FFCP PHASE1:Hg19::chr19:1490362..1490375,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54760 | |EntrezGene=54760 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8746 | |HGNC=8746 | ||
|TSSclassifier=strong | |||
|UniProt=B3KQ28 | |UniProt=B3KQ28 | ||
|association_with_transcript=-21bp_to_ENST00000441747_5end | |association_with_transcript=-21bp_to_ENST00000441747_5end | ||
|cluster_id=chr19:1490362..1490375,- | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_2_at_PCSK4_5end | |description=CAGE_peak_2_at_PCSK4_5end | ||
|id=chr19:1490362..1490375,- | |id=chr19:1490362..1490375,- | ||
|ontology_enrichment_celltype=CL:0000346;1.26e-08;3!CL:1000428;1.26e-08;3!CL:0000306;8.85e-07;4!CL:0002222;8.85e-07;4!CL:0002224;8.85e-07;4 | |ontology_enrichment_celltype= | ||
| | |ontology_enrichment_celltype_v019=CL:0000346;1.26e-08;3!CL:1000428;1.26e-08;3!CL:0000306;8.85e-07;4!CL:0002222;8.85e-07;4!CL:0002224;8.85e-07;4 | ||
|ontology_enrichment_disease=DOID:5409;8.85e-07;4 | |ontology_enrichment_celltype_v019_2=CL:0000346,1.12e-08,3;CL:1000428,1.12e-08,3;CL:0000306,9.11e-07,4;CL:0002222,9.11e-07,4;CL:0002224,9.11e-07,4 | ||
|ontology_enrichment_uberon=UBERON:0000473;3.54e-12;8!UBERON:0003135;4.08e-09;11!UBERON:0000412;1.26e-08;3!UBERON:0001992;1.26e-08;3!UBERON:0010077;8.85e-07;4!UBERON:0005389;8.85e-07;4!UBERON:0000484;8.85e-07;4!UBERON:0000965;8.85e-07;4!UBERON:0001803;8.85e-07;4 | |ontology_enrichment_development_v019=UBERON:0009117;6.20e-10;10!UBERON:0005564;6.20e-10;10 | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5409;8.85e-07;4 | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.85e-13!90;UBERON:0003075!1.29e-12!86;UBERON:0007284!1.29e-12!86;UBERON:0000073!1.30e-12!94;UBERON:0001016!1.30e-12!94;UBERON:0003056!1.50e-12!61;UBERON:0005743!1.57e-