FFCP PHASE1:Hg19::chr19:56368803..56368835,+: Difference between revisions
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|id=chr19:56368803..56368835,+
|short_description=p1@NLRP4
|description=CAGE_peak_1_at_NLRP4_5end
|association_with_transcript=0bp_to_uc002qmf.2_5end
|EntrezGene=1...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=147945 | |EntrezGene=147945 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22943 | |HGNC=22943 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc002qmf.2_5end | |||
|cluster_id=chr19:56368803..56368835,+ | |||
|coexpression_cluster_id=C62 | |||
|description=CAGE_peak_1_at_NLRP4_5end | |||
|id=chr19:56368803..56368835,+ | |||
|ontology_enrichment_celltype=CL:0000945!2.56e-31!24;CL:0000826!2.56e-31!24;CL:0000236!3.56e-20!14;CL:0000838!1.92e-12!52;CL:0000542!3.86e-12!53;CL:0000051!3.86e-12!53;CL:0000453!1.48e-11!5;CL:0001014!3.33e-08!2;CL:0001016!3.33e-08!2;CL:0000738!5.92e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.03e-22;24!CL:0000946;1.65e-16;1!CL:0000786;1.65e-16;1!CL:0000236;3.95e-11;13!CL:0000542;5.40e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,8.87e-23,24;CL:0000826,8.87e-23,24;CL:0000236,1.04e-17,14;CL:0000946,1.93e-16,1;CL:0000786,1.93e-16,1;CL:0000980,1.93e-16,1;CL:0000838,2.06e-10,52;CL:0000542,3.28e-10,53;CL:0000051,3.28e-10,53;CL:0000785,6.94e-09,2;CL:0000955,6.94e-09,2;CL:0000818,6.94e-09,2;CL:0000954,6.94e-09,2;CL:0000816,6.94e-09,2 | |||
|ontology_enrichment_development_v019=CL:0000954;6.42e-09;2!CL:0000051;5.40e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060058;1.17e-14;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,1.17e-14,10 | |||
|ontology_enrichment_uberon=UBERON:0001049!4.50e-34!57;UBERON:0005068!4.50e-34!57;UBERON:0006241!4.50e-34!57;UBERON:0007135!4.50e-34!57;UBERON:0002616!3.20e-27!59;UBERON:0002780!4.35e-25!41;UBERON:0001890!4.35e-25!41;UBERON:0006240!4.35e-25!41;UBERON:0003080!2.16e-24!42;UBERON:0007023!6.79e-23!115;UBERON:0000955!4.72e-22!69;UBERON:0006238!4.72e-22!69;UBERON:0001017!1.86e-21!82;UBERON:0003075!1.72e-20!86;UBERON:0007284!1.72e-20!86;UBERON:0005743!3.50e-20!86;UBERON:0002791!2.23e-19!33;UBERON:0002346!2.67e-19!90;UBERON:0001893!1.01e-18!34;UBERON:0002020!1.28e-18!34;UBERON:0003528!1.28e-18!34;UBERON:0000073!1.05e-17!94;UBERON:0001016!1.05e-17!94;UBERON:0002298!1.52e-15!8;UBERON:0003056!1.81e-15!61;UBERON:0001869!1.47e-14!32;UBERON:0000153!1.08e-13!129;UBERON:0007811!1.08e-13!129;UBERON:0000033!1.78e-13!123;UBERON:0002619!7.31e-13!22;UBERON:0001950!1.80e-11!20;UBERON:0001896!1.84e-11!3;UBERON:0005290!1.84e-11!3;UBERON:0010096!1.84e-11!3;UBERON:0000956!3.73e-11!25;UBERON:0000203!3.73e-11!25;UBERON:0003076!1.01e-10!15;UBERON:0003057!1.01e-10!15;UBERON:0002420!7.86e-10!9;UBERON:0007245!7.86e-10!9;UBERON:0010009!7.86e-10!9;UBERON:0010011!7.86e-10!9;UBERON:0000454!7.86e-10!9;UBERON:0002308!1.00e-09!9;UBERON:0000125!1.00e-09!9;UBERON:0004121!5.59e-09!169;UBERON:0000924!1.25e-08!173;UBERON:0006601!1.25e-08!173;UBERON:0009663!2.43e-08!7;UBERON:0001894!3.19e-08!7;UBERON:0006222!3.19e-08!7;UBERON:0001871!3.44e-07!7;UBERON:0004733!4.45e-07!12;UBERON:0002028!4.45e-07!12;UBERON:0007277!4.45e-07!12;UBERON:0000349!5.82e