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{{CL
{{CL
|id=CL:0002432
|alt_id=
|name=CD24-positive, CD4 single-positive thymocyte
|namespace=cell;;efo
|def="A CD4-positive, CD8-negative thymocyte that is CD24-positive and expresses high levels of the alpha-beta T cell receptor." [GOC:tfm, http://www.immgen.org/index_content.html]
|xref=
|is_a=CL:0000810
|synonym="CD24-positive, CD4 single-positive semimature thymocyte" EXACT [];;"T.4SP24int.Th" EXACT []
|comment=Described in the immgene database as being CD24-intermediate.
|comment=Described in the immgene database as being CD24-intermediate.
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-10-21T02:43:52Z
|def="A CD4-positive, CD8-negative thymocyte that is CD24-positive and expresses high levels of the alpha-beta T cell receptor." [GOC:tfm, http://www.immgen.org/index_content.html]
|subset=
|derives_from=
|derives_from=
|develops_from=CL:0002433
|develops_from=CL:0002433
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002432
|is_a=CL:0000810
|is_obsolete=
|located_in=
|located_in=
|name=CD24-positive, CD4 single-positive thymocyte
|namespace=FANTOM
|obo_creation_date=2010-10-21T02:43:52Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="CD24-positive, CD4 single-positive semimature thymocyte" EXACT [];;"T.4SP24int.Th" EXACT []
|union_of=
|xref=
}}
}}

Latest revision as of 16:43, 12 September 2014

Name:CD24-positive, CD4 single-positive thymocyte
Namespace:FANTOM
Definition:"A CD4-positive, CD8-negative thymocyte that is CD24-positive and expresses high levels of the alpha-beta T cell receptor." [GOC:tfm, http://www.immgen.org/index_content.html]
Synonyms: "CD24-positive, CD4 single-positive semimature thymocyte" EXACT []
"T.4SP24int.Th" EXACT []
Comments:Described in the immgene database as being CD24-intermediate.
Created by:tmeehan
Creation date:2010-10-21T02:43:52Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000810(CD4-positive, alpha-beta thymocyte)
develops_from:CL:0002433(CD69-positive, CD4-positive single-positive thymocyte)



Children


develops from:CL:0002436 (mature CD4 single-positive thymocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002432 (CD24-positive, CD4 single-positive thymocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.55e-98FFCP PHASE2:Hg19::chr1:183622379..183622388,-#_8b9216f287d9ae16caf318fca0da76efp4@APOBEC4
2.55e-98FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_8b9216f287d9ae16caf318fca0da76efp@chr2:162762361..162762364, +
2.55e-98FFCP PHASE1:Hg19::chr1:183622379..183622388,-#_8b9216f287d9ae16caf318fca0da76efp4@APOBEC4
2.55e-98FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_8b9216f287d9ae16caf318fca0da76efp@chr2:162762361..162762364, +
