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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005514
|accession_numbers=CAGE;DRX008617;DRR009489;DRZ000914;DRZ002299;DRZ012264;DRZ013649
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001871,UBERON:0001876,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950,UBERON:0000349,UBERON:0010011,UBERON:0000454
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001871,UBERON:0001876,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950,UBERON:0000349,UBERON:0010011,UBERON:0000454
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.44!277.37!HOPX;;chr21:34442439..34442455,+!p1@OLIG1!2.35!222.69!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.25!176.96!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.22!165.03!PEG3;;chr15:80733570..80733659,+!p2@ARNT2!2.10!124.27!ARNT2;;chr9:114287433..114287513,+!p1@ZNF483!2.09!302.22!ZNF483;;chr2:2334997..2335053,-!p1@MYT1L!1.94!86.49!MYT1L;;chr17:53342311..53342400,+!p1@HLF!1.89!87.48!HLF;;chr3:181429704..181429722,+!p1@SOX2!1.88!74.56!SOX2;;chr14:29235961..29236008,+!p1@FOXG1!1.85!70.58!FOXG1;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.80!62.63!SMARCE1;;chr22:38380543..38380569,-!p1@SOX10!1.78!58.65!SOX10;;chr5:88178983..88179012,-!p1@MEF2C!1.77!425.50!MEF2C;;chrX:85969626..85969664,+!p1@DACH2!1.75!54.68!DACH2;;chr21:34442540..34442560,+!p2@OLIG1!1.74!53.68!OLIG1;;chr4:81118647..81118666,+!p1@PRDM8!1.72!67.60!PRDM8;;chr10:48355030..48355090,+!p1@ZNF488!1.71!64.62!ZNF488;;chr2:162272785..162272836,+!p1@TBR1!1.71!50.70!TBR1;;chr17:37764128..37764258,-!p1@NEUROD2!1.71!49.71!NEUROD2;;chrX:25034067..25034088,-!p1@ARX!1.70!48.71!ARX;;chr2:95963052..95963106,+!p1@KCNIP3!1.67!45.73!KCNIP3;;chr12:106976774..106976788,+!p1@RFX4!1.64!42.75!RFX4;;chr7:31380292..31380351,-!p1@NEUROD6!1.64!42.75!NEUROD6;;chr11:61520075..61520136,+!p1@C11orf9!1.63!85.50!C11orf9;;chr2:166326200..166326216,+!p1@CSRNP3!1.62!58.65!CSRNP3;;chr15:80735246..80735321,+!p3@ARNT2!1.60!38.77!ARNT2;;chr12:106976678..106976708,+!p2@RFX4!1.59!37.78!RFX4;;chr10:119302232..119302265,+!p1@EMX2!1.58!36.78!EMX2;;chr21:34398234..34398250,+!p1@OLIG2!1.57!35.79!OLIG2;;chr19:46801639..46801699,+!p1@HIF3A!1.54!33.80!HIF3A;;chr10:64134120..64134183,+!p1@ZNF365!1.53!39.77!ZNF365;;chr19:57352109..57352153,-!p2@ZIM2!1.53!32.81!ZIM2;;chr18:53070846..53070902,-!p6@TCF4!1.53!32.81!TCF4;;chr9:126774018..126774055,+!p1@LHX2!1.53!32.81!LHX2;;chr9:126773880..126773895,+!p2@LHX2!1.53!32.81!LHX2;;chr2:95963120..95963136,+!p2@KCNIP3!1.53!32.81!KCNIP3;;chr7:63505799..63505904,+!p1@ZNF727!1.52!31.81!ZNF727;;chr2:60781201..60781258,-!p3@BCL11A!1.50!30.82!BCL11A;;chr5:88179017..88179046,-!p2@MEF2C!1.48!114.33!MEF2C;;chr11:8102846..8102892,+!p1@TUB!1.47!39.77!TUB;;chr3:181429741..181429767,+!p2@SOX2!1.47!28.83!SOX2;;chr19:46800289..46800327,+!p2@HIF3A!1.44!26.84!HIF3A;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.43!25.85!POU3F3;;chr14:29236269..29236285,+!p3@FOXG1!1.43!25.85!FOXG1;;chr14:58798013..58798071,+!p2@ARID4A!1.43!25.85!ARID4A;;chr1:151032860..151032918,+!p1@MLLT11!1.41!283.33!MLLT11;;chr12:26277817..26277863,-!p2@BHLHE41!1.41!32.81!BHLHE41;;chr9:77112244..77112262,+!p1@RORB!1.41!27.84!RORB;;chr14:29234581..29234601,+!p2@FOXG1!1.40!23.86!FOXG1;;chr14:33403881..33403924,+!p1@NPAS3!1.38!22.87!NPAS3;;chr8:40755333..40755352,-!p1@ZMAT4!1.