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0002336;1.65e-16;1!UBERON:0002372;1.65e-16;1!UBERON:0002038;1.65e-16;1!UBERON:0011215;1.65e-16;1!UBERON:0001018;1.65e-16;1!UBERON:0001961;1.65e-16;1!UBERON:0001744;1.65e-16;1!UBERON:0009661;1.65e-16;1!UBERON:0002950;1.65e-16;1!UBERON:0002473;1.65e-16;1!UBERON:0005340;1.65e-16;1!UBERON:0003544;1.65e-16;1!UBERON:0005970;1.65e-16;1!UBERON:0002316;1.65e-16;1!UBERON:0001020;1.65e-16;1!UBERON:0001042;1.65e-16;1!UBERON:0001891;1.65e-16;1!UBERON:0001735;1.65e-16;1!UBERON:0002437;1.65e-16;1!UBERON:0006562;6.42e-09;2!UBERON:0002702;6.42e-09;2!UBERON:0005162;6.42e-09;2!UBERON:0000122;6.42e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002372,1.04e-16,1;UBERON:0001961,1.04e-16,1;UBERON:0001744,1.04e-16,1;UBERON:0001735,1.04e-16,1;UBERON:0002038,1.21e-16,1;UBERON:0009661,1.21e-16,1;UBERON:0002950,1.21e-16,1;UBERON:0001891,1.21e-16,1;UBERON:0009616,1.21e-16,1;UBERON:0010286,1.21e-16,1;UBERON:0002336,2.63e-16,1;UBERON:0011215,2.63e-16,1;UBERON:0001018,2.63e-16,1;UBERON:0002473,2.63e-16,1;UBERON:0005340,2.63e-16,1;UBERON:0003544,2.63e-16,1;UBERON:0005970,2.63e-16,1;UBERON:0002316,2.63e-16,1;UBERON:0001020,2.63e-16,1;UBERON:0002437,2.63e-16,1;UBERON:0005162,8.09e-09,2;UBERON:0000122,8.09e-09,2;UBERON:0002702,8.74e-09,2 | |||
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| ||
|short_description=p1@NLRP4 | |||
}} | }} |
Latest revision as of 03:30, 20 September 2015
Short description: | p1@NLRP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NLRP4_5end |
Coexpression cluster: | C62_Burkitt_tonsil_CD19_submaxillary_spleen_salivary_lymph |
Association with transcript: | 0bp_to_uc002qmf.2_5end |
EntrezGene: | NLRP4 |
HGNC: | 22943 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 8.87e-23 | 24 |
pro-B cell | 8.87e-23 | 24 |
B cell | 1.04e-17 | 14 |
antibody secreting cell | 1.93e-16 | 1 |
plasma cell | 1.93e-16 | 1 |
plasmablast | 1.93e-16 | 1 |
lymphoid lineage restricted progenitor cell | 2.06e-10 | 52 |
lymphocyte | 3.28e-10 | 53 |
common lymphoid progenitor | 3.28e-10 | 53 |
mature B cell | 6.94e-09 | 2 |
pre-B-II cell | 6.94e-09 | 2 |
transitional stage B cell | 6.94e-09 | 2 |
small pre-B-II cell | 6.94e-09 | 2 |
immature B cell | 6.94e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
tonsil | 1.04e-16 | 1 |
mucosa-associated lymphoid tissue | 1.04e-16 | 1 |
lymphoid tissue | 1.04e-16 | 1 |
tonsillar ring | 1.04e-16 | 1 |
substantia nigra | 1.21e-16 | 1 |
midbrain nucleus | 1.21e-16 | 1 |
regional part of midbrain | 1.21e-16 | 1 |
midbrain | 1.21e-16 | 1 |
presumptive midbrain | 1.21e-16 | 1 |
midbrain neural tube | 1.21e-16 | 1 |
corpus callosum | 2.63e-16 | 1 |
central nervous system cell part cluster | 2.63e-16 | 1 |
axon tract | 2.63e-16 | 1 |
intercerebral commissure | 2.63e-16 | 1 |
dorsal telencephalic commissure | 2.63e-16 | 1 |
brain white matter | 2.63e-16 | 1 |
brain commissure | 2.63e-16 | 1 |
white matter | 2.63e-16 | 1 |
nervous system commissure | 2.63e-16 | 1 |
cerebral hemisphere white matter | 2.63e-16 | 1 |
multi cell component structure | 8.09e-09 | 2 |
neuron projection bundle | 8.09e-09 | 2 |
middle frontal gyrus | 8.74e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 1.17e-14 | 10 |