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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000467,UBERON:0001062,UBERON:0003102,UBERON:0002416
|DRA_sample_Accession=CAGE@SAMD00005567
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000057,CL:0002620
|accession_numbers=CAGE;DRX008291;DRR009163;DRZ000588;DRZ001973;DRZ011938;DRZ013323
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000251
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.69!489.05!LHX9;;chr7:19157248..19157268,-!p1@TWIST1!1.85!184.28!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.73!52.19!PRRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.58!36.98!HOXC5;;chr9:132427972..132428056,+!p1@PRRX2!1.57!47.25!PRRX2;;chr10:119303078..119303169,+!p2@EMX2!1.41!24.58!EMX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.39!118.59!CREB3L1;;chr15:57511609..57511651,+!p2@TCF12!1.39!38.89!TCF12;;chr1:170632285..170632309,+!p1@PRRX1!1.39!26.60!PRRX1;;chr2:176969228..176969260,+!p1@HOXD11!1.39!23.37!HOXD11;;chr10:28034739..28034756,-!p1@MKX!1.37!22.57!MKX;;chr8:67525443..67525459,-!p2@MYBL1!1.36!32.34!MYBL1;;chr1:197886421..197886432,+!p2@LHX9!1.34!20.65!LHX9;;chr5:72744594..72744609,-!p1@FOXD1!1.28!80.30!FOXD1;;chr1:170633348..170633399,+!p2@PRRX1!1.28!24.38!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!1.16!23.17!TWIST2;;chr4:174450089..174450153,-!p2@HAND2!1.15!13.10!HAND2;;chr7:27224842..27224872,-!p1@HOXA11!1.14!12.80!HOXA11;;chr4:174451370..174451387,-!p1@HAND2!1.12!12.29!HAND2;;chr6:19837592..19837621,+!p1@ID4!1.11!73.05!ID4;;chr7:27224795..27224840,-!p2@HOXA11!1.11!11.99!HOXA11;;chr4:81118647..81118666,+!p1@PRDM8!1.08!14.61!PRDM8;;chr2:176969179..176969226,+!p2@HOXD11!1.08!11.08!HOXD11;;chr1:197886665..197886732,+!p3@LHX9!1.07!10.68!LHX9;;chr11:46299539..46299620,+!p2@CREB3L1!1.05!17.63!CREB3L1;;chr7:27205136..27205164,-!p1@HOXA9!1.05!10.18!HOXA9;;chr20:55204351..55204377,+!p1@TFAP2C!1.02!12.19!TFAP2C;;chr2:176994408..176994492,+!p1@HOXD8!1.02!9.47!HOXD8;;chr3:157823517..157823562,-!p1@SHOX2!1.01!9.87!SHOX2;;chr5:72744445..72744466,-!p2@FOXD1!1.00!15.01!FOXD1;;chr15:37392534..37392562,-!p10@MEIS2!1.00!9.97!MEIS2;;chr5:2751762..2751784,-!p1@IRX2!1.00!8.97!IRX2;;chr7:27205106..27205134,-!p2@HOXA9!0.99!8.87!HOXA9;;chr2:176969097..176969109,+!p3@HOXD11!0.99!8.87!HOXD11;;chr1:170633262..170633285,+!p3@PRRX1!0.98!9.87!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.98!8.46!KDM5D;;chr2:176969124..176969155,+!p5@HOXD11!0.97!8.26!HOXD11;;chr11:65686802..65686818,+!p6@DRAP1!0.96!14.31!DRAP1;;chr2:172949484..172949522,+!p1@DLX1!0.96!8.06!DLX1;;chr11:65686732..65686756,+!p2@DRAP1!0.95!34.26!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!0.95!8.66!PRRX1;;chr3:147111231..147111281,+!p3@ZIC1!0.94!7.66!ZIC1;;chr1:170633058..170633084,+!p5@PRRX1!0.93!7.46!PRRX1;;chr4:111558135..111558198,-!p2@PITX2!0.91!7.05!PITX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.89!6.85!HOXC5;;chr8:93074803..93074845,-!p1@RUNX1T1!0.89!6.75!RUNX1T1;;chr19:47523058..47523114,+!p1@NPAS1!0.88!6.55!NPAS1;;chr12:54402745..54402788,+!p1@HOXC8!0.88!6.55!HOXC8;;chr12:53614115..53614154,-!p1@RARG!0.87!35.97!RARG;;chr19:13134772..13134822,+!p2@NFIX!0.87!9.77!NFIX;;chr16:51185172..51185197,-!p1@SALL1!0.87!6.45!SALL1;;chr7:27213893..27213954,-!p1@HOXA10!0.87!6.45!HOXA10;;chr2:172950227..172950249,+!p2@DLX1!0.87!6.35!DLX1;;chr2:239756671..239756732,+!p1@TWIST2!0.86!21.06!TWIST2;;chr15:37392616..37392638,-!p2@MEIS2!0.86!20.55!MEIS2;;chr12:80085061..80085119,-!p6@PAWR!0.84!9.67!PAWR;;chr6:10415276..10415341,-!p2@TFAP2A!0.84!7.25!TFAP2A;;chr5:72744562..72744573,-!p3@FOXD1!0.83!7.35!FOXD1;;chr2:8822176..8822196,+!p1@ID2!0.80!804.51!ID2;;chr8:49833948..49833973,-!p2@SNAI2!0.80!36.17!SNAI2;;chr11:65687362..65687436,+!p3@DRAP1!0.80!26.30!DRAP1;;chr3:147111198..147111225,+!p4@ZIC1!0.80!5.34!ZIC1;;chr4:4861385..4861398,+!p1@MSX1!0.79!16.22!MSX1;;chr2:172967621..172967637,-!p1@DLX2!0.79!14.81!DLX2;;chr1:170632250..170632277,+!p7@PRRX1!0.79!5.14!PRRX1;;chr15:37390850..37390909,-!p3@MEIS2!0.77!10.28!MEIS2;;chr5:321810..321877,+!p1@AHRR!0.76!16.52!AHRR;;chr6:100912752..100912778,-!p2@SIM1!0.76!4.74!SIM1;;chr10:119302645..119302712,+!p3@EMX2!0.76!4.74!EMX2;;chr15:37390482..37390572,-!p7@MEIS2!0.75!6.55!MEIS2;;chr15:83953397..83953425,-!p1@BNC1!0.75!5.44!BNC1;;chr5:88081308..88081333,-!p8@MEF2C!0.75!4.63!MEF2C;;chr15:37392576..37392589,-!p12@MEIS2!0.74!5.64!MEIS2;;chr5:72743793..72743855,-!p4@FOXD1!0.74!5.44!FOXD1;;chr6:100912785..100912822,-!p1@SIM1!0.74!4.53!SIM1;;chr1:44513995..44514031,+!p1@KLF17!0.74!4.53!KLF17;;chrY:2803415..2803468,+!p