0363
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.223
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0584
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.219
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.141
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.223
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0818
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.00758
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.286
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0385
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.00628
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.0699
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.523
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.524
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.223
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.479
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.89
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12350

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.304
MA0003.1	MA0003.1	0.288
MA0004.1	MA0004.1	0.324
MA0006.1	MA0006.1	0.057
MA0007.1	MA0007.1	0.0965
MA0009.1	MA0009.1	0.568
MA0014.1	MA0014.1	0.828
MA0017.1	MA0017.1	0.224
MA0018.2	MA0018.2	1.46322e-5
MA0019.1	MA0019.1	0.495
MA0024.1	MA0024.1	0.0445
MA0025.1	MA0025.1	6.5233e-4
MA0027.1	MA0027.1	0.508
MA0028.1	MA0028.1	0.366
MA0029.1	MA0029.1	0.53
MA0030.1	MA0030.1	0.767
MA0031.1	MA0031.1	0.818
MA0035.2	MA0035.2	5.39776e-4
MA0038.1	MA0038.1	0.809
MA0039.2	MA0039.2	0.512
MA0040.1	MA0040.1	0.446
MA0041.1	MA0041.1	0.255
MA0042.1	MA0042.1	0.629
MA0043.1	MA0043.1	4.95109e-4
MA0046.1	MA0046.1	0.37
MA0047.2	MA0047.2	0.96
MA0048.1	MA0048.1	0.712
MA0050.1	MA0050.1	0.252
MA0051.1	MA0051.1	0.3
MA0052.1	MA0052.1	0.0351
MA0055.1	MA0055.1	0.535
MA0057.1	MA0057.1	0.429
MA0058.1	MA0058.1	0.063
MA0059.1	MA0059.1	0.768
MA0060.1	MA0060.1	0.286
MA0061.1	MA0061.1	0.698
MA0062.2	MA0062.2	1.72894e-4
MA0065.2	MA0065.2	0.062
MA0066.1	MA0066.1	0.0296
MA0067.1	MA0067.1	0.0369
MA0068.1	MA0068.1	0.292
MA0069.1	MA0069.1	0.713
MA0070.1	MA0070.1	0.422
MA0071.1	MA0071.1	0.349
MA0072.1	MA0072.1	0.785
MA0073.1	MA0073.1	0.917
MA0074.1	MA0074.1	0.181
MA0076.1	MA0076.1	0.0331
MA0077.1	MA0077.1	0.68
MA0078.1	MA0078.1	0.116
MA0079.2	MA0079.2	0.223
MA0080.2	MA0080.2	1.38207e-5
MA0081.1	MA0081.1	0.0333
MA0083.1	MA0083.1	0.00338
MA0084.1	MA0084.1	0.144
MA0087.1	MA0087.1	0.155
MA0088.1	MA0088.1	0.565
MA0090.1	MA0090.1	0.0119
MA0091.1	MA0091.1	0.142
MA0092.1	MA0092.1	0.291
MA0093.1	MA0093.1	0.258
MA0099.2	MA0099.2	0.0733
MA0100.1	MA0100.1	0.216
MA0101.1	MA0101.1	0.51
MA0102.2	MA0102.2	0.787
MA0103.1	MA0103.1	0.00422
MA0104.2	MA0104.2	0.331
MA0105.1	MA0105.1	0.0641
MA0106.1	MA0106.1	0.389
MA0107.1	MA0107.1	0.329
MA0108.2	MA0108.2	0.00278
MA0111.1	MA0111.1	0.985
MA0112.2	MA0112.2	0.00251
MA0113.1	MA0113.1	0.0235
MA0114.1	MA0114.1	0.383
MA0115.1	MA0115.1	0.582
MA0116.1	MA0116.1	0.0268
MA0117.1	MA0117.1	0.521
MA0119.1	MA0119.1	0.237
MA0122.1	MA0122.1	0.8