1.36e-86FFCP PHASE2:Mm9::chrX:54476786..54476810,+#_edd105fca4446572439cec89cd861450p@chrX:54476786..54476810, +
1.36e-86FFCP PHASE1:Mm9::chr13:30878406..30878419,+#_edd105fca4446572439cec89cd861450p@chr13:30878406..30878419, +
1.36e-86FFCP PHASE1:Mm9::chrX:54476786..54476810,+#_edd105fca4446572439cec89cd861450p@chrX:54476786..54476810, +
1.36e-86FFCP PHASE2:Mm9::chr13:30878406..30878419,+#_edd105fca4446572439cec89cd861450p@chr13:30878406..30878419, +
1.01e-74FFCP PHASE2:Mm9::chr16:52032670..52032685,+#_6985fcf778f87a8a4c688153821fb99fp@chr16:52032670..52032685, +
1.01e-74FFCP PHASE1:Mm9::chr16:52032670..52032685,+#_6985fcf778f87a8a4c688153821fb99fp@chr16:52032670..52032685, +
2.41e-74FFCP PHASE2:Mm9::chr16:93777453..93777464,+#_fd1bda01ec75eb93832e3c46840940eap@chr16:93777453..93777464, +
2.41e-74FFCP PHASE2:Mm9::chr14:54795946..54795960,+#_fd1bda01ec75eb93832e3c46840940eap1@ENSMUST00000103701
2.41e-74FFCP PHASE1:Mm9::chr14:54795946..54795960,+#_fd1bda01ec75eb93832e3c46840940eap1@ENSMUST00000103701
2.41e-74FFCP PHASE1:Mm9::chr16:93777453..93777464,+#_fd1bda01ec75eb93832e3c46840940eap@chr16:93777453..93777464, +
2.48e-72FFCP PHASE2:Mm9::chr14:122362270..122362291,-#_059b98a511095131c5848959162cd533p@chr14:122362270..122362291, -
2.48e-72FFCP PHASE1:Mm9::chr11:11587720..11587735,+#_059b98a511095131c5848959162cd533p@chr11:11587720..11587735, +
2.48e-72FFCP PHASE2:Mm9::chr14:54827490..54827502,+#_059b98a511095131c5848959162cd533p@chr14:54827490..54827502, +
2.48e-72FFCP PHASE1:Mm9::chr11:11592840..11592849,+#_059b98a511095131c5848959162cd533p@chr11:11592840..11592849, +
2.48e-72FFCP PHASE1:Mm9::chr14:54827490..54827502,+#_059b98a511095131c5848959162cd533p@chr14:54827490..54827502, +
2.48e-72FFCP PHASE1:Mm9::chr13:30853488..30853499,+#_059b98a511095131c5848959162cd533p@chr13:30853488..30853499, +
2.48e-72FFCP PHASE1:Mm9::chr15:80403112..80403122,+#_059b98a511095131c5848959162cd533p12@Grap2
2.48e-72FFCP PHASE2:Mm9::chr11:11587720..11587735,+#_059b98a511095131c5848959162cd533p@chr11:11587720..11587735, +
2.48e-72FFCP PHASE2:Mm9::chr13:30853488..30853499,+#_059b98a511095131c5848959162cd533p@chr13:30853488..30853499, +
2.48e-72FFCP PHASE2:Mm9::chr11:11592840..11592849,+#_059b98a511095131c5848959162cd533p@chr11:11592840..11592849, +
2.48e-72FFCP PHASE2:Mm9::chr15:80403112..80403122,+#_059b98a511095131c5848959162cd533p12@Grap2
2.48e-72FFCP PHASE1:Mm9::chr14:122362270..122362291,-#_059b98a511095131c5848959162cd533p@chr14:122362270..122362291, -
2.39e-66FFCP PHASE1:Hg19::chr9:75772924..75772957,+#_9a81cdf323aecbc08781d9547a53bd44p17@ANXA1
2.39e-66FFCP PHASE2:Hg19::chr9:75772924..75772957,+#_9a81cdf323aecbc08781d9547a53bd44p17@ANXA1