1@ZFY!0.74!4.43!ZFY;;chr10:119302232..119302265,+!p1@EMX2!0.74!4.43!EMX2;;chr8:49833978..49833996,-!p1@SNAI2!0.73!100.95!SNAI2;;chr7:137686763..137686784,-!p5@CREB3L2!0.73!8.06!CREB3L2;;chr15:37392703..37392717,-!p8@MEIS2!0.73!6.55!MEIS2;;chr21:36260773..36260804,-!p7@RUNX1!0.73!6.15!RUNX1;;chr3:147127142..147127168,+!p1@ZIC1!0.73!4.33!ZIC1;;chr11:12696071..12696086,+!p3@TEAD1!0.72!5.84!TEAD1;;chr1:170632723..170632739,+!p8@PRRX1!0.72!4.23!PRRX1;;chr11:65687222..65687240,+!p7@DRAP1!0.71!5.44!DRAP1;;chr10:28035133..28035148,-!p3@MKX!0.71!4.13!MKX;;chr20:55205825..55205847,+!p2@TFAP2C!0.71!4.13!TFAP2C;;chr15:37392724..37392757,-!p1@MEIS2!0.70!20.55!MEIS2;;chr1:23885981..23886002,-!p1@ID3!0.69!776.29!ID3;;chr18:22932080..22932170,-!p1@ZNF521!0.69!18.64!ZNF521;;chr2:19558373..19558392,-!p1@OSR1!0.69!11.89!OSR1;;chr18:53068911..53068935,-!p4@TCF4!0.69!4.53!TCF4;;chr2:200322654..200322707,-!p2@SATB2!0.68!5.74!SATB2;;chr1:197886772..197886790,+!p4@LHX9!0.68!3.83!LHX9;;chr14:62162258..62162269,+!p2@HIF1A!0.67!41.31!HIF1A;;chr3:128206762..128206781,-!p2@GATA2!0.67!26.09!GATA2;;chr2:85981107..85981120,+!p3@ATOH8!0.67!3.73!ATOH8;;chr15:57511589..57511608,+!p4@TCF12!0.67!3.73!TCF12;;chr1:170632477..170632506,+!p6@PRRX1!0.67!3.63!PRRX1;;chr12:115121962..115121987,-!p1@TBX3!0.66!34.66!TBX3;;chr11:46299186..46299195,+!p3@CREB3L1!0.66!4.03!CREB3L1;;chr2:102091566..102091581,-!p1@RFX8!0.66!3.53!RFX8;;chr7:27196267..27196311,-!p1@HOXA7!0.65!3.43!HOXA7;;chr12:124873357..124873401,-!p1@NCOR2!0.64!46.35!NCOR2;;chr7:19157043..19157088,-!p2@TWIST1!0.64!9.47!TWIST1;;chr6:10412600..10412637,-!p1@TFAP2A!0.64!6.05!TFAP2A;;chr10:119302508..119302559,+!p5@EMX2!0.64!3.32!EMX2;;chr2:102091144..102091183,-!p2@RFX8!0.64!3.32!RFX8;;chr11:65687158..65687216,+!p4@DRAP1!0.63!22.06!DRAP1;;chr15:37392094..37392116,-!p6@MEIS2!0.63!4.23!MEIS2;;chr2:172967242..172967265,-!p2@DLX2!0.63!3.22!DLX2;;chr2:172967276..172967296,-!p3@DLX2!0.63!3.22!DLX2;;chr10:28032421..28032494,-!p2@MKX!0.63!3.22!MKX;;chr8:67525473..67525518,-!p1@MYBL1!0.62!8.16!MYBL1;;chr15:37392593..37392607,-!p13@MEIS2!0.62!3.93!MEIS2;;chr1:119530493..119530572,-!p1@TBX15!0.62!3.12!TBX15;;chr12:80085120..80085156,-!p14@PAWR!0.62!3.12!PAWR;;chr11:65686952..65686975,+!p5@DRAP1!0.61!20.25!DRAP1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.61!15.11!LRRFIP2;;chr17:46622070..46622109,-!p1@HOXB2!0.61!7.76!HOXB2;;chr16:54964740..54964789,+!p1@IRX5!0.61!4.74!IRX5;;chr11:65687243..65687276,+!p8@DRAP1!0.61!4.43!DRAP1;;chr10:28035112..28035130,-!p5@MKX!0.60!3.02!MKX;;chr12:114843940..114843955,-!p2@TBX5!0.60!3.02!TBX5;;chr20:30193083..30193098,+!p1@ID1!0.59!290.17!ID1;;chr13:37494248..37494260,-!p3@SMAD9!0.59!2.92!SMAD9;;chr13:37494275..37494304,-!p2@SMAD9!0.59!2.92!SMAD9;;chr3:147111505..147111529,+!p6@ZIC1!0.59!2.92!ZIC1;;chr3:114343768..114343822,-!p1@ZBTB20!0.58!14.51!ZBTB20;;chr3:147110055..147110129,-!p1@ZIC4!0.58!2.82!ZIC4;;chr5:139492456..139492489,+!p7@PURA!0.58!2.82!PURA;;chr5:2751785..2751808,-!p2@IRX2!0.58!2.82!IRX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.58!2.82!RUNX1T1;;chr17:46682321..46682362,-!p1@HOXB6!0.58!2.82!HOXB6;;chr14:62162285..62162296,+!p3@HIF1A!0.57!17.33!HIF1A;;chr2:85980951..85981004,+!p1@ATOH8!0.57!4.84!ATOH8;;chr16:86612320..86612394,+!p1@FOXL1!0.57!2.72!FOXL1;;chr20:42543441..42543497,+!p1@TOX2!0.56!14.51!TOX2;;chr10:114710244..114710257,+!p3@TCF7L2!0.56!8.36!TCF7L2;;chr1:197886646..197886657,+!p5@LHX9!0.56!2.62!LHX9;;chr18:52969674..52969685,-!p24@TCF4!0.56!2.62!TCF4;;chr2:119604456..119604501,-!p2@EN1!0.56!2.62!EN1;;chr10:63809106..63809127,+!p1@ARID5B!0.55!42.92!ARID5B;;chr14:24837368..24837401,+!p1@NFATC4!0.55!7.05!NFATC4;;chr17:46622114..46622138,-!p4@HOXB2!0.55!4.33!HOXB2;;chr6:1389789..1389821,+!p1@FOXF2!0.55!3.83!FOXF2;;chr12:54447599..54447630,+!p3@HOXC4!0.55!3.32!HOXC4;;chr15:37390374..37390422,-!p9@MEIS2!0.55!3.32!MEIS2;;chr12:54394309..54394336,+!p2@HOXC9!0.55!2.52!HOXC9;;chr3:52001448..52001478,-!p2@PCBP4!0.54!44.03!PCBP4;;chr2:121493425..121493474,+!p1@GLI2!0.54!6.35!GLI2;;chr14:75894714..75894733,+!p1@JDP2!0.53!87.65!JDP2;;chr2:145275162..145275202,-!p2@ZEB2!0.53!17.53!ZEB2;;chr5:43067636..43067674,+!p6@ZNF131!0.53!3.53!ZNF131;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.53!2.62!GLIS1;;chr1:170632137..170632172,+!p10@PRRX1!0.53!2.42!PRRX1;;chr11:46316699..46316719,+!p10@CREB3L1!0.53!2.42!CREB3L1;;chr2:172967323..172967336,-!p4@DLX2!0.53!2.42!DLX2;;chr1:151032860..151032918,+!p1@MLLT11!0.52!35.16!MLLT11;;chr7:42276787..42276815,-!p1@GLI3!0.52!7.46!GLI3;;chr5:3595977..3595999,+!p1@IRX1!0.52!2.32!IRX1;;chr7:27212501..27212