MA0124.1	MA0124.1	0.885
MA0125.1	MA0125.1	0.811
MA0131.1	MA0131.1	0.0568
MA0135.1	MA0135.1	0.139
MA0136.1	MA0136.1	1.31225e-7
MA0137.2	MA0137.2	0.00717
MA0138.2	MA0138.2	0.419
MA0139.1	MA0139.1	0.547
MA0140.1	MA0140.1	0.014
MA0141.1	MA0141.1	0.0312
MA0142.1	MA0142.1	0.775
MA0143.1	MA0143.1	0.655
MA0144.1	MA0144.1	0.015
MA0145.1	MA0145.1	0.241
MA0146.1	MA0146.1	0.276
MA0147.1	MA0147.1	0.377
MA0148.1	MA0148.1	0.682
MA0149.1	MA0149.1	0.555
MA0150.1	MA0150.1	0.151
MA0152.1	MA0152.1	0.0223
MA0153.1	MA0153.1	0.918
MA0154.1	MA0154.1	0.0506
MA0155.1	MA0155.1	0.137
MA0156.1	MA0156.1	4.04058e-4
MA0157.1	MA0157.1	0.971
MA0159.1	MA0159.1	0.00684
MA0160.1	MA0160.1	0.407
MA0162.1	MA0162.1	0.194
MA0163.1	MA0163.1	0.00505
MA0164.1	MA0164.1	0.279
MA0258.1	MA0258.1	0.0709
MA0259.1	MA0259.1	0.292

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12350

Novel motif	Logo	P-value
1	1	0.4
10	10	0.862
100	100	0.748
101	101	0.604
102	102	0.175
103	103	0.162
104	104	0.264
105	105	0.811
106	106	0.0359
107	107	0.00472
108	108	0.316
109	109	0.778
11	11	0.127
110	110	0.1
111	111	0.0841
112	112	0.446
113	113	0.0873
114	114	0.603
115	115	0.312
116	116	0.0526
117	117	0.334
118	118	0.794
119	119	0.941
12	12	0.297
120	120	0.0828
121	121	0.182
122	122	0.369
123	123	0.00414
124	124	0.375
125	125	0.83
126	126	0.443
127	127	0.14
128	128	0.00932
129	129	0.919
13	13	0.799
130	130	0.118
131	131	0.795
132	132	0.317
133	133	0.383
134	134	0.381
135	135	0.434
136	136	0.49
137	137	0.481
138	138	0.748
139	139	0.538
14	14	0.678
140	140	0.879
141	141	0.39
142	142	0.309
143	143	0.364
144	144	0.124
145	145	0.283
146	146	0.105
147	147	0.242
148	148	0.496
149	149	0.0752
15	15	0.494
150	150	0.217
151	151	0.485
152	152	0.185
153	153	0.846
154	154	0.389
155	155	0.0343
156	156	0.58
157	157	0.699
158	158	0.00543
159	159	0.152
16	16	0.0782
160	160	0.0626
161	161	0.881
162	162	0.311
163	163	0.844
164	164	0.375
165	165	0.996
166	166	0.105
167	167	0.197
168	168	0.644
169	169	0.0582
17	17	0.845
18	18	0.281
19	19	0.0474
2	2	0.212
20	20	0.331
21	21	0.393
22	22	0.18
23	23	0.166
24	24	0.531
25	25	0.617
26	26	0.111
27	27	0.407
28	28	0.359
29	29	0.254
3	3	0.276
30	30	0.326
31	31	0.864
32	32	1.28563e-10
33	33	0.33
34	34	0.116
35	35	0.499
36	36	0.872
37	37	0.2
38	38	0.76
39	39	0.0352
4	4	0.163
40	40	0.893
41	41	0.605
42	42	0.702
43	43	0.166
44	44	0.0451
45	45	0.392
46	46	0.137
47	47	0.649
48	48	0.377
49	49	0.38
5	5	0.342
50	50	0.336
51	51	0.486
52	52	0.433
53	53	0.382
54	54	0.915
55	55	0.843
56	56	0.875
57	57	0.682
58	58	0.992
59	59	0.0415
6	6	0.855
60	60	0.766
61	61	0.591
62	62	0.364
63	63	0.379
64	64	0.444
65	65	0.167
66	66	0.739
67	67	0.905
68	68	0.93
69	69	0.298
7	7	0.898
70	70	0.491
71	71	0.0649
72	72	0.6
73	73	0.12
74	74	0.257
75	75	0.501
76	76	0.561
77	77	0.127
78	78	0.911
79	79	0.117
8	8	0.0369
80	80	0.718
81	81	0.671
82	82	0.295
83	83	0.43
84	84	0.72
85	85	0.00899
86	86	0.758
87	87	0.0259
88	88	0.536
89	89	0.144
9	9	0.224
90	90	0.976
91	91	0.457
92	92	0.477
93	93	0.306
94	94	0.59
95	95	0.413