4.66e-66FFCP PHASE1:Hg19::chr2:204816181..204816219,-#_7ea8c3bee702d073a5e6bc73ca99496bp@chr2:204816181..204816219, -
4.66e-66FFCP PHASE2:Hg19::chr2:204816181..204816219,-#_7ea8c3bee702d073a5e6bc73ca99496bp@chr2:204816181..204816219, -
4.66e-66FFCP PHASE2:Hg19::chr11:118209514..118209525,+#_7ea8c3bee702d073a5e6bc73ca99496bp@chr11:118209514..118209525, +
4.66e-66FFCP PHASE1:Hg19::chr20:37493438..37493456,-#_7ea8c3bee702d073a5e6bc73ca99496bp@chr20:37493438..37493456, -
4.66e-66FFCP PHASE1:Hg19::chr11:118209514..118209525,+#_7ea8c3bee702d073a5e6bc73ca99496bp@chr11:118209514..118209525, +
4.66e-66FFCP PHASE2:Hg19::chr20:37493438..37493456,-#_7ea8c3bee702d073a5e6bc73ca99496bp@chr20:37493438..37493456, -
1.05e-65FFCP PHASE1:Mm9::chr14:53242248..53242261,+#_8edd4fb6a56c5e8147903738a5dec7dap@chr14:53242248..53242261, +
1.05e-65FFCP PHASE2:Mm9::chr14:53242248..53242261,+#_8edd4fb6a56c5e8147903738a5dec7dap@chr14:53242248..53242261, +
1.74e-65FFCP PHASE2:Mm9::chr5:123439274..123439290,+#_4eac811c5e035f22e6874041cf59ad63p4@ENSMUST00000148466, p4@uc008zmw.1
1.74e-65FFCP PHASE1:Mm9::chr5:123439274..123439290,+#_4eac811c5e035f22e6874041cf59ad63p4@ENSMUST00000148466, p4@uc008zmw.1
2.25e-65FFCP PHASE1:Mm9::chr1:140069290..140069308,+#_df5be0fb771e3c380e33fe5b6715f7fdp@chr1:140069290..140069308, +
2.25e-65FFCP PHASE2:Mm9::chr5:123465978..123465989,-#_df5be0fb771e3c380e33fe5b6715f7fdp@chr5:123465978..123465989, -
2.25e-65FFCP PHASE1:Mm9::chr15:80403104..80403111,+#_df5be0fb771e3c380e33fe5b6715f7fdp10@Grap2
2.25e-65FFCP PHASE2:Mm9::chr15:80403104..80403111,+#_df5be0fb771e3c380e33fe5b6715f7fdp10@Grap2
2.25e-65FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_df5be0fb771e3c380e33fe5b6715f7fdp@chr1:140069290..140069308, +
2.25e-65FFCP PHASE1:Mm9::chr5:123465978..123465989,-#_df5be0fb771e3c380e33fe5b6715f7fdp@chr5:123465978..123465989, -
2.9e-65FFCP PHASE1:Mm9::chr6:41504409..41504422,-#_d67395dacc164a39b05b2dccae661e42p@chr6:41504409..41504422, -
2.9e-65FFCP PHASE1:Mm9::chr11:46200242..46200255,+#_d67395dacc164a39b05b2dccae661e42p@chr11:46200242..46200255, +
2.9e-65FFCP PHASE2:Mm9::chr14:54817583..54817593,-#_d67395dacc164a39b05b2dccae661e42p@chr14:54817583..54817593, -
2.9e-65FFCP PHASE2:Mm9::chr6:41504409..41504422,-#_d67395dacc164a39b05b2dccae661e42p@chr6:41504409..41504422, -
2.9e-65FFCP PHASE1:Mm9::chr14:54817583..54817593,-#_d67395dacc164a39b05b2dccae661e42p@chr14:54817583..54817593, -
2.9e-65FFCP PHASE2:Mm9::chr11:46200242..46200255,+#_d67395dacc164a39b05b2dccae661e42p@chr11:46200242..46200255, +
3.74e-65FFCP PHASE2:Mm9::chr4:32328217..32328228,-#_d0422a2efc2ffc2dae6ca3fcc45f68a5p@chr4:32328217..32328228, -
3.74e-65FFCP PHASE1:Mm9::chr4:32328217..32328228,-#_d0422a2efc2ffc2dae6ca3fcc45f68a5p@chr4:32328217..32328228, -