513,-!p5@HOXA10!0.52!2.32!HOXA10;;chrY:21906761..21906810,-!p2@KDM5D!0.52!2.32!KDM5D;;chr12:124873852..124873881,-!p3@NCOR2!0.51!17.33!NCOR2;;chr3:52001426..52001447,-!p3@PCBP4!0.51!7.66!PCBP4;;chr5:158526917..158526932,-!p1@EBF1!0.51!6.65!EBF1;;chr1:200379104..200379128,-!p2@ZNF281!0.51!6.55!ZNF281;;chr13:37494365..37494381,-!p1@SMAD9!0.51!4.43!SMAD9;;chr7:27192185..27192209,-!p1@HOXA3!0.51!2.22!HOXA3;;chr2:5832508..5832524,+!p1@SOX11!0.51!2.22!SOX11;;chr11:65667846..65667868,-!p1@FOSL1!0.50!75.56!FOSL1;;chr6:31126291..31126399,+!p1@TCF19!0.50!27.00!TCF19;;chr2:66662281..66662308,+!p1@MEIS1!0.50!9.37!MEIS1;;chr21:36421535..36421610,-!p2@RUNX1!0.49!9.37!RUNX1;;chr17:46621937..46621966,-!p2@HOXB2!0.49!6.95!HOXB2;;chr20:42543506..42543549,+!p2@TOX2!0.49!6.15!TOX2;;chr2:200323414..200323455,-!p1@SATB2!0.49!5.34!SATB2;;chr8:67525524..67525543,-!p3@MYBL1!0.49!3.93!MYBL1;;chr1:164528911..164528940,+!p7@PBX1!0.49!3.53!PBX1;;chr1:170632439..170632465,+!p11@PRRX1!0.49!2.12!PRRX1;;chr8:93115274..93115323,-!p4@RUNX1T1!0.49!2.12!RUNX1T1;;chr16:51185318..51185348,-!p2@SALL1!0.49!2.12!SALL1;;chr11:46333934..46333963,+!p5@CREB3L1!0.49!2.12!CREB3L1;;chr11:65686855..65686946,+!p1@DRAP1!0.48!205.64!DRAP1;;chr17:38256822..38256851,-!p1@NR1D1!0.48!21.36!NR1D1;;chr17:1958388..1958404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|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.69!489.05!LHX9;;chr7:19157248..19157268,-!p1@TWIST1!1.85!184.28!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.73!52.19!PRRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.58!36.98!HOXC5;;chr9:132427972..132428056,+!p1@PRRX2!1.57!47.25!PRRX2;;chr10:119303078..119303169,+!p2@EMX2!1.41!24.58!EMX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.39!118.59!CREB3L1;;chr15:57511609..57511651,+!p2@TCF12!1.39!38.89!TCF12;;chr1:170632285..170632309,+!p1@PRRX1!1.39!26.60!PRRX1;;chr2:176969228..176969260,+!p1@HOXD11!1.39!23.37!HOXD11;;chr10:28034739..28034756,-!p1@MKX!1.37!22.57!MKX;;chr8:67525443..67525459,-!p2@MYBL1!1.36!32.34!MYBL1;;chr1:197886421..197886432,+!p2@LHX9!1.34!20.65!LHX9;;chr5:72744594..72744609,-!p1@FOXD1!1.28!80.30!FOXD1;;chr1:170633348..170633399,+!p2@PRRX1!1.28!24.38!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!1.16!23.17!TWIST2;;chr4:174450089..174450153,-!p2@HAND2!1.15!13.10!HAND2;;chr7:27224842..27224872,-!p1@HOXA11!1.14!12.80!HOXA11;;chr4:174451370..174451387,-!p1@HAND2!1.12!12.29!HAND2;;chr6:19837592..19837621,+!p1@ID4!1.11!73.05!ID4;;chr7:27224795..27224840,-!p2@HOXA11!1.11!11.99!HOXA11;;chr4:81118647..81118666,+!p1@PRDM8!1.08!14.61!PRDM8;;chr2:176969179..176969226,+!p2@HOXD11!1.08!11.08!HOXD11;;chr1:197886665..197886732,+!p3@LHX9!1.07!10.68!LHX9;;chr11:46299539..46299620,+!p2@CREB3L1!1.05!17.63!CREB3L1;;chr7:27205136..27205164,-!p1@HOXA9!1.05!10.18!HOXA9;;chr20:55204351..55204377,+!p1@TFAP2C!1.02!12.19!TFAP2C;;chr2:176994408..176994492,+!p1@HOXD8!1.02!9.47!HOXD8;;chr3:157823517..157823562,-!p1@SHOX2!1.01!9.87!SHOX2;;chr5:72744445..72744466,-!p2@FOXD1!1.00!15.01!FOXD1;;chr15:37392534..37392562,-!p10@MEIS2!1.00!9.97!MEIS2;;chr5:2751762..2751784,-!p1@IRX2!1.00!8.97!IRX2;;chr7:27205106..27205134,-!p2@HOXA9!0.99!8.87!HOXA9;;chr2:176969097..176969109,+!p3@HOXD11!0.99!8.87!HOXD11;;chr1:170633262..170633285,+!p3@PRRX1!0.98!9.87!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.98!8.46!KDM5D;;chr2:176969124..176969155,+!p5@HOXD11!0.97!8.26!HOXD11;;chr11:65686802..65686818,+!p6@DRAP1!0.96!14.31!DRAP1;;chr2:172949484..172949522,+!p1@DLX1!0.96!8.06!DLX1;;chr11:65686732..65686756,+!p2@DRAP1!0.95!34.26!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!0.95!8.66!PRRX1;;chr3:147111231..147111281,+!p3@ZIC1!0.94!7.66!ZIC1;;chr1:170633058..170633084,+!p5@PRRX1!0.93!7.46!PRRX1;;chr4:111558135..111558198,-!p2@PITX2!0.91!7.05!PITX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.89!6.85!HOXC5;;chr8:93074803..93074845,-!p1@RUNX1T1!0.89!6.75!RUNX1T1;;chr19:47523058..47523114,+!p1@NPAS1!0.88!6.55!NPAS1;;chr12:54402745..54402788,+!p1@HOXC8!0.88!6.55!HOXC8;;chr12:53614115..53614154,-!p1@RARG!0.87!35.97!RARG;;chr19:13134772..13134822,+!p2@NFIX!0.87!9.77!NFIX;;chr16:51185172..51185197,-!p1@SALL1!0.87!6.45!SALL1;;chr7:27213893..27213954,-!p1@HOXA10!0.87!6.45!HOXA10;;chr2:172950227..172950249,+!p2@DLX1!0.87!6.35!DLX1;;chr2:239756671..239756732,+!p1@TWIST2!0.86!21.06!TWIST2;;chr15:37392616..37392638,-!p2@MEIS2!0.86!20.55!MEIS2;;chr12:80085061..80085119,-!p6@PAWR!0.84!9.67!PAWR;;chr6:10415276..10415341,-!p2@TFAP2A!0.84!7.25!TFAP2A;;chr5:72744562..72744573,-!p3@FOXD1!0.83!7.35!FOXD1;;chr2:8822176..8822196,+!p1@ID2!0.80