96	96	0.744
97	97	0.822
98	98	0.362
99	99	0.00408

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12350

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000118 human cardiac myocyte sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000737 (striated muscle cell)
0000746 (cardiac muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000118 (human cardiac myocyte sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000513 (cardiac muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0007100,UBERON:0001134,UBERON:0000948,UBERON:0002100,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0003103,UBERON:0005291,UBERON:0002036,UBERON:0002385,UBERON:0000486,UBERON:0003104,UBERON:0000914,UBERON:0005256,UBERON:0001048,UBERON:0006598,UBERON:0001015,UBERON:0002532,UBERON:0002329,UBERON:0002204,UBERON:0004535,UBERON:0000383,UBERON:0005498,UBERON:0003077,UBERON:0004290,UBERON:0009142,UBERON:0003081,UBERON:0001009,UBERON:0004140,UBERON:0009881,UBERON:0006603,UBERON:0004141,UBERON:0003082,UBERON:0004872,UBERON:0003084,UBERON:0003059,UBERON:0007282,UBERON:0009618,UBERON:0007285,UBERON:0007005,UBERON:0004139,UBERON:0004291
+|DRA_sample_Accession=CAGE@SAMD00004909
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0000680,CL:0002321,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000220,CL:0000004,CL:0000211,CL:0000056,CL:0000255,CL:0002494,CL:0000737,CL:0000222,CL:0000746,CL:0000355,CL:0000513
+|accession_numbers=CAGE;DRX008199;DRR009071;DRZ000496;DRZ001881;DRZ011846;DRZ013231
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0002494,CL:0000737,CL:0000746
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000118
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.31!203.22!TCF21;;chr8:11561684..11561751,+!p1@GATA4!1.85!69.08!GATA4;;chr7:35293685..35293718,-!p1@TBX20!1.71!50.30!TBX20;;chr6:85474299..85474324,-!p1@TBX18!1.68!81.15!TBX18;;chr17:1959369..1959388,+!p2@HIC1!1.66!114.02!HIC1;;chr4:174451370..174451387,-!p1@HAND2!1.66!44.94!HAND2;;chr11:61520075..61520136,+!p1@C11orf9!1.44!55.67!C11orf9;;chr18:19749386..19749404,+!p2@GATA6!1.42!36.22!GATA6;;chr11:32457075..32457095,-!p1@WT1!1.28!18.11!WT1;;chr8:55370487..55370503,+!p1@SOX17!1.27!17.44!SOX17;;chr18:19749541..19749557,+!p1@GATA6!1.26!53.66!GATA6;;chr7:19157248..19157268,-!p1@TWIST1!1.25!45.61!TWIST1;;chr15:67430351..67430366,+!p10@SMAD3!1.22!15.43!SMAD3;;chr2:19558373..19558392,-!p1@OSR1!1.21!41.58!OSR1;;chr17:70117153..70117174,+!p1@SOX9!1.16!138.16!SOX9;;chr15:57511609..57511651,+!p2@TCF12!1.16!22.80!TCF12;;chr11:47279504..47279563,+!p1@NR1H3!1.15!29.51!NR1H3;;chr17:1958388..1958404,+!p1@HIC1!1.12!77.80!HIC1;;chr6:19837592..19837621,+!p1@ID4!1.07!66.40!ID4;;chr20:30193083..30193098,+!p1@ID1!1.06!847.10!ID1;;chr3:141087393..141087426,+!p3@ZBTB38!1.05!41.58!ZBTB38;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.04!10.06!PEG3;;chr6:126240380..126240430,+!p2@NCOA7!1.01!24.15!NCOA7;;chr3:25469724..25469773,+!p1@RARB!0.99!12.74!RARB;;chr8:10588010..10588030