38!22.87!ZMAT4;;chr15:80696703..80696754,+!p1@ARNT2!1.36!28.83!ARNT2;;chr2:145277882..145277967,-!p3@ZEB2!1.35!36.78!ZEB2;;chr19:13135582..13135600,+!p3@NFIX!1.34!20.88!NFIX;;chr3:141105705..141105770,+!p4@ZBTB38!1.32!23.86!ZBTB38;;chr4:57522166..57522260,-!p2@HOPX!1.32!22.87!HOPX;;chr10:64133862..64133884,+!p4@ZNF365!1.32!19.88!ZNF365;;chr1:244214577..244214593,+!p1@ZNF238!1.32!19.88!ZNF238;;chr3:126076242..126076257,-!p1@KLF15!1.29!22.87!KLF15;;chr17:70117153..70117174,+!p1@SOX9!1.28!179.94!SOX9;;chr19:38085768..38085821,+!p1@ZNF540!1.28!26.84!ZNF540;;chr8:53322304..53322340,-!p1@ST18!1.28!17.89!ST18;;chr1:214161272..214161322,+!p1@PROX1!1.26!23.86!PROX1;;chr11:125034640..125034655,+!p1@PKNOX2!1.25!16.90!PKNOX2;;chr16:1031762..1031781,+!p1@SOX8!1.23!15.91!SOX8;;chr9:126774058..126774081,+!p3@LHX2!1.23!15.91!LHX2;;chrX:118739782..118739829,-!p2@NKRF!1.23!15.91!NKRF;;chr3:24536253..24536328,-!p1@THRB!1.20!27.84!THRB;;chr6:19837592..19837621,+!p1@ID4!1.19!88.48!ID4;;chr12:26277956..26277980,-!p1@BHLHE41!1.19!51.70!BHLHE41;;chr11:113930425..113930471,+!p1@ZBTB16!1.19!20.88!ZBTB16;;chr17:7492684..7492778,-!p2@SOX15!1.18!29.82!SOX15;;chr2:73520667..73520683,-!p1@EGR4!1.17!13.92!EGR4;;chr4:57522598..57522664,-!p3@HOPX!1.17!13.92!HOPX;;chr11:31832658..31832681,-!p1@PAX6!1.17!13.92!PAX6;;chr12:103352277..103352324,+!p2@ASCL1!1.17!13.92!ASCL1;;chr1:151032922..151032951,+!p2@MLLT11!1.15!21.87!MLLT11;;chr19:38720294..38720348,-!p1@DPF1!1.14!15.91!DPF1;;chr14:58797974..58798011,+!p3@ARID4A!1.14!12.92!ARID4A;;chr22:41763452..41763466,+!p2@TEF!1.14!12.92!TEF;;chr9:2159850..2159880,+!p14@SMARCA2!1.14!12.92!SMARCA2;;chr19:58545454..58545498,+!p1@ZSCAN1!1.11!11.93!ZSCAN1;;chr19:13135386..13135435,+!p4@NFIX!1.11!11.93!NFIX;;chr11:31832862..31832884,-!p2@PAX6!1.11!11.93!PAX6;;chr12:103351444..103351461,+!p1@ASCL1!1.11!11.93!ASCL1;;chr19:13134772..13134822,+!p2@NFIX!1.09!16.90!NFIX;;chr20:62680984..62680999,-!p1@SOX18!1.09!14.91!SOX18;;chr1:61548069..61548102,+!p3@NFIA!1.08!26.84!NFIA;;chr5:88179230..88179270,-!p4@MEF2C!1.08!21.87!MEF2C;;chr8:93107451..93107468,-!p2@RUNX1T1!1.08!10.94!RUNX1T1;;chr14:29234870..29234930,+!p7@FOXG1!1.08!10.94!FOXG1;;chr14:29237009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|expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.44!277.37!HOPX;;chr21:34442439..34442455,+!p1@OLIG1!2.35!222.69!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.25!176.96!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.22!165.03!PEG3;;chr15:80733570..80733659,+!p2@ARNT2!2.10!124.27!ARNT2;;chr9:114287433..114287513,+!p1@ZNF483!2.09!302.22!ZNF483;;chr2:2334997..2335053,-!p1@MYT1L!1.94!86.49!MYT1L;;chr17:53342311..53342400,+!p1@HLF!1.89!87.48!HLF;;chr3:181429704..181429722,+!p1@SOX2!1.88!74.56!SOX2;;chr14:29235961..29236008,+!p1@FOXG1!1.85!70.58!FOXG1;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.80!62.63!SMARCE1;;chr22:38380543..38380569,-!p1@SOX10!1.78!58.65!SOX10;;chr5:88178983..88179012,-!p1@MEF2C!1.77!425.50!MEF2C;;chrX:85969626..85969664,+!p1@DACH2!1.75!54.68!DACH2;;chr21:34442540..34442560,+!p2@OLIG1!1.74!53.68!OLIG1;;chr4:81118647..81118666,+!p1@PRDM8!1.72!67.60!PRDM8;;chr10:48355030..48355090,+!p1@ZNF488!1.71!64.62!ZNF488;;chr2:162272785..162272836,+!p1@TBR1!1.71!50.70!TBR1;;chr17:37764128..37764258,-!p1@NEUROD2!1.71!49.71!NEUROD2;;chrX:25034067..25034088,-!p1@ARX!1.70!48.71!ARX