!804.51!ID2;;chr8:49833948..49833973,-!p2@SNAI2!0.80!36.17!SNAI2;;chr11:65687362..65687436,+!p3@DRAP1!0.80!26.30!DRAP1;;chr3:147111198..147111225,+!p4@ZIC1!0.80!5.34!ZIC1;;chr4:4861385..4861398,+!p1@MSX1!0.79!16.22!MSX1;;chr2:172967621..172967637,-!p1@DLX2!0.79!14.81!DLX2;;chr1:170632250..170632277,+!p7@PRRX1!0.79!5.14!PRRX1;;chr15:37390850..37390909,-!p3@MEIS2!0.77!10.28!MEIS2;;chr5:321810..321877,+!p1@AHRR!0.76!16.52!AHRR;;chr6:100912752..100912778,-!p2@SIM1!0.76!4.74!SIM1;;chr10:119302645..119302712,+!p3@EMX2!0.76!4.74!EMX2;;chr15:37390482..37390572,-!p7@MEIS2!0.75!6.55!MEIS2;;chr15:83953397..83953425,-!p1@BNC1!0.75!5.44!BNC1;;chr5:88081308..88081333,-!p8@MEF2C!0.75!4.63!MEF2C;;chr15:37392576..37392589,-!p12@MEIS2!0.74!5.64!MEIS2;;chr5:72743793..72743855,-!p4@FOXD1!0.74!5.44!FOXD1;;chr6:100912785..100912822,-!p1@SIM1!0.74!4.53!SIM1;;chr1:44513995..44514031,+!p1@KLF17!0.74!4.53!KLF17;;chrY:2803415..2803468,+!p1@ZFY!0.74!4.43!ZFY;;chr10:119302232..119302265,+!p1@EMX2!0.74!4.43!EMX2;;chr8:49833978..49833996,-!p1@SNAI2!0.73!100.95!SNAI2;;chr7:137686763..137686784,-!p5@CREB3L2!0.73!8.06!CREB3L2;;chr15:37392703..37392717,-!p8@MEIS2!0.73!6.55!MEIS2;;chr21:36260773..36260804,-!p7@RUNX1!0.73!6.15!RUNX1;;chr3:147127142..147127168,+!p1@ZIC1!0.73!4.33!ZIC1;;chr11:12696071..12696086,+!p3@TEAD1!0.72!5.84!TEAD1;;chr1:170632723..170632739,+!p8@PRRX1!0.72!4.23!PRRX1;;chr11:65687222..65687240,+!p7@DRAP1!0.71!5.44!DRAP1;;chr10:28035133..28035148,-!p3@MKX!0.71!4.13!MKX;;chr20:55205825..55205847,+!p2@TFAP2C!0.71!4.13!TFAP2C;;chr15:37392724..37392757,-!p1@MEIS2!0.70!20.55!MEIS2;;chr1:23885981..23886002,-!p1@ID3!0.69!776.29!ID3;;chr18:22932080..22932170,-!p1@ZNF521!0.69!18.64!ZNF521;;chr2:19558373..19558392,-!p1@OSR1!0.69!11.89!OSR1;;chr18:53068911..53068935,-!p4@TCF4!0.69!4.53!TCF4;;chr2:200322654..200322707,-!p2@SATB2!0.68!5.74!SATB2;;chr1:197886772..197886790,+!p4@LHX9!0.68!3.83!LHX9;;chr14:62162258..62162269,+!p2@HIF1A!0.67!41.31!HIF1A;;chr3:128206762..128206781,-!p2@GATA2!0.67!26.09!GATA2;;chr2:85981107..85981120,+!p3@ATOH8!0.67!3.73!ATOH8;;chr15:57511589..57511608,+!p4@TCF12!0.67!3.73!TCF12;;chr1:170632477..170632506,+!p6@PRRX1!0.67!3.63!PRRX1;;chr12:115121962..115121987,-!p1@TBX3!0.66!34.66!TBX3;;chr11:46299186..46299195,+!p3@CREB3L1!0.66!4.03!CREB3L1;;chr2:102091566..102091581,-!p1@RFX8!0.66!3.53!RFX8;;chr7:27196267..27196311,-!p1@HOXA7!0.65!3.43!HOXA7;;chr12:124873357..124873401,-!p1@NCOR2!0.64!46.35!NCOR2;;chr7:19157043..19157088,-!p2@TWIST1!0.64!9.47!TWIST1;;chr6:10412600..10412637,-!p1@TFAP2A!0.64!6.05!TFAP2A;;chr10:119302508..119302559,+!p5@EMX2!0.64!3.32!EMX2;;chr2:102091144..102091183,-!p2@RFX8!0.64!3.32!RFX8;;chr11:65687158..65687216,+!p4@DRAP1!0.63!22.06!DRAP1;;chr15:37392094..37392116,-!p6@MEIS2!0.63!4.23!MEIS2;;chr2:172967242..172967265,-!p2@DLX2!0.63!3.22!DLX2;;chr2:172967276..172967296,-!p3@DLX2!0.63!3.22!DLX2;;chr10:28032421..28032494,-!p2@MKX!0.63!3.22!MKX;;chr8:67525473..67525518,-!p1@MYBL1!0.62!8.16!MYBL1;;chr15:37392593..37392607,-!p13@MEIS2!0.62!3.93!MEIS2;;chr1:119530493..119530572,-!p1@TBX15!0.62!3.12!TBX15;;chr12:80085120..80085156,-!p14@PAWR!0.62!3.12!PAWR;;chr11:65686952..65686975,+!p5@DRAP1!0.61!20.25!DRAP1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.61!15.11!LRRFIP2;;chr17:46622070..46622109,-!p1@HOXB2!0.61!7.76!HOXB2;;chr16:54964740..54964789,+!p1@IRX5!0.61!4.74!IRX5;;chr11:65687243..65687276,+!p8@DRAP1!0.61!4.43!DRAP1;;chr10:28035112..28035130,-!p5@MKX!0.60!3.02!MKX;;chr12:114843940..114843955,-!p2@TBX5!0.60!3.02!TBX5;;chr20:30193083..30193098,+!p1@ID1!0.59!290.17!ID1;;chr13:37494248..37494260,-!p3@SMAD9!0.59!2.92!SMAD9;;chr13:37494275..37494304,-!p2@SMAD9!0.59!2.92!SMAD9;;chr3:147111505..147111529,+!p6@ZIC1!0.59!2.92!ZIC1;;chr3:114343768..114343822,-!p1@ZBTB20!0.58!14.51!ZBTB20;;chr3:147110055..147110129,-!p1@ZIC4!0.58!2.82!ZIC4;;chr5:139492456..139492489,+!p7@PURA!0.58!2.82!PURA;;chr5:2751785..2751808,-!p2@IRX2!0.58!2.82!IRX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.58!2.82!RUNX1T1;;chr17:46682321..46682362,-!p1@HOXB6!0.58!2.82!HOXB6;;chr14:62162285..62162296,+!p3@HIF1A!0.57!17.33!HIF1A;;chr2:85980951..85981004,+!p1@ATOH8!0.57!4.84!ATOH8;;chr16:86612320..86612394,+!p1@FOXL1!0.57!2.72!FOXL1;;chr20:42543441..42543497,+!p1@TOX2!0.56!14.51!TOX2;;chr10:114710244..114710257,+!p3@TCF7L2!0.56!8.36!TCF7L2;;chr1:197886646..197886657,+!p5@LHX9!0.56!2.62!LHX9;;chr18:52969674..52969685,-!p24@TCF4!0.56!2.62!TCF4;;chr2:119604456..119604501,-!p2@EN1!0.56!2.62!EN1;;chr10:63809106..63809127,+!p1@ARID5B!0.55!42.92!ARID5B;;chr14:24837368..24837401,+!p1@NFATC4!0.55!7.05!NFATC4;;chr17:46622114..46622138,-!p4@HOXB2!0.55!4.33!HOXB2;;chr6:1389789..1389821,+!p1@FOXF2!0.55!3.83!FOXF2;;chr12:54447599..54447630,+!p3@HOXC4!0.55!3.32!HOXC4;;chr15:37390374..37390422,-!p9@MEIS2!0.55!3.32!MEIS2;;chr12:54394309..54394336,+!p2@HOXC9!0.55!2.52!HOXC9;;chr3:52001448..52001478,-!p2@PCBP4!0.54!44.03!PCBP4;;chr2:121493425..121493474,+!p1@GLI2!0.54!6.35!GLI2;;chr14:75894714..75894733,+!p1@JDP2!0.53!87.65!JDP2;;chr2:145275162..145275202,-!p2@ZEB2!0.53!17.53!ZEB2;;chr5:43067636..43067674,+!p6@ZNF131!0.53!3.53!ZNF131;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.53!2.62!GLIS1;;chr1:170632137..170632172,+!p10@PRRX1!0.53!2.42!PRRX1;;chr11:46316699..46316719,+!p10@CREB3L1!0.53!2.42!CREB3L1;;chr2:172967323..172967336,-!p4@DLX2!0.53!2.42!DLX2;;chr1:151032860..151032918,+!p1@MLLT11!0.52!35.16!MLLT11;;chr7:42276787..42276815,-!p1@GLI3!0.52!7.46!GLI3;;chr5:3595977..3595999,+!p1@IRX1!0.52!2.32!IRX1;;chr7:27212501..27212513,-!p5@HOXA10!0.52!2.32!HOXA10;;chrY:21906761..21906810,-!p2@KDM5D!0.52!2.32!KDM5D;;chr12:124873852..124873881,-!p3@NCOR2!0.51!17.33!NCOR2;;chr3:52001426..52001447,-!p3@PCBP4!0.51!7.66!PCBP4;;chr5:158526917..158526932,-!p1@EBF1!0.51!6.65!EBF1;;chr1:200379104..200379128,-!p2@ZNF281!0.51!6.55!ZNF281;;chr13:37494365..37494381,-!p1@SMAD9!0.51!4.43!SMAD9;;chr7:27192185..27192209,-!p1@HOXA3!0.51!2.22!HOXA3;;chr2:5832508..5832524,+!p1@SOX11!0.51!2.22!SOX11;;chr11:65667846..65667868,-!p1@FOSL1!0.50!75.56!FOSL1;;chr6:31126291..31126399,+!p1@TCF19!0.50!27.00!TCF19;;chr2:66662281..66662308,+!p1@MEIS1!0.50!9.37!MEIS1;;chr21:36421535..36421610,-!p2@RUNX1!0.49!9.37!RUNX1;;chr17:46621937..46621966,-!p2@HOXB2!0.49!6.95!HOXB2;;chr20:42543506..42543549,+!p2@TOX2!0.49!6.15!TOX2;;chr2:200323414..200323455,-!p1@SATB2!0.49!5.34!SATB2;;chr8:67525524..67525543,-!p3@MYBL1!0.49!3.93!MYBL1;;chr1:164528911..164528940,+!p7@PBX1!0.49!3.53!PBX1;;chr1:170632439..170632465,+!p11@PRRX1!0.49!2.12!PRRX1;;chr8:93115274..93115323,-!p4@RUNX1T1!0.49!2.12!RUNX1T1;;chr16:51185318..51185348,-!p2@SALL1!0.49!2.12!SALL1;;chr11:46333934..46333963,+!p5@CREB3L1!0.49!2.12!CREB3L1;;chr11:65686855..65686946,+!p1@DRAP1!0.48!205.64!DRAP1;;chr17:38256822..38256851,-!p1@NR1D1!0.48!21.36!NR1D1;;chr17:1958388..1958404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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 36: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3.CNhs11912.11559-120D2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3.CNhs11912.11559-120D2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3.CNhs11912.11559-120D2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3.CNhs11912.11559-120D2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3.CNhs11912.11559-120D2.hg38.nobarcode.ctss.bed.gz
|id=FF:11559-120D2
|id=FF:11559-120D2
|is_a=EFO:0002091;;FF:0000251
|is_a=EFO:0002091;;FF:0000251
|is_obsolete=
|is_obsolete=
|library_id=CNhs11912
|library_id_phase_based=2:CNhs11912
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11559
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11559
|name=Fibroblast - skin spinal muscular atrophy, donor3
|name=Fibroblast - skin spinal muscular atrophy, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 44: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11912,LSID842,release014,COMPLETED
|profile_hcage=CNhs11912,LSID842,release014,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 59: Line 79:
|rna_weight_ug=126.80145
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|sample_age=7 month old child
|sample_age=7 month old child
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
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|sample_cell_line=
Line 80: Line 101:
|top_motifs=NKX3-1:1.72081120194;GZF1:1.49948821603;HBP1_HMGB_SSRP1_UBTF:1.49783702121;SRF:1.30517503992;HSF1,2:1.29311691066;NR3C1:1.26235620153;PDX1:1.25220712509;HOX{A5,B5}:1.18984184197;XBP1:1.16898496326;EN1,2:1.14822918908;KLF4:1.13369745986;GCM1,2:1.08223836262;GFI1:1.05633969145;ALX4:0.988014240387;NFE2L1:0.984025511628;GFI1B:0.969605424755;NKX3-2:0.948899177194;TEAD1:0.937859438089;UFEwm:0.912998927488;MAFB:0.903907332748;SOX17:0.896573027438;EBF1:0.881426118463;POU3F1..4:0.866720012565;NKX2-2,8:0.85775507055;MYBL2:0.840445413269;HES1:0.82935575848;TP53:0.815330967873;PRDM1:0.814024650594;ZNF238:0.806413534118;MYB:0.782078211158;ESR1:0.781155320769;PPARG:0.769133522753;TFAP4:0.767122075912;PAX8:0.762902579618;NFIX:0.752095852788;HMX1:0.745775024705;HIF1A:0.723180200379;PRRX1,2:0.687142797336;TFDP1:0.684698015856;POU1F1:0.680957221253;NANOG{mouse}:0.672236674275;ZBTB6:0.659627217917;TAL1_TCF