,-!p1@SOX7!0.99!8.72!SOX7;;chr16:85932760..85932775,+!p1@IRF8!0.99!8.72!IRF8;;chr10:64576105..64576133,-!p1@EGR2!0.98!18.11!EGR2;;chr5:92918919..92918942,+!p1@NR2F1!0.95!36.89!NR2F1;;chr9:73029219..73029289,-!p2@KLF9!0.94!24.15!KLF9;;chr6:85473156..85473210,-!p2@TBX18!0.94!9.39!TBX18;;chr1:164528410..164528428,+!p1@PBX1!0.93!58.35!PBX1;;chr20:48599506..48599526,+!p1@SNAI1!0.93!49.63!SNAI1;;chr14:62162285..62162296,+!p3@HIF1A!0.93!40.91!HIF1A;;chr20:62680984..62680999,-!p1@SOX18!0.93!10.06!SOX18;;chr21:39870339..39870443,-!p1@ERG!0.92!7.38!ERG;;chr8:48650715..48650735,-!p1@CEBPD!0.91!943.01!CEBPD;;chr14:62162258..62162269,+!p2@HIF1A!0.91!71.09!HIF1A;;chr1:158969752..158969780,+!p6@IFI16!0.91!12.74!IFI16;;chr18:19749517..19749531,+!p3@GATA6!0.90!12.74!GATA6;;chr18:19749353..19749367,+!p4@GATA6!0.89!6.71!GATA6;;chr1:158975744..158975769,+!p10@IFI16!0.89!6.71!IFI16;;chr1:164528942..164528964,+!p11@PBX1!0.89!6.71!PBX1;;chr1:40105299..40105326,-!p1@HEYL!0.89!6.71!HEYL;;chr4:174450089..174450153,-!p2@HAND2!0.89!6.71!HAND2;;chr10:131762504..131762555,-!p1@EBF3!0.89!6.71!EBF3;;chr20:50179368..50179392,-!p2@NFATC2!0.88!8.72!NFATC2;;chr1:164528384..164528409,+!p3@PBX1!0.87!20.79!PBX1;;chr1:23885981..23886002,-!p1@ID3!0.86!1168.36!ID3;;chr1:170633348..170633399,+!p2@PRRX1!0.86!8.72!PRRX1;;chr19:46801639..46801699,+!p1@HIF3A!0.85!6.04!HIF3A;;chr3:25469815..25469866,+!p3@RARB!0.85!6.04!RARB;;chrY:21906594..21906622,-!p1@KDM5D!0.85!6.04!KDM5D;;chr11:46299199..46299233,+!p1@CREB3L1!0.84!32.86!CREB3L1;;chr1:23696348..23696363,-!p4@ZNF436!0.84!6.71!ZNF436;;chr16:8962202..8962222,-!p3@CARHSP1!0.83!10.73!CARHSP1;;chr5:92918894..92918912,+!p2@NR2F1!0.82!19.45!NR2F1;;chr1:164528911..164528940,+!p7@PBX1!0.82!8.72!PBX1;;chr19:45260775..45260838,+!p5@BCL3!0.82!7.38!BCL3;;chr7:149470540..149470596,-!p2@ZNF467!0.81!7.38!ZNF467;;chr16:88519743..88519754,+!p2@ZFPM1!0.81!6.04!ZFPM1;;chr18:53068911..53068935,-!p4@TCF4!0.80!6.04!TCF4;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.80!5.37!SEBOX;;chr20:61051039..61051057,-!p1@GATA5!0.80!5.37!GATA5;;chr11:32457413..32457431,-!p2@WT1!0.80!5.37!WT1;;chr3:25470156..25470227,+!p2@RARB!0.80!5.37!RARB;;chr15:67418047..67418093,+!p4@SMAD3!0.79!6.71!SMAD3;;chr8:49833948..49833973,-!p2@SNAI2!0.77!34.21!SNAI2;;chr19:13134772..13134822,+!p2@NFIX!0.77!7.38!NFIX;;chr14:62162224..62162254,+!p1@HIF1A!0.76!762.59!HIF1A;;chr8:49833978..49833996,-!p1@SNAI2!0.76!109.32!SNAI2;;chr1:23696308..23696339,-!p2@ZNF436!0.76!10.73!ZNF436;;chr2:85980951..85981004,+!p1@ATOH8!0.76!8.05!ATOH8;;chrX:131545273..131545287,-!p17@MBNL3!0.76!4.69!MBNL3;;chr6:85473227..85473243,-!p5@TBX18!0.76!4.69!TBX18;;chr8:11561453..11561466,+!p2@GATA4!0.76!4.69!GATA4;;chr15:67430381..67430396,+!p21@SMAD3!0.76!4.69!SMAD3;;chr19:13213399..13213414,-!p6@LYL1!0.76!4.69!LYL1;;chr1:170632285..170632309,+!p1@PRRX1!0.75!5.37!PRRX1;;chr14:62203749..62203798,+!p5@HIF1A!0.74!7.38!HIF1A;;chr2:66662281..66662308,+!p1@MEIS1!0.73!16.77!MEIS1;;chr3:157823517..157823562,-!p1@SHOX2!0.73!4.69!SHOX2;;chr1:23696448..23696453,-!p5@ZNF436!0.72!5.37!ZNF436;;chr1:170632959..170632987,+!p4@PRRX1!0.72!4.69!PRRX1;;chr5:92918956..92918969,+!p4@NR2F1!0.72!4.69!NR2F1;;chr5:92919375..92919438,+!p6@NR2F1!0.72!4.69!NR2F1;;chr10:51572408..51572454,+!p3@NCOA4!0.71!26.83!NCOA4;;chr7:19157043..19157088,-!p2@TWIST1!0.71!11.40!TWIST1;;chr19:45971246..45971265,+!p1@FOSB!0.70!85.85!FOSB;;chr17:38498402..38498445,+!p3@RARA!0.70!16.10!RARA;;chr6:45296048..45296082,+!p1@RUNX2!0.70!4.69!RUNX2;;chr6:85474198..85474212,-!p3@TBX18!0.70!4.02!TBX18;;chr7:27170359..27170381,-!p1@HOXA4!0.70!4.02!HOXA4;;chr1:170632250..170632277,+!p7@PRRX1!0.70!4.02!PRRX1;;chr20:590944..590960,-!p1@TCF15!0.70!4.02!TCF15;;chr11:125034605..125034636,+!p2@PKNOX2!0.70!4.02!PKNOX2;;chr2:85981027..85981047,+!p8@ATOH8!0.70!4.02!ATOH8;;chr15:67418177..67418204,+!p9@SMAD3!0.70!4.02!SMAD3;;chr17:6926362..6926377,+!p1@BCL6B!0.70!4.02!BCL6B;;chr10:22292591..22292606,-!p2@DNAJC1!0.69!6.71!DNAJC1;;chr12:57504975..57505019,-!p2@STAT6!0.68!17.44!STAT6;;chr17:41622925..41622976,-!p3@ETV4!0.68!6.04!ETV4;;chr14:62203595..62203676,+!p4@HIF1A!0.67!7.38!HIF1A;;chr3:126076242..126076257,-!p1@KLF15!0.67!4.69!KLF15;;chr3:141087339..141087387,+!p2@ZBTB38!0.66!42.92!ZBTB38;;chr15:37392724..37392757,-!p1@MEIS2!0.66!18.78!MEIS2;;chr17:38498594..38498661,+!p2@RARA!0.66!13.41!RARA;;chr1:164528616..164528660,+!p5@PBX1!0.66!8.05!PBX1;;chr14:62213827..62213853,+!p6@HIF1A!0.66!5.37!HIF1A;;chr8:116681108..116681120,-!p9@TRPS1!0.66!4.69!TRPS1;;chr5:92918860..92918871,+!p10@NR2F1!0.66!4.02!NR2F1;;chr15:67418119..67418162,+!p5@SMAD3!0.66!4.02!SMAD3;;chr16:8962853..8962878,-!p1@CARHSP1!0.65!239.44!CARHSP1;;chr2:239756671..239756732,+!p1@TWIST2!0.65!12.74!TWIST2;;chr12:66218212..66218244,+!p5@HMGA2!0.65!5.37!HMGA2;;chr3:128206762..128206781,-!p2@GATA2!0.64!24.15!GATA2;;chr21:47063625..47063658,+!p1@PCBP3!0.64!16.77!PCBP3;;chr10:35484804..35484902,+!p2@CREM!0.64!14.76!CREM;;chr1:164528445..164528459,+!p2@PBX1!0.64!12.07!PBX1;;chr8:22550982..22550999,-!p1@EGR3!0.64!10.73!EGR3;;chr1:170632115..170632136,+!p9@PRRX1!0.64!3.35!PRRX1;;chr15:37386163..37386175,-!p52@MEIS2!0.64!3.35!MEIS2;;chr4:174451350..174451363,-!p3@HAND2!0.64!3.35!HAND2;;chr11:32456954..32456965,-!p4@WT1!0.64!3.35!WT1;;chr9:132427883..132427951,+!p2@PRRX2!0.64!3.35!PRRX2;;chr16:88519669..88519726,+!p1@ZFPM1!0.62!33.54!ZFPM1;;chr8:72756667..72756736,-!p2@MSC!0.62!5.37!MSC;;chr11:128563948..128564003,+!p1@FLI1!0.61!44.27!FLI1;;chr8:48650982..48651023,-!p3@CEBPD!0.61!8.72!CEBPD;;chr19:35455110..35455149,-!p1@ZNF792!0.61!6.71!ZNF792;;chr19:58987786..58987805,+!p3@ZNF446!0.61!4.69!ZNF446;;chr6:21593973..21593988,+!p1@SOX4!0.60!131.46!SOX4;;chr8:72756267..72756296,-!p4@MSC!0.60!4.69!MSC;;chr14:62213758..62213774,+!p8@HIF1A!0.60!4.02!HIF1A;;chr14:75745523..75745537,+!p1@FOS!0.59!430.59!FOS;;chr19:45251943..45252006,+!p1@BCL3!0.59!93.23!BCL3;;chr7:149470641..149470694,-!p1@ZNF467!0.59!15.43!ZNF467;;chr12:104532004..104532033,-!p4@NFYB!0.59!9.39!