;;chr2:95963052..95963106,+!p1@KCNIP3!1.67!45.73!KCNIP3;;chr12:106976774..106976788,+!p1@RFX4!1.64!42.75!RFX4;;chr7:31380292..31380351,-!p1@NEUROD6!1.64!42.75!NEUROD6;;chr11:61520075..61520136,+!p1@C11orf9!1.63!85.50!C11orf9;;chr2:166326200..166326216,+!p1@CSRNP3!1.62!58.65!CSRNP3;;chr15:80735246..80735321,+!p3@ARNT2!1.60!38.77!ARNT2;;chr12:106976678..106976708,+!p2@RFX4!1.59!37.78!RFX4;;chr10:119302232..119302265,+!p1@EMX2!1.58!36.78!EMX2;;chr21:34398234..34398250,+!p1@OLIG2!1.57!35.79!OLIG2;;chr19:46801639..46801699,+!p1@HIF3A!1.54!33.80!HIF3A;;chr10:64134120..64134183,+!p1@ZNF365!1.53!39.77!ZNF365;;chr19:57352109..57352153,-!p2@ZIM2!1.53!32.81!ZIM2;;chr18:53070846..53070902,-!p6@TCF4!1.53!32.81!TCF4;;chr9:126774018..126774055,+!p1@LHX2!1.53!32.81!LHX2;;chr9:126773880..126773895,+!p2@LHX2!1.53!32.81!LHX2;;chr2:95963120..95963136,+!p2@KCNIP3!1.53!32.81!KCNIP3;;chr7:63505799..63505904,+!p1@ZNF727!1.52!31.81!ZNF727;;chr2:60781201..60781258,-!p3@BCL11A!1.50!30.82!BCL11A;;chr5:88179017..88179046,-!p2@MEF2C!1.48!114.33!MEF2C;;chr11:8102846..8102892,+!p1@TUB!1.47!39.77!TUB;;chr3:181429741..181429767,+!p2@SOX2!1.47!28.83!SOX2;;chr19:46800289..46800327,+!p2@HIF3A!1.44!26.84!HIF3A;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.43!25.85!POU3F3;;chr14:29236269..29236285,+!p3@FOXG1!1.43!25.85!FOXG1;;chr14:58798013..58798071,+!p2@ARID4A!1.43!25.85!ARID4A;;chr1:151032860..151032918,+!p1@MLLT11!1.41!283.33!MLLT11;;chr12:26277817..26277863,-!p2@BHLHE41!1.41!32.81!BHLHE41;;chr9:77112244..77112262,+!p1@RORB!1.41!27.84!RORB;;chr14:29234581..29234601,+!p2@FOXG1!1.40!23.86!FOXG1;;chr14:33403881..33403924,+!p1@NPAS3!1.38!22.87!NPAS3;;chr8:40755333..40755352,-!p1@ZMAT4!1.38!22.87!ZMAT4;;chr15:80696703..80696754,+!p1@ARNT2!1.36!28.83!ARNT2;;chr2:145277882..145277967,-!p3@ZEB2!1.35!36.78!ZEB2;;chr19:13135582..13135600,+!p3@NFIX!1.34!20.88!NFIX;;chr3:141105705..141105770,+!p4@ZBTB38!1.32!23.86!ZBTB38;;chr4:57522166..57522260,-!p2@HOPX!1.32!22.87!HOPX;;chr10:64133862..64133884,+!p4@ZNF365!1.32!19.88!ZNF365;;chr1:244214577..244214593,+!p1@ZNF238!1.32!19.88!ZNF238;;chr3:126076242..126076257,-!p1@KLF15!1.29!22.87!KLF15;;chr17:70117153..70117174,+!p1@SOX9!1.28!179.94!SOX9;;chr19:38085768..38085821,+!p1@ZNF540!1.28!26.84!ZNF540;;chr8:53322304..53322340,-!p1@ST18!1.28!17.89!ST18;;chr1:214161272..214161322,+!p1@PROX1!1.26!23.86!PROX1;;chr11:125034640..125034655,+!p1@PKNOX2!1.25!16.90!PKNOX2;;chr16:1031762..1031781,+!p1@SOX8!1.23!15.91!SOX8;;chr9:126774058..126774081,+!p3@LHX2!1.23!15.91!LHX2;;chrX:118739782..118739829,-!p2@NKRF!1.23!15.91!NKRF;;chr3:24536253..24536328,-!p1@THRB!1.20!27.84!THRB;;chr6:19837592..19837621,+!p1@ID4!1.19!88.48!ID4;;chr12:26277956..26277980,-!p1@BHLHE41!1.19!51.70!BHLHE41;;chr11:113930425..113930471,+!p1@ZBTB16!1.19!20.88!ZBTB16;;chr17:7492684..7492778,-!p2@SOX15!1.18!29.82!SOX15;;chr2:73520667..73520683,-!p1@EGR4!1.17!13.92!EGR4;;chr4:57522598..57522664,-!p3@HOPX!1.17!13.92!HOPX;;chr11:31832658..31832681,-!p1@PAX6!1.17!13.92!PAX6;;chr12:103352277..103352324,+!p2@ASCL1!1.17!13.92!ASCL1;;chr1:151032922..151032951,+!p2@MLLT11!1.15!21.87!MLLT11;;chr19:38720294..38720348,-!p1@DPF1!1.14!15.91!DPF1;;chr14:58797974..58798011,+!p3@ARID4A!1.14!12.92!ARID4A;;chr22:41763452..41763466,+!p2@TEF!1.14!12.92!TEF;;chr9:2159850..2159880,+!p14@SMARCA2!1.14!12.92!SMARCA2;;chr19:58545454..58545498,+!p1@ZSCAN1!1.11!11.93!ZSCAN1;;chr19:13135386..13135435,+!p4@NFIX!1.11!11.93!NFIX;;chr11:31832862..31832884,-!p2@PAX6!1.11!11.93!PAX6;;chr12:103351444..103351461,+!p1@ASCL1!1.11!11.93!ASCL1;;chr19:13134772..13134822,+!p2@NFIX!1.09!16.90!NFIX;;chr20:62680984..62680999,-!p1@SOX18!1.09!14.91!SOX18;;chr1:61548069..61548102,+!p3@NFIA!1.08!26.84!NFIA;;chr5:88179230..88179270,-!p4@MEF2C!1.08!21.87!MEF2C;;chr8:93107451..93107468,-!p2@RUNX1T1!1.08!10.94!RUNX1T1;;chr14:29234870..29234930,+!p7@FOXG1!1.08!10.94!FOXG1;;chr14:29237009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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000454;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001871;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/amygdala%2520-%2520adult%252c%2520donor10196.CNhs13793.10167-103B5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/amygdala%2520-%2520adult%252c%2520donor10196.CNhs13793.10167-103B5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/amygdala%2520-%2520adult%252c%2520donor10196.CNhs13793.10167-103B5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/amygdala%2520-%2520adult%252c%2520donor10196.CNhs13793.10167-103B5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/amygdala%2520-%2520adult%252c%2520donor10196.CNhs13793.10167-103B5.hg38.nobarcode.ctss.bed.gz
|id=FF:10167-103B5
|id=FF:10167-103B5
|is_a=EFO:0002091;;FF:0010151
|is_a=EFO:0002091;;FF:0010151
|is_obsolete=
|is_obsolete=
|library_id=CNhs13793
|library_id_phase_based=2:CNhs13793
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10167
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10167
|name=amygdala - adult, donor10196
|name=amygdala - adult, donor10196
|namespace=FANTOM5
|namespace=FANTOM5
Line 48: Line 63:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=
|profile_srnaseq=
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Line 61: Line 79:
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|sample_cell_line=
Line 82: Line 101:
|top_motifs=HOXA9_MEIS1:3.75316446268;REST:3.59473352349;CUX2:3.51743377964;PRRX1,2:3.43748627379;DBP:3.38293404536;AHR_ARNT_ARNT2:3.37472538219;RFX1:3.18277017381;ATF2:3.09995605042;MTE{core}:3.04829659614;ZBTB6:3.03481221844;NHLH1,2:3.01390678698;FOXM1:2.89198837453;OCT4_SOX2{dimer}:2.88345831949;ZFP161:2.87788160493;MED-1{core}:2.87452525718;MYFfamily:2.84335695011;RREB1:2.75132941604;MTF1:2.72342865591;RFX2..5_RFXANK_RFXAP:2.72286273783;POU6F1:2.57005902889;NKX3-2:2.54586691562;PRDM1:2.43914636694;HOX{A4,D4}:2.41218051362;NKX2-3_NKX2-5:2.30505627348;GATA4:2.29079774948;PAX6:2.27967971284;EGR1..3:2.24326902138;NFIX:2.1794317346;GTF2I:2.16308546664;SMAD1..7,9:2.15268747587;KLF4:2.11721667188;NANOG:2.04827576865;PAX4:2.02466954939;MZF1:2.00420477813;HBP1_HMGB_SSRP1_UBTF:1.9448071446;JUN:1.91982302346;TEF:1.87881963172;GFI1B:1.87309609314;PAX5:1.79089729879;HAND1,2:1.73812807164;MAFB:1.72203973194;CDC5L:1.70372652141;SOX2:1.70214315012;POU5F1:1.68154258312;ALX1:1.65278708856;LMO2:1.64858207982;SOX17:1.62977859536;BREu{core}:1.59710320071;TGIF1:1.57990957333;NRF1:1.56753741764;TFAP2B:1.55608992192;GCM1,2:1.52900893919;HIC1:1.50420466562;PATZ1:1.50001390631;POU1F1:1.47793171572;ESRRA:1.43411093615;RBPJ:1.3916385219;SOX5:1.38038293207;LEF1_TCF7_TCF7L1,2:1.37686887661;MAZ:1.37186582769;ARID5B:1.35059559238;NKX6-1,2:1.26216994261;IKZF2:1.16491648015;FOXP3:1.14593580963;MYOD1:1.11