6.21e-65FFCP PHASE2:Mm9::chr5:123465955..123465966,-#_c9021d28cf7c0d417e94b05c907492cdp@chr5:123465955..123465966, -
6.21e-65FFCP PHASE1:Mm9::chr11:46200110..46200124,-#_c9021d28cf7c0d417e94b05c907492cdp@chr11:46200110..46200124, -
6.21e-65FFCP PHASE1:Mm9::chr13:105412781..105412798,+#_c9021d28cf7c0d417e94b05c907492cdp@chr13:105412781..105412798, +
6.21e-65FFCP PHASE2:Mm9::chr11:46200110..46200124,-#_c9021d28cf7c0d417e94b05c907492cdp@chr11:46200110..46200124, -
6.21e-65FFCP PHASE1:Mm9::chr5:123465955..123465966,-#_c9021d28cf7c0d417e94b05c907492cdp@chr5:123465955..123465966, -
6.21e-65FFCP PHASE2:Mm9::chr13:105412781..105412798,+#_c9021d28cf7c0d417e94b05c907492cdp@chr13:105412781..105412798, +
1.0e-60FFCP PHASE1:Mm9::chr2:11097490..11097500,+#_a734ae7b5204b2a4fb6712376d05e1bbp@chr2:11097490..11097500, +
1.0e-60FFCP PHASE2:Mm9::chr2:11097490..11097500,+#_a734ae7b5204b2a4fb6712376d05e1bbp@chr2:11097490..11097500, +
1.33e-60FFCP PHASE2:Mm9::chr12:70398221..70398232,-#_4aaadb56cfe4507cd800f94adce5c9b4p@chr12:70398221..70398232, -
1.33e-60FFCP PHASE2:Mm9::chr7:150943007..150943022,+#_4aaadb56cfe4507cd800f94adce5c9b4p@chr7:150943007..150943022, +
1.33e-60FFCP PHASE1:Mm9::chr5:108160486..108160515,-#_4aaadb56cfe4507cd800f94adce5c9b4p@chr5:108160486..108160515, -
1.33e-60FFCP PHASE2:Mm9::chr10:128157769..128157772,-#_4aaadb56cfe4507cd800f94adce5c9b4p@chr10:128157769..128157772, -
1.33e-60FFCP PHASE1:Mm9::chr12:70398221..70398232,-#_4aaadb56cfe4507cd800f94adce5c9b4p@chr12:70398221..70398232, -
1.33e-60FFCP PHASE2:Mm9::chr5:108160486..108160515,-#_4aaadb56cfe4507cd800f94adce5c9b4p@chr5:108160486..108160515, -
1.33e-60FFCP PHASE1:Mm9::chr7:150943007..150943022,+#_4aaadb56cfe4507cd800f94adce5c9b4p@chr7:150943007..150943022, +
1.33e-60FFCP PHASE1:Mm9::chr10:128157769..128157772,-#_4aaadb56cfe4507cd800f94adce5c9b4p@chr10:128157769..128157772, -
1.77e-60FFCP PHASE2:Mm9::chr14:53414758..53414769,+#_1f8f644b8609084730aba78ce49e3b93p1@ENSMUST00000103582
1.77e-60FFCP PHASE1:Mm9::chr14:53414758..53414769,+#_1f8f644b8609084730aba78ce49e3b93p1@ENSMUST00000103582
2.34e-60FFCP PHASE2:Mm9::chr2:73290853..73290866,+#_ae28431bce7db9f03da0ddec4900cb77p@chr2:73290853..73290866, +
2.34e-60FFCP PHASE1:Mm9::chr2:73290853..73290866,+#_ae28431bce7db9f03da0ddec4900cb77p@chr2:73290853..73290866, +
4.1e-60FFCP PHASE2:Mm9::chr1:138476217..138476228,+#_a5366871066c9d4c04b1968780e5d443p@chr1:138476217..138476228, +
4.1e-60FFCP PHASE1:Mm9::chr1:138476217..138476228,+#_a5366871066c9d4c04b1968780e5d443p@chr1:138476217..138476228, +
4.1e-60FFCP PHASE2:Mm9::chr9:14708434..14708444,-#_a5366871066c9d4c04b1968780e5d443p8@Folr4