{3,4,12}:0.657338640263;GTF2I:0.655990017459;MZF1:0.651910103193;RXR{A,B,G}:0.638307903935;TFCP2:0.623286686192;GTF2A1,2:0.595715575045;HMGA1,2:0.589656447417;MAZ:0.583092797326;RXRA_VDR{dimer}:0.562704560709;TFAP2{A,C}:0.561782729266;CRX:0.53147462548;EVI1:0.53083184564;ELK1,4_GABP{A,B1}:0.525758268467;LEF1_TCF7_TCF7L1,2:0.520252414027;SMAD1..7,9:0.504209021139;ZNF384:0.49724361416;TBX4,5:0.487790612401;ATF6:0.463901141251;TLX1..3_NFIC{dimer}:0.46340226905;MTE{core}:0.4605169222;IKZF1:0.459957276258;NFATC1..3:0.45439015411;ZIC1..3:0.424971782416;YY1:0.418721579763;E2F1..5:0.409256380855;NRF1:0.404019581997;FOXD3:0.40066792557;GATA4:0.392940041143;NFE2L2:0.372022611815;FOXL1:0.312063194585;MEF2{A,B,C,D}:0.311717891906;STAT1,3:0.306369894183;ZNF148:0.305619467903;ZNF143:0.305116068995;HOX{A4,D4}:0.299739288088;BACH2:0.298796798115;POU5F1:0.295366432631;NR1H4:0.277440287032;CDC5L:0.27580326482;TBP:0.271335054536;XCPE1{core}:0.249051416518;EP300:0.248703444588;TFAP2B:0.244542345761;DMAP1_NCOR{1,2}_SMARC:0.226529262216;SPZ1:0.190375142238;T:0.18608247183;AHR_ARNT_ARNT2:0.174819767072;HLF:0.169471609672;NFY{A,B,C}:0.159412407077;ARID5B:0.149611775466;LHX3,4:0.145638492559;TEF:0.129172263269;HAND1,2:0.106977779257;PAX1,9:0.102494491546;PATZ1:0.0861637868515;NKX2-3_NKX2-5:0.0765485180519;NFE2:0.0497223318791;FOS_FOS{B,L1}_JUN{B,D}:0.0349329370187;JUN:0.033738769315;PAX5:0.013954135291;NKX6-1,2:-0.0220117318857;FOXM1:-0.0345109137548;TOPORS:-0.0432804211826;HIC1:-0.0433789782971;SOX2:-0.0449098494298;RUNX1..3:-0.0777100888846;FOSL2:-0.0842787322943;RREB1:-0.088135762934;GLI1..3:-0.0886692742073;RFX1:-0.095368754228;FOX{I1,J2}:-0.100891228675;HNF1A:-0.151495599511;ADNP_IRX_SIX_ZHX:-0.163587385045;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.168499804511;TGIF1:-0.171520076131;ELF1,2,4:-0.176118447947;AIRE:-0.1838735713;SOX5:-0.213013678654;NHLH1,2:-0.215500947651;PAX3,7:-0.216439615098;HOXA9_MEIS1:-0.216941578887;MED-1{core}:-0.260865901222;NANOG:-0.279565807897;MYFfamily:-0.296079710643;FOXO1,3,4:-0.313939916106;NR5A1,2:-0.315612124328;HNF4A_NR2F1,2:-0.316228220209;EGR1..3:-0.323346916623;CEBPA,B_DDIT3:-0.331175615323;BPTF:-0.331579950253;ZFP161:-0.332450266633;VSX1,2:-0.345709438053;NFIL3:-0.360574755953;SPI1:-0.370925688957;PAX4:-0.371078951545;OCT4_SOX2{dimer}:-0.395160838678;FOXA2:-0.398222245675;ETS1,2:-0.399580712619;SP1:-0.403506450322;NR6A1:-0.403911949117;POU6F1:-0.408094971497;REST:-0.422542949165;PAX2:-0.426746011103;MTF1:-0.434531267984;SPIB:-0.441921522888;STAT2,4,6:-0.444579564182;ONECUT1,2:-0.462346908805;IRF1,2:-0.464233295019;PBX1:-0.467801746795;CUX2:-0.473645944132;FOXN1:-0.47783669321;ESRRA:-0.487002119278;PAX6:-0.498580103196;CREB1:-0.498918556338;SOX{8,9,10}:-0.511503231549;NFKB1_REL_RELA:-0.541216174829;ZNF423:-0.558295562816;AR:-0.568036086583;ALX1:-0.591386460597;STAT5{A,B}:-0.600824831347;ATF5_CREB3:-0.609071854602;FOX{D1,D2}:-0.612190929651;NKX2-1,4:-0.625016102587;FOXP1:-0.662257626078;TLX2:-0.664905349878;DBP:-0.683897528393;HOX{A6,A7,B6,B7}:-0.683909192374;POU2F1..3:-0.696401636079;ATF4:-0.715548316392;BREu{core}:-0.73179128326;SNAI1..3:-0.732262586825;RFX2..5_RFXANK_RFXAP:-0.732331909207;bHLH_family:-0.741548621015;FOXP3:-0.750549555867;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.763786964309;FOXQ1:-0.770872770943;SREBF1,2:-0.781335157953;PITX1..3:-0.78669889628;GATA6:-0.841439430953;IRF7:-0.848370942999;ATF2:-0.849451704236;ZBTB16:-0.905886780207;RORA:-0.939220919533;ZEB1:-0.953635316194;FOX{F1,F2,J1}:-1.01221367054;RBPJ:-1.05651490772;IKZF2:-1.06214738977;LMO2:-1.14554714614;CDX1,2,4:-1.15501233188;MYOD1:-1.21301425828
|top_motifs=NKX3-1:1.72081120194;GZF1:1.49948821603;HBP1_HMGB_SSRP1_UBTF:1.49783702121;SRF:1.30517503992;HSF1,2:1.29311691066;NR3C1:1.26235620153;PDX1:1.25220712509;HOX{A5,B5}:1.18984184197;XBP1:1.16898496326;EN1,2:1.14822918908;KLF4:1.13369745986;GCM1,2:1.08223836262;GFI1:1.05633969145;ALX4:0.988014240387;NFE2L1:0.984025511628;GFI1B:0.969605424755;NKX3-2:0.948899177194;TEAD1:0.937859438089;UFEwm:0.912998927488;MAFB:0.903907332748;SOX17:0.896573027438;EBF1:0.881426118463;POU3F1..4:0.866720012565;NKX2-2,8:0.85775507055;MYBL2:0.840445413269;HES1:0.82935575848;TP53:0.815330967873;PRDM1:0.814024650594;ZNF238:0.806413534118;MYB:0.782078211158;ESR1:0.781155320769;PPARG:0.769133522753;TFAP4:0.767122075912;PAX8:0.762902579618;NFIX:0.752095852788;HMX1:0.745775024705;HIF1A:0.723180200379;PRRX1,2:0.687142797336;TFDP1:0.684698015856;POU1F1:0.680957221253;NANOG{mouse}:0.672236674275;ZBTB6:0.659627217917;TAL1_TCF{3,4,12}:0.657338640263;GTF2I:0.655990017459;MZF1:0.651910103193;RXR{A,B,G}:0.638307903935;TFCP2:0.623286686192;GTF2A1,2:0.595715575045;HMGA1,2:0.589656447417;MAZ:0.583092797326;RXRA_VDR{dimer}:0.562704560709;TFAP2{A,C}:0.561782729266;CRX:0.53147462548;EVI1:0.53083184564;ELK1,4_GABP{A,B1}:0.525758268467;LEF1_TCF7_TCF7L1,2:0.520252414027;SMAD1..7,9:0.504209021139;ZNF384:0.49724361416;TBX4,5:0.487790612401;ATF6:0.463901141251;TLX1..3_NFIC{dimer}:0.46340226905;MTE{core}:0.4605169222;IKZF1:0.459957276258;NFATC1..3:0.45439015411;ZIC1..3:0.424971782416;YY1:0.418721579763;E2F1..5:0.409256380855;NRF1:0.404019581997;FOXD3:0.40066792557;GATA4:0.392940041143;NFE2L2:0.372022611815;FOXL1:0.312063194585;MEF2{A,B,C,D}:0.311717891906;STAT1,3:0.306369894183;ZNF148:0.305619467903;ZNF143:0.305116068995;HOX{A4,D4}:0.299739288088;BACH2:0.298796798115;POU5F1:0.295366432631;NR1H4:0.277440287032;CDC5L:0.27580326482;TBP:0.271335054536;XCPE1{core}:0.249051416518;EP300:0.248703444588;TFAP2B:0.244542345761;DMAP1_NCOR{1,2}_SMARC:0.226529262216;SPZ1:0.190375142238;T:0.18608247183;AHR_ARNT_ARNT2:0.174819767072;HLF:0.169471609672;NFY{A,B,C}:0.159412407077;ARID5B:0.149611775466;LHX3,4:0.145638492559;TEF:0.129172263269;HAND1,2:0.106977779257;PAX1,9:0.102494491546;PATZ1:0.0861637868515;NKX2-3_NKX2-5:0.0765485180519;NFE2:0.0497223318791;FOS_FOS{B,L1}_JUN{B,D}:0.0349329370187;JUN:0.033738769315;PAX5:0.013954135291;NKX6-1,2:-0.0220117318857;FOXM1:-0.0345109137548;TOPORS:-0.0432804211826;HIC1:-0.0433789782971;SOX2:-0.0449098494298;RUNX1..3:-0.0777100888846;FOSL2:-0.0842787322943;RREB1:-0.088135762934;GLI1..3:-0.0886692742073;RFX1:-0.095368754228;FOX{I1,J2}:-0.100891228675;HNF1A:-0.151495599511;ADNP_IRX_SIX_ZHX:-0.163587385045;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.168499804511;TGIF1:-0.171520076131;ELF1,2,4:-0.176118447947;AIRE:-0.1838735713;SOX5:-0.213013678654;NHLH1,2:-0.215500947651;PAX3,7:-0.216439615098;HOXA9_MEIS1:-0.216941578887;MED-1{core}:-0.260865901222;NANOG:-0.279565807897;MYFfamily:-0.296079710643;FOXO1,3,4:-0.313939916106;NR5A1,2:-0.315612124328;HNF4A_NR2F1,2:-0.316228220209;EGR1..3:-0.323346916623;CEBPA,B_DDIT3:-0.331175615323;BPTF:-0.331579950253;ZFP161:-0.332450266633;VSX1,2:-0.345709438053;NFIL3:-0.360574755953;SPI1:-0.370925688957;PAX4:-0.371078951545;OCT4_SOX2{dimer}:-0.395160838678;FOXA2:-0.398222245675;ETS1,2:-0.399580712619;SP1:-0.403506450322;NR6A1:-0.403911949117;POU6F1:-0.408094971497;REST:-0.422542949165;PAX2:-0.426746011103;MTF1:-0.434531267984;SPIB:-0.441921522888;STAT2,4,6:-0.444579564182;ONECUT1,2:-0.462346908805;IRF1,2:-0.464233295019;PBX1:-0.467801746795;CUX2:-0.473645944132;FOXN1:-0.47783669321;ESRRA:-0.487002119278;PAX6:-0.498580103196;CREB1:-0.498918556338;SOX{8,9,10}:-0.511503231549;NFKB1_REL_RELA:-0.541216174829;ZNF423:-0.558295562816;AR:-0.568036086583;ALX1:-0.591386460597;STAT5{A,B}:-0.600824831347;ATF5_CREB3:-0.609071854602;FOX{D1,D2}:-0.612190929651;NKX2-1,4:-0.625016102587;FOXP1:-0.662257626078;TLX2:-0.664905349878;DBP:-0.683897528393;HOX{A6,A7,B6,B7}:-0.683909192374;POU2F1..3:-0.696401636079;ATF4:-0.715548316392;BREu{core}:-0.73179128326;SNAI1..3:-0.732262586825;RFX2..5_RFXANK_RFXAP:-0.732331909207;bHLH_family:-0.741548621015;FOXP3:-0.750549555867;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.763786964309;FOXQ1:-0.770872770943;SREBF1,2:-0.781335157953;PITX1..3:-0.78669889628;GATA6:-0.841439430953;IRF7:-0.848370942999;ATF2:-0.849451704236;ZBTB16:-0.905886780207;RORA:-0.939220919533;ZEB1:-0.953635316194;FOX{F1,F2,J1}:-1.01221367054;RBPJ:-1.05651490772;IKZF2:-1.06214738977;LMO2:-1.14554714614;CDX1,2,4:-1.15501233188;MYOD1:-1.21301425828
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11559-120D2;search_select_hide=table117:FF:11559-120D2
}}
}}

Latest revision as of 18:09, 4 June 2020

Name:Fibroblast - skin spinal muscular atrophy, donor3
Species:Human (Homo sapiens)
Library ID:CNhs11912
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexM
age7 month old child
cell typefibroblast
cell lineNA
companyCoriell
collaborationSplicing (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005567
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11912 CAGE DRX008291 DRR009163
Accession ID Hg19

Library idBAMCTSS
CNhs11912 DRZ000588 DRZ001973
Accession ID Hg38

Library idBAMCTSS
CNhs11912 DRZ011938 DRZ013323
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0952
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.346
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.433
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0839
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.284