425580622;FOX{F1,F2,J1}:1.06947574644;TLX2:1.02846432135;ZNF384:0.997925061183;ZIC1..3:0.986247358961;SOX{8,9,10}:0.962283274212;POU3F1..4:0.889968421649;TFDP1:0.876636914697;ADNP_IRX_SIX_ZHX:0.871689139213;HMGA1,2:0.846344530987;ONECUT1,2:0.828366756674;XBP1:0.774236274392;IKZF1:0.762845448279;ZNF423:0.758360109225;FOXP1:0.754947796974;CREB1:0.754668539083;STAT1,3:0.738646037741;PDX1:0.732848155696;NFIL3:0.709167233625;GZF1:0.680193776319;SREBF1,2:0.622892803969;MEF2{A,B,C,D}:0.601385510682;BPTF:0.592149564612;ZEB1:0.563723654582;ZBTB16:0.542054062548;ZNF238:0.500970260541;NR3C1:0.491993020651;GTF2A1,2:0.487936699369;SPZ1:0.47727236812;UFEwm:0.468326940309;ATF5_CREB3:0.440551180682;FOXN1:0.40306981445;LHX3,4:0.403014199852;ZNF143:0.391740019983;TLX1..3_NFIC{dimer}:0.361846935166;EBF1:0.341760319631;HMX1:0.334432947321;STAT2,4,6:0.291660599527;MYBL2:0.271827900332;T:0.267748441734;NKX3-1:0.255839550987;PAX1,9:0.248523306989;RORA:0.248217288296;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.21869636635;TBX4,5:0.214785739831;YY1:0.200693723692;HSF1,2:0.155946607917;PBX1:0.150047496099;PAX2:0.120288919912;FOXA2:0.117572066613;HOX{A6,A7,B6,B7}:0.107584172614;SP1:0.0995832949824;AIRE:0.0757951834068;CDX1,2,4:0.0757632047133;EP300:0.0705797723001;PAX3,7:0.0363724817797;FOX{D1,D2}:0.0150494286643;NANOG{mouse}:0.00753985776367;GFI1:-0.0239021812285;bHLH_family:-0.0288421815414;AR:-0.03612679648;EVI1:-0.0697519183869;IRF7:-0.102237935781;TOPORS:-0.130708964553;VSX1,2:-0.139344244888;ATF4:-0.143891140337;TFAP2{A,C}:-0.173933038414;NFE2L1:-0.204047970165;FOXL1:-0.220323073722;FOXQ1:-0.243945585133;SNAI1..3:-0.252399563059;PAX8:-0.265271300651;ATF6:-0.278532858497;FOXD3:-0.294864276143;DMAP1_NCOR{1,2}_SMARC:-0.328042035608;CRX:-0.36966046745;IRF1,2:-0.43555145868;CEBPA,B_DDIT3:-0.444771649671;GATA6:-0.463115081946;SPI1:-0.466907505145;NFY{A,B,C}:-0.469459802114;NFE2L2:-0.489437548149;NFE2:-0.513275624595;TAL1_TCF{3,4,12}:-0.577863719424;SPIB:-0.594392859929;PITX1..3:-0.602271253803;TBP:-0.625003204082;HNF1A:-0.644002123229;GLI1..3:-0.696454075123;RXRA_VDR{dimer}:-0.700486074502;BACH2:-0.740947413542;FOSL2:-0.750185940252;HNF4A_NR2F1,2:-0.824575487597;NFATC1..3:-0.835831737926;TP53:-0.842948475459;TFAP4:-0.880263768931;FOXO1,3,4:-0.918219233237;HES1:-0.928346266262;TFCP2:-0.929557601815;FOS_FOS{B,L1}_JUN{B,D}:-0.945121747584;XCPE1{core}:-0.974672798484;ETS1,2:-0.986182682394;TEAD1:-1.01878530661;RUNX1..3:-1.03580472682;HIF1A:-1.05672166121;HLF:-1.11148550406;FOX{I1,J2}:-1.14719747407;NR5A1,2:-1.14817775093;MYB:-1.18059595208;NFKB1_REL_RELA:-1.26911692357;ALX4:-1.29104237639;E2F1..5:-1.29942392623;ZNF148:-1.36868190414;NR1H4:-1.38615834399;SRF:-1.38761779864;PPARG:-1.50117026619;ELF1,2,4:-1.57477201357;ELK1,4_GABP{A,B1}:-1.62587535427;POU2F1..3:-1.7480981536;NKX2-2,8:-1.76973338656;RXR{A,B,G}:-1.77334956786;STAT5{A,B}:-2.06184802499;EN1,2:-2.11233457982;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.18983371557;HOX{A5,B5}:-2.24034241046;ESR1:-2.42797898259;NKX2-1,4:-2.69107152043;NR6A1:-2.72939123173
|top_motifs=HOXA9_MEIS1:3.75316446268;REST:3.59473352349;CUX2:3.51743377964;PRRX1,2:3.43748627379;DBP:3.38293404536;AHR_ARNT_ARNT2:3.37472538219;RFX1:3.18277017381;ATF2:3.09995605042;MTE{core}:3.04829659614;ZBTB6:3.03481221844;NHLH1,2:3.01390678698;FOXM1:2.89198837453;OCT4_SOX2{dimer}:2.88345831949;ZFP161:2.87788160493;MED-1{core}:2.87452525718;MYFfamily:2.84335695011;RREB1:2.75132941604;MTF1:2.72342865591;RFX2..5_RFXANK_RFXAP:2.72286273783;POU6F1:2.57005902889;NKX3-2:2.54586691562;PRDM1:2.43914636694;HOX{A4,D4}:2.41218051362;NKX2-3_NKX2-5:2.30505627348;GATA4:2.29079774948;PAX6:2.27967971284;EGR1..3:2.24326902138;NFIX:2.1794317346;GTF2I:2.16308546664;SMAD1..7,9:2.15268747587;KLF4:2.11721667188;NANOG:2.04827576865;PAX4:2.02466954939;MZF1:2.00420477813;HBP1_HMGB_SSRP1_UBTF:1.9448071446;JUN:1.91982302346;TEF:1.87881963172;GFI1B:1.87309609314;PAX5:1.79089729879;HAND1,2:1.73812807164;MAFB:1.72203973194;CDC5L:1.70372652141;SOX2:1.70214315012;POU5F1:1.68154258312;ALX1:1.65278708856;LMO2:1.64858207982;SOX17:1.62977859536;BREu{core}:1.59710320071;TGIF1:1.57990957333;NRF1:1.56753741764;TFAP2B:1.55608992192;GCM1,2:1.52900893919;HIC1:1.50420466562;PATZ1:1.50001390631;POU1F1:1.47793171572;ESRRA:1.43411093615;RBPJ:1.3916385219;SOX5:1.38038293207;LEF1_TCF7_TCF7L1,2:1.37686887661;MAZ:1.37186582769;ARID5B:1.35059559238;NKX6-1,2:1.26216994261;IKZF2:1.16491648015;FOXP3:1.14593580963;MYOD1:1.11425580622;FOX{F1,F2,J1}:1.06947574644;TLX2:1.02846432135;ZNF384:0.997925061183;ZIC1..3:0.986247358961;SOX{8,9,10}:0.962283274212;POU3F1..4:0.889968421649;TFDP1:0.876636914697;ADNP_IRX_SIX_ZHX:0.871689139213;HMGA1,2:0.846344530987;ONECUT1,2:0.828366756674;XBP1:0.774236274392;IKZF1:0.762845448279;ZNF423:0.758360109225;FOXP1:0.754947796974;CREB1:0.754668539083;STAT1,3:0.738646037741;PDX1:0.732848155696;NFIL3:0.709167233625;GZF1:0.680193776319;SREBF1,2:0.622892803969;MEF2{A,B,C,D}:0.601385510682;BPTF:0.592149564612;ZEB1:0.563723654582;ZBTB16:0.542054062548;ZNF238:0.500970260541;NR3C1:0.491993020651;GTF2A1,2:0.487936699369;SPZ1:0.47727236812;UFEwm:0.468326940309;ATF5_CREB3:0.440551180682;FOXN1:0.40306981445;LHX3,4:0.403014199852;ZNF143:0.391740019983;TLX1..3_NFIC{dimer}:0.361846935166;EBF1:0.341760319631;HMX1:0.334432947321;STAT2,4,6:0.291660599527;MYBL2:0.271827900332;T:0.267748441734;NKX3-1:0.255839550987;PAX1,9:0.248523306989;RORA:0.248217288296;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.21869636635;TBX4,5:0.214785739831;YY1:0.200693723692;HSF1,2:0.155946607917;PBX1:0.150047496099;PAX2:0.120288919912;FOXA2:0.117572066613;HOX{A6,A7,B6,B7}:0.107584172614;SP1:0.0995832949824;AIRE:0.0757951834068;CDX1,2,4:0.0757632047133;EP300:0.0705797723001;PAX3,7:0.0363724817797;FOX{D1,D2}:0.0150494286643;NANOG{mouse}:0.00753985776367;GFI1:-0.0239021812285;bHLH_family:-0.0288421815414;AR:-0.03612679648;EVI1:-0.0697519183869;IRF7:-0.102237935781;TOPORS:-0.130708964553;VSX1,2:-0.139344244888;ATF4:-0.143891140337;TFAP2{A,C}:-0.173933038414;NFE2L1:-0.204047970165;FOXL1:-0.220323073722;FOXQ1:-0.243945585133;SNAI1..3:-0.252399563059;PAX8:-0.265271300651;ATF6:-0.278532858497;FOXD3:-0.294864276143;DMAP1_NCOR{1,2}_SMARC:-0.328042035608;CRX:-0.36966046745;IRF1,2:-0.43555145868;CEBPA,B_DDIT3:-0.444771649671;GATA6:-0.463115081946;SPI1:-0.466907505145;NFY{A,B,C}:-0.469459802114;NFE2L2:-0.489437548149;NFE2:-0.513275624595;TAL1_TCF{3,4,12}:-0.577863719424;SPIB:-0.594392859929;PITX1..3:-0.602271253803;TBP:-0.625003204082;HNF1A:-0.644002123229;GLI1..3:-0.696454075123;RXRA_VDR{dimer}:-0.700486074502;BACH2:-0.740947413542;FOSL2:-0.750185940252;HNF4A_NR2F1,2:-0.824575487597;NFATC1..3:-0.835831737926;TP53:-0.842948475459;TFAP4:-0.880263768931;FOXO1,3,4:-0.918219