4.1e-60FFCP PHASE1:Mm9::chr9:14708434..14708444,-#_a5366871066c9d4c04b1968780e5d443p8@Folr4
4.1e-60FFCP PHASE1:Mm9::chr2:11181142..11181148,-#_a5366871066c9d4c04b1968780e5d443p@chr2:11181142..11181148, -
4.1e-60FFCP PHASE2:Mm9::chr2:11181142..11181148,-#_a5366871066c9d4c04b1968780e5d443p@chr2:11181142..11181148, -
6.9e-59FFCP PHASE2:Mm9::chr11:87558695..87558707,+#_01cf4161e86d706bdd48acc555beace5p@chr11:87558695..87558707, +
6.9e-59FFCP PHASE2:Mm9::chrX:54465221..54465232,+#_01cf4161e86d706bdd48acc555beace5p4@Cd40lg
6.9e-59FFCP PHASE2:Mm9::chrX:54477240..54477286,+#_01cf4161e86d706bdd48acc555beace5p@chrX:54477240..54477286, +
6.9e-59FFCP PHASE1:Mm9::chrX:54465221..54465232,+#_01cf4161e86d706bdd48acc555beace5p4@Cd40lg
6.9e-59FFCP PHASE1:Mm9::chrX:54477240..54477286,+#_01cf4161e86d706bdd48acc555beace5p@chrX:54477240..54477286, +
6.9e-59FFCP PHASE1:Mm9::chr11:87558695..87558707,+#_01cf4161e86d706bdd48acc555beace5p@chr11:87558695..87558707, +
1.09e-58FFCP PHASE2:Mm9::chr4:32339235..32339263,+#_ff2dc3d1aa9b41b139d36883f548b90ep@chr4:32339235..32339263, +
1.09e-58FFCP PHASE1:Mm9::chr4:32339235..32339263,+#_ff2dc3d1aa9b41b139d36883f548b90ep@chr4:32339235..32339263, +
1.71e-58FFCP PHASE1:Mm9::chr16:23175296..23175310,+#_b2bb048847c0143204bc5bb7da088893p3@uc007ytl.1
1.71e-58FFCP PHASE2:Mm9::chr19:10904395..10904400,-#_b2bb048847c0143204bc5bb7da088893p5@Cd6
1.71e-58FFCP PHASE2:Mm9::chr16:23175296..23175310,+#_b2bb048847c0143204bc5bb7da088893p3@uc007ytl.1
1.71e-58FFCP PHASE1:Mm9::chr19:10904395..10904400,-#_b2bb048847c0143204bc5bb7da088893p5@Cd6
2.15e-58FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_029cea7931789ccd3137d05f92f75c11p1@ENSMUST00000103733
2.15e-58FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_029cea7931789ccd3137d05f92f75c11p1@ENSMUST00000103733
2.69e-58FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_421f2ccb8d30e8551eedf2dc2ab6a889p3@Tnfrsf25
2.69e-58FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_421f2ccb8d30e8551eedf2dc2ab6a889p3@Tnfrsf25
2.69e-58FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_421f2ccb8d30e8551eedf2dc2ab6a889p@chr4:32339511..32339518, +
2.69e-58FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_421f2ccb8d30e8551eedf2dc2ab6a889p@chr4:32339511..32339518, +
3.38e-58FFCP PHASE2:Mm9::chr6:48656532..48656548,+#_1cf518f4f2c7a26e7ba4b0939d4e90c6p@chr6:48656532..48656548, +
3.38e-58FFCP PHASE1:Mm9::chr6:48656532..48656548,+#_1cf518f4f2c7a26e7ba4b0939d4e90c6p@chr6:48656532..48656548, +
3.91e-58FFCP PHASE2:Mm9::chr13:30912611..30912629,-#_a78a578b61b90fc086fa648dc287f2f3p@chr13:30912611..30912629, -
3.91e-58FFCP PHASE1:Mm9::chr13:105077571..105077578,+#_a78a578b61b90fc086fa648dc287f2f3p7@Adamts6

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