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0417
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.301
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.231
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.309
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.433
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0842
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.00337
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.147
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.232
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0332
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.15
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.115
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0417
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.344
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0797
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.788
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.382
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.433
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.4
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11912

Jaspar motifP-value
MA0002.20.409
MA0003.10.994
MA0004.16.72758e-4
MA0006.10.0747
MA0007.10.306
MA0009.10.314
MA0014.10.612
MA0017.10.0912
MA0018.25.45172e-5
MA0019.10.0863
MA0024.10.517
MA0025.10.0289
MA0027.10.9
MA0028.10.266
MA0029.10.332
MA0030.10.0736
MA0031.10.1
MA0035.20.0128
MA0038.10.298
MA0039.20.0669
MA0040.10.418
MA0041.10.64
MA0042.10.965
MA0043.13.09981e-5
MA0046.10.742
MA0047.20.231
MA0048.10.00239
MA0050.14.31937e-7
MA0051.10.00102
MA0052.10.186
MA0055.10.081
MA0057.10.425
MA0058.13.40705e-4
MA0059.10.0913
MA0060.10.891
MA0061.10.00628
MA0062.20.163
MA0065.20.0326
MA0066.10.467
MA0067.10.0388
MA0068.10.873
MA0069.10.0329
MA0070.10.751
MA0071.10.622
MA0072.10.736
MA0073.10.884
MA0074.10.805
MA0076.10.271
MA0077.10.638
MA0078.10.307
MA0079.20.766
MA0080.26.77635e-9
MA0081.10.00554
MA0083.10.00183
MA0084.10.398
MA0087.10.669
MA0088.10.444
MA0090.11.11241e-4
MA0091.10.82
MA0092.10.358
MA0093.10.00487
MA0099.20.143
MA0100.10.223
MA0101.17.38076e-6
MA0102.20.0048
MA0103.13.10238e-6
MA0104.23.71921e-5
MA0105.10.399
MA0106.10.0226
MA0107.19.41817e-6
MA0108.20.0839
MA0111.10.228
MA0112.20.247
MA0113.10.977
MA0114.10.0144
MA0115.10.155
MA0116.10.853
MA0117.10.622
MA0119.10.799
MA0122.10.448
MA0124.10.568
MA0125.10.696
MA0131.10.748
MA0135.10.991
MA0136.17.0904e-6
MA0137.20.283
MA0138.20.476
MA0139.10.487
MA0140.10.0986
MA0141.10.166
MA0142.10.112
MA0143.10.786
MA0144.10.299
MA0145.10.492
MA0146.10.494
MA0147.10.00109
MA0148.10.313
MA0149.10.758
MA0150.10.159
MA0152.10.136
MA0153.10.899
MA0154.10.994
MA0155.10.715
MA0156.10.0174
MA0157.10.328
MA0159.10.596
MA0160.10.0235
MA0162.10.0532
MA0163.10.152
MA0164.10.74
MA0258.10.297
MA0259.10.275



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11912

Novel motifP-value
10.431
100.857
1000.58
1010.292
1020.171
1030.626
1040.953
1050.684
1060.119
1070.986
1080.826
1090.698
110.696
1100.663
1110.507
1120.949
1130.00199
1140.907
1150.435
1160.28
1170.391
1180.637
1190.192
120.776
1200.638
1210.591
1220.217
1233.90308e-5
1240.316
1250.413
1260.405
1270.828
1280.292
1290.506
130.689
1300.0504
1310.506
1320.68
1330.496
1340.208
1350.543
1360.16
1370.915
1380.259
1390.0331
140.248
1400.145
1410.038
1420.676
1430.917
1440.559
1450.755
1460.949
1470.264
1480.0209
1490.0346
150.465
1500.502
1510.33
1520.146
1530.614
1540.412
1550.00956
1560.659
1570.149
1580.00251
1590.171
160.487
1600.851
1610.0656
1620.726
1630.344
1640.341
1650.16
1660.0607
1670.496
1680.31
1690.226
170.966
180.239
190.0258
20.403
200.354
210.137
220.431
230.975
240.985
250.604
260.897
270.942
280.522
290.759
30.805
300.227
310.964
327.88631e-6
330.353
340.968
350.386
360.0722
370.43
380.56
390.401
40.802
400.26
410.465
420.729
430.652
440.985
450.9
460.856
470.72
480.645
490.105
50.699
500.725
510.615
520.709
530.259
540.981
550.382
560.749
570.514
580.202
590.294
60.575
600.296
610.265
620.456
630.719
640.554
650.861
660.431
670.623
680.712
690.762
70.131
700.139
710.959
720.227
730.138
740.105
750.556
760.457
770.0656
780.233
790.17
80.993
800.596
810.49
820.922
830.2
840.278
850.685
860.4
870.188
880.741
890.36
90.83
900.685
910.771
920.805
930.32
940.974
950.944
960.922
970.581
980.154
990.0669



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11912


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000251 (human fibroblast - skin spinal muscular atrophy sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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