233237;HES1:-0.928346266262;TFCP2:-0.929557601815;FOS_FOS{B,L1}_JUN{B,D}:-0.945121747584;XCPE1{core}:-0.974672798484;ETS1,2:-0.986182682394;TEAD1:-1.01878530661;RUNX1..3:-1.03580472682;HIF1A:-1.05672166121;HLF:-1.11148550406;FOX{I1,J2}:-1.14719747407;NR5A1,2:-1.14817775093;MYB:-1.18059595208;NFKB1_REL_RELA:-1.26911692357;ALX4:-1.29104237639;E2F1..5:-1.29942392623;ZNF148:-1.36868190414;NR1H4:-1.38615834399;SRF:-1.38761779864;PPARG:-1.50117026619;ELF1,2,4:-1.57477201357;ELK1,4_GABP{A,B1}:-1.62587535427;POU2F1..3:-1.7480981536;NKX2-2,8:-1.76973338656;RXR{A,B,G}:-1.77334956786;STAT5{A,B}:-2.06184802499;EN1,2:-2.11233457982;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.18983371557;HOX{A5,B5}:-2.24034241046;ESR1:-2.42797898259;NKX2-1,4:-2.69107152043;NR6A1:-2.72939123173
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10167-103B5;search_select_hide=table117:FF:10167-103B5
}}
}}

Latest revision as of 12:24, 3 June 2020

Name:amygdala - adult, donor10196
Species:Human (Homo sapiens)
Library ID:CNhs13793
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueamygdala
dev stageNA
sexfemale
age60
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005514
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13793 CAGE DRX008617 DRR009489
Accession ID Hg19

Library idBAMCTSS
CNhs13793 DRZ000914 DRZ002299
Accession ID Hg38

Library idBAMCTSS
CNhs13793 DRZ012264 DRZ013649
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.466
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.735
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.354
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.0462
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.475
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.3
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.3
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.155
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.742
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.134
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.232
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.84
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.843
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.843
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.6
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.475
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.199
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.697
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0.809
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.3
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.619
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.697
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.6
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.697
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.3
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.3
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.475
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13793

Jaspar motifP-value
MA0002.20.043
MA0003.10.331
MA0004.10.269
MA0006.10.212
MA0007.10.247
MA0009.10.338
MA0014.10.536
MA0017.10.00695
MA0018.20.13
MA0019.10.623
MA0024.10.459
MA0025.10.668
MA0027.10.357
MA0028.10.0199
MA0029.10.0864
MA0030.10.659
MA0031.10.496
MA0035.20.0125
MA0038.10.592
MA0039.20.0557
MA0040.10.535
MA0041.10.974
MA0042.10.974
MA0043.10.785
