FFCP PHASE1:Hg19::chr19:54711890..54711897,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr19:54711890..54711897,-
|short_description=p16@RPS9
|description=CAGE_peak_16_at_RPS9_5end
|association_with_transcript=-375bp_to_BC020462_5end
|EntrezGene=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6203 | |EntrezGene=6203 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=10442 | |HGNC=10442 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-375bp_to_BC020462_5end | |||
|cluster_id=chr19:54711890..54711897,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_16_at_RPS9_5end | |||
|id=chr19:54711890..54711897,- | |||
|ontology_enrichment_celltype=CL:0002057!9.37e-49!42;CL:0000766!5.36e-46!76;CL:0000860!4.22e-45!45;CL:0002194!1.30e-32!63;CL:0000576!1.30e-32!63;CL:0000040!1.30e-32!63;CL:0000559!1.30e-32!63;CL:0002009!1.95e-31!65;CL:0000763!7.16e-29!112;CL:0000049!7.16e-29!112;CL:0000839!8.74e-29!70;CL:0000738!1.35e-28!140;CL:0000557!2.68e-28!71;CL:0000094!3.30e-25!8;CL:0000037!9.44e-22!172;CL:0000566!9.44e-22!172;CL:0002087!1.03e-20!119;CL:0002393!1.33e-20!9;CL:0002397!1.33e-20!9;CL:0000988!4.18e-20!182;CL:0002032!5.74e-20!165;CL:0000837!5.74e-20!165;CL:0000081!4.75e-18!11;CL:0002031!1.72e-16!124;CL:0000767!1.01e-12!3;CL:0000875!1.23e-12!3;CL:0002396!1.23e-12!3;CL:0000771!6.63e-10!2;CL:0000775!8.36e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000094;1.82e-33;8!CL:0000081;2.37e-24;11!CL:0000771;8.68e-23;2!CL:0000775;2.10e-15;3!CL:0000766;5.40e-09;69!CL:0000860;9.03e-08;33!CL:0002057;9.03e-08;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000094,1.50e-33,8;CL:0000081,2.06e-24,11;CL:0000771,8.70e-23,2;CL:0000766,7.47e-16,72;CL:0000775,2.10e-15,3;CL:0000763,4.29e-10,108;CL:0000049,4.29e-10,108;CL:0000738,2.87e-09,136;CL:0000860,1.78e-08,42;CL:0002057,1.78e-08,42;CL:0000473,2.30e-07,48;CL:0000234,2.30e-07,48;CL:0000037,3.62e-07,168 | |||
|ontology_enrichment_development_v019=CL:0002057;3.52e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.12e-45!102;UBERON:0003061!6.12e-45!102;UBERON:0002193!3.34e-40!112;UBERON:0000178!4.40e-26!15;UBERON:0000179!4.40e-26!15;UBERON:0000463!4.40e-26!15;UBERON:0002371!1.81e-24!80;UBERON:0001474!2.34e-22!86;UBERON:0002405!3.43e-18!115;UBERON:0004765!3.58e-18!101;UBERON:0001434!3.58e-18!101;UBERON:0003081!7.86e-17!216;UBERON:0002204!9.67e-09!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.47e-43;15!UBERON:0000179;2.47e-43;15!UBERON:0000463;2.47e-43;15!UBERON:0002390;7.99e-19;32!UBERON:0002193;1.35e-10;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.34e-43,15;UBERON:0000179,1.34e-43,15;UBERON:0000463,1.34e-43,15;UBERON:0002390,1.59e-18,98;UBERON:0003061,1.59e-18,98;UBERON:0002193,1.22e-16,108;UBERON:0003081,6.62e-08,203 | |||
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| ||
|short_description=p16@RPS9 | |||
}} | }} |
Latest revision as of 21:35, 19 September 2015
Short description: | p16@RPS9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_RPS9_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -375bp_to_BC020462_5end |
EntrezGene: | RPS9 |
HGNC: | 10442 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte | 1.50e-33 | 8 |
blood cell | 2.06e-24 | 11 |
eosinophil | 8.70e-23 | 2 |
myeloid leukocyte | 7.47e-16 | 72 |
neutrophil | 2.10e-15 | 3 |
myeloid cell | 4.29e-10 | 108 |
common myeloid progenitor | 4.29e-10 | 108 |
leukocyte | 2.87e-09 | 136 |
classical monocyte | 1.78e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.78e-08 | 42 |
defensive cell | 2.30e-07 | 48 |
phagocyte | 2.30e-07 | 48 |
hematopoietic stem cell | 3.62e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
blood | 1.34e-43 | 15 |
haemolymphatic fluid | 1.34e-43 | 15 |
organism substance | 1.34e-43 | 15 |
hematopoietic system | 1.59e-18 | 98 |
blood island | 1.59e-18 | 98 |
hemolymphoid system | 1.22e-16 | 108 |
lateral plate mesoderm | 6.62e-08 | 203 |