NFYB;;chr10:51572339..51572376,+!p4@NCOA4!0.59!7.38!NCOA4;;chr2:145282041..145282092,-!p8@ZEB2!0.59!4.69!ZEB2;;chr8:72756637..72756664,-!p3@MSC!0.59!3.35!MSC;;chr11:47279248..47279264,+!p3@NR1H3!0.59!3.35!NR1H3;;chr9:14083467..14083483,-!p4@NFIB!0.58!8.05!NFIB;;chr8:116681123..116681143,-!p4@TRPS1!0.58!6.04!TRPS1;;chr2:28618532..28618610,+!p4@FOSL2!0.58!5.37!FOSL2;;chr17:46622114..46622138,-!p4@HOXB2!0.58!4.69!HOXB2;;chr12:53614115..53614154,-!p1@RARG!0.57!17.44!RARG;;chr20:42543441..42543497,+!p1@TOX2!0.57!14.76!TOX2;;chr19:13134457..13134462,+!p5@NFIX!0.57!5.37!NFIX;;chr7:100076723..100076737,-!p3@TSC22D4!0.57!4.69!TSC22D4;;chr17:46621279..46621297,-!p13@HOXB2!0.57!2.68!HOXB2;;chr2:85980768..85980783,+!p10@ATOH8!0.57!2.68!ATOH8;;chr19:47523058..47523114,+!p1@NPAS1!0.57!2.68!NPAS1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.57!2.68!ZSCAN1;;chr1:217262933..217262968,-!p3@ESRRG!0.57!2.68!ESRRG;;chr1:44513995..44514031,+!p1@KLF17!0.57!2.68!KLF17;;chr13:37494275..37494304,-!p2@SMAD9!0.57!2.68!SMAD9;;chr14:62214151..62214164,+!p11@HIF1A!0.57!2.68!HIF1A;;chr9:16705069..16705086,-!p3@BNC2!0.57!2.68!BNC2;;chr12:66218598..66218645,+!p2@HMGA2!0.56!14.76!HMGA2;;chr20:42543506..42543549,+!p2@TOX2!0.56!7.38!TOX2;;chr1:61924375..61924380,+!p6@NFIA!0.56!4.02!NFIA;;chr4:146436110..146436135,+!p6@SMAD1!0.56!4.02!SMAD1;;chr9:73028814..73028895,-!p1@KLF9!0.55!31.52!KLF9;;chr19:46272462..46272562,-!p1@SIX5!0.55!12.74!SIX5;;chr18:56532100..56532130,+!p1@ZNF532!0.55!5.37!ZNF532;;chr9:14082760..14082775,-!p6@NFIB!0.55!4.69!NFIB;;chr3:168864315..168864339,-!p2@MECOM!0.55!4.69!MECOM;;chr20:6748325..6748352,+!p1@BMP2!0.55!4.02!BMP2;;chr15:37392094..37392116,-!p6@MEIS2!0.55!3.35!MEIS2;;chr6:144329384..144329405,-!p1@PLAGL1!0.54!36.22!PLAGL1;;chr12:66218183..66218209,+!p4@HMGA2!0.54!5.37!HMGA2;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.54!4.69!MEIS3P1;;chr2:166326200..166326216,+!p1@CSRNP3!0.54!4.02!CSRNP3;;chr6:21597431..21597447,+!p8@SOX4!0.54!3.35!SOX4;;chr5:176738887..176738934,-!p1@MXD3!0.53!20.12!MXD3;;chr12:3069037..3069119,+!p2@TEAD4!0.53!10.06!TEAD4;;chr14:24837368..24837401,+!p1@NFATC4!0.53!6.71!NFATC4;;chr3:168865194..168865245,-!p3@MECOM!0.53!3.35!MECOM;;chr15:37392534..37392562,-!p10@MEIS2!0.53!2.68!MEIS2;;chr19:13213511..13213545,-!p2@LYL1!0.53!2.68!LYL1;;chr12:66218836..66218888,+!p1@HMGA2!0.52!27.50!HMGA2;;chr4:146402795..146402816,+!p7@SMAD1!0.52!3.35!SMAD1;;chr1:23886132..23886156,-!p2@ID3!0.52!2.68!ID3;;chr12:104531945..104531996,-!p1@NFYB!0.51!40.24!NFYB;;chr19:49865646..49865718,-!p1@TEAD2!0.51!24.82!TEAD2;;chr19:46272106..46272115,-!p3@SIX5!0.51!7.38!SIX5;;chr5:158526917..158526932,-!p1@EBF1!0.51!6.71!EBF1;;chr3:12329397..12329433,+!p2@PPAR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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000513;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000737;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100
+|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000513