MA0046.10.0076
MA0047.20.0391
MA0048.10.0844
MA0050.11.38879e-4
MA0051.10.00316
MA0052.10.523
MA0055.10.00131
MA0057.10.978
MA0058.10.155
MA0059.10.0971
MA0060.10.658
MA0061.10.0113
MA0062.21.53352e-4
MA0065.20.00161
MA0066.10.0727
MA0067.10.699
MA0068.10.528
MA0069.10.561
MA0070.10.75
MA0071.10.0292
MA0072.10.243
MA0073.10.323
MA0074.10.154
MA0076.10.051
MA0077.10.89
MA0078.10.775
MA0079.20.957
MA0080.21.62532e-9
MA0081.10.0285
MA0083.10.0415
MA0084.10.801
MA0087.10.578
MA0088.10.148
MA0090.10.277
MA0091.10.855
MA0092.10.486
MA0093.10.247
MA0099.25.1366e-18
MA0100.10.581
MA0101.10.00179
MA0102.20.225
MA0103.10.334
MA0104.20.566
MA0105.10.0114
MA0106.10.0282
MA0107.10.00354
MA0108.20.763
MA0111.10.495
MA0112.20.00169
MA0113.10.625
MA0114.10.00282
MA0115.10.582
MA0116.10.0243
MA0117.10.961
MA0119.10.1
MA0122.10.566
MA0124.10.709
MA0125.10.41
MA0131.10.831
MA0135.10.0328
MA0136.13.58508e-14
MA0137.20.778
MA0138.20.144
MA0139.10.424
MA0140.15.23344e-4
MA0141.10.0124
MA0142.10.444
MA0143.10.558
MA0144.10.306
MA0145.10.188
MA0146.10.00339
MA0147.10.463
MA0148.10.0163
MA0149.10.0382
MA0150.11.55277e-4
MA0152.10.539
MA0153.10.351
MA0154.10.0977
MA0155.10.549
MA0156.11.93248e-10
MA0157.10.418
MA0159.10.0143
MA0160.10.00934
MA0162.10.127
MA0163.12.48495e-4
MA0164.10.867
MA0258.10.0121
MA0259.10.919



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13793

Novel motifP-value
10.0751
100.0333
1000.257
1010.279
1020.756
1030.19
1040.121
1050.144
1060.034
1070.102
1080.853
1090.00233
110.015
1100.0603
1110.383
1120.495
1130.443
1140.464
1150.88
1160.123
1170.0059
1180.122
1190.196
120.506
1200.256
1210.348
1220.652
1230.829
1240.0164
1250.512
1260.0295
1270.451
1280.22
1290.594
133.23748e-4
1300.0758
1310.0772
1320.591
1330.00155
1340.579
1350.115
1367.11523e-4
1370.781
1380.853
1390.309
140.811
1400.407
1410.586
1420.749
1430.106
1440.81
1450.141
1460.292
1470.741
1480.476
1490.242
150.0949
1500.14
1510.532
1520.0442
1530.848
1540.343
1550.623
1560.816
1570.408
1580.435
1590.0474
160.0769
1600.321
1610.198
1620.968
1630.46
1640.0256
1650.0332
1660.424
1670.799
1680.45
1690.0138
170.122
180.229
190.172
20.795
200.0907
210.0715
220.143
230.5
240.0243
250.507
261.20523e-5
270.863
280.685
290.0149
30.0351
300.819
310.882
320.0355
330.0583
340.559
350.775
360.215
370.0376
380.425
390.208
40.873
400.0387
410.516
420.212
430.0955
440.272
450.671
460.131
470.0967
480.0399
490.183
50.549
500.151
510.491
520.46
530.862
540.336
550.353
560.409
570.332
580.436
590.069
60.846
600.0384
610.0411
620.364
630.134
640.305
650.356
660.096
670.242
680.0652
690.539
70.0278
700.136
710.00969
720.298
730.0176
740.801
750.021
760.438
770.164
780.00124
790.388
80.0956
800.577
810.881
820.694
830.0106
840.399
850.285
860.143
871.61448e-4
880.748
890.954
90.398
900.0669
910.769
920.988
930.649
940.395
950.0117
960.996
970.689
980.533
990.617



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13793


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001871 (temporal lobe)
0001876 (amygdala)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
0000349 (limbic system)
0010011 (collection of basal ganglia)
0000454 (cerebral subcortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010151 (human amygdala - adult donor sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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