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor2.CNhs12350.11605-120I3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor2.CNhs12350.11605-120I3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor2.CNhs12350.11605-120I3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor2.CNhs12350.11605-120I3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor2.CNhs12350.11605-120I3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11605-120I3
-|is_a=EFO:0002091;;FF:0000002;;FF:0000118;;FF:0000210
+|is_a=EFO:0002091;;FF:0000118
+|is_obsolete=
+|library_id=CNhs12350
+|library_id_phase_based=2:CNhs12350
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11605
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11605
 |name=Cardiac Myocyte, donor2
 |namespace=FANTOM5
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12350,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=120
 |rna_catalog_number=SC6205
@@ Line 57: / Line 79: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 77: / Line 100: @@
 |sample_tissue=heart
 |top_motifs=RXR{A,B,G}:2.23493134038;IKZF1:1.78430268538;GLI1..3:1.546699879;RXRA_VDR{dimer}:1.44698037016;NR1H4:1.36844524021;NR6A1:1.32922538232;HOX{A5,B5}:1.29585919961;TFAP4:1.12565044916;ZNF238:1.0483507953;EN1,2:1.04234675105;SMAD1..7,9:1.02637338162;NKX2-1,4:0.995234650863;AR:0.986181507388;UFEwm:0.973222684154;CRX:0.955894571712;EBF1:0.861792831391;CDC5L:0.851733036196;FOXP3:0.81820245924;TLX1..3_NFIC{dimer}:0.815445070353;GTF2A1,2:0.813917818847;MYBL2:0.807637186923;NKX2-2,8:0.766233273467;EVI1:0.754432004036;STAT5{A,B}:0.751840863959;TEF:0.73703563523;XBP1:0.723471604062;LHX3,4:0.702493460893;NANOG{mouse}:0.697481218055;NKX3-1:0.691864403864;PAX5:0.655859855701;SOX17:0.607084989418;SRF:0.601199251603;ZIC1..3:0.583298312945;TFCP2:0.5720629131;ALX4:0.554843320664;KLF4:0.549442833866;GZF1:0.547175856982;STAT2,4,6:0.543859560819;HSF1,2:0.542436842939;GFI1B:0.537750860166;NFATC1..3:0.527817800367;NR3C1:0.511225294162;ESR1:0.486432374052;PBX1:0.479643948527;TEAD1:0.463782263796;DBP:0.45015395973;PATZ1:0.449831488376;NR5A1,2:0.440266739956;ESRRA:0.438311109028;GFI1:0.435033943917;GATA6:0.431884911527;GTF2I:0.424618548612;ONECUT1,2:0.415547984111;ATF6:0.401183720092;TBP:0.389410668228;PAX8:0.373221871668;FOXD3:0.36668128164;HOX{A4,D4}:0.354391215476;T:0.315312390524;TAL1_TCF{3,4,12}:0.310235133746;NFE2L2:0.301665046208;FOXO1,3,4:0.30044617254;SOX2:0.300245977954;ZNF423:0.292219016057;STAT1,3:0.245250501161;HNF4A_NR2F1,2:0.23893557884;SPZ1:0.23869434954;XCPE1{core}:0.237223285666;ZNF148:0.221072161065;VSX1,2:0.21432027547;SOX5:0.195238810769;MAZ:0.186522380675;PAX1,9:0.168567237161;ZNF384:0.160971947893;NKX6-1,2:0.152172567319;ZBTB6:0.125689029806;SOX{8,9,10}:0.0951876782167;LEF1_TCF7_TCF7L1,2:0.0925985098532;TOPORS:0.0807262596398;TP53:0.077922413605;CEBPA,B_DDIT3:0.0664215043111;RFX1:0.0486146873881;HAND1,2:0.0429365361361;HNF1A:0.0393360518777;FOX{F1,F2,J1}:0.0379282260488;RBPJ:0.0377853402725;REST:0.0376897211125;CDX1,2,4:-0.0080621461319;GATA4:-0.0143314839131;NFE2:-0.0200380479424;HIC1:-0.0259020273169;MAFB:-0.0281802184261;ARID5B:-0.0398558922284;POU2F1..3:-0.0405263248855;NFIX:-0.0450562519949;MYFfamily:-0.0672760474916;NHLH1,2:-0.067828086099;AIRE:-0.0725948488768;HOXA9_MEIS1:-0.0764922838191;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0769577848966;HES1:-0.0899458534545;MZF1:-0.0991995573888;HBP1_HMGB_SSRP1_UBTF:-0.107750715205;E2F1..5:-0.12370907083;HLF:-0.125157518846;FOXA2:-0.125299775218;TLX2:-0.125613534324;FOXM1:-0.13696748048;PRRX1,2:-0.142537813872;EGR1..3:-0.143647378077;HMGA1,2:-0.162186656797;ZNF143:-0.162627164565;NFE2L1:-0.168822528407;NFY{A,B,C}:-0.170703362352;PRDM1:-0.176941032864;SP1:-0.18373885534;MEF2{A,B,C,D}:-0.184561260375;DMAP1_NCOR{1,2}_SMARC:-0.188377784155;ETS1,2:-0.191180992152;NFKB1_REL_RELA:-0.193326395853;BACH2:-0.195106304226;TFAP2{A,C}:-0.202474782264;NANOG:-0.208649149794;SPIB:-0.221364902214;NKX3-2:-0.224192540949;PAX3,7:-0.224463300627;ZBTB16:-0.225619809705;FOXQ1:-0.225970572183;YY1:-0.227605793477;AHR_ARNT_ARNT2:-0.246998772247;IRF7:-0.248873424517;TFDP1:-0.257258525129;FOS_FOS{B,L1}_JUN{B,D}:-0.266203200528;IRF1,2:-0.278123072761;PPARG:-0.278310646576;POU5F1:-0.279282269017;bHLH_family:-0.28128240167;EP300:-0.288202930491;POU3F1..4:-0.299762718069;ALX1:-0.303057795192;RREB1:-0.31014743959;RUNX1..3:-0.311729063101;ELK1,4_GABP{A,B1}:-0.316239416148;FOX{I1,J2}:-0.331639132265;FOSL2:-0.343173587809;SPI1:-0.35489296889;MTE{core}:-0.357868970906;MED-1{core}:-0.359895372758;ZFP161:-0.37550060836;FOX{D1,D2}:-0.383589222806;POU6F1:-0.418035999519;ELF1,2,4:-0.421774745877;HIF1A:-0.44226701421;JUN:-0.447254925423;MTF1:-0.457293229197;HMX1:-0.464142667604;BPTF:-0.475633226058;PAX6:-0.505364173553;PAX2:-0.533588474154;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.543477210043;TBX4,5:-0.549894244743;POU1F1:-0.577742688991;NFIL3:-0.583678227305;ATF4:-0.589396133952;TFAP2B:-0.591362556521;IKZF2:-0.597671205102;FOXL1:-0.61091274257;CUX2:-0.622693779831;RORA:-0.623111467775;ATF5_CREB3:-0.629692855571;NKX2-3_NKX2-5:-0.644870336055;NRF1:-0.648355543864;GCM1,2:-0.667330925474;MYB:-0.667593403051;BREu{core}:-0.66788831609;TGIF1:-0.738490909864;SREBF1,2:-0.756306352374;FOXP1:-0.759940504655;PAX4:-0.764316619552;OCT4_SOX2{dimer}:-0.766183665847;ZEB1:-0.798865667946;RFX2..5_RFXANK_RFXAP:-0.821984811836;SNAI1..3:-0.847988063031;CREB1:-0.864106493799;LMO2:-0.888083286487;ADNP_IRX_SIX_ZHX:-0.925754271195;ATF2:-1.00576950853;FOXN1:-1.08285956845;MYOD1:-1.1569258687;PITX1..3:-1.21762779031;PDX1:-1.30409188932;HOX{A6,A7,B6,B7}:-2.24404779627
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11605-120I3;search_select_hide=table117:FF:11605-120I3
 }}

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FF:11605-120I3: Difference between revisions

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Latest revision as of 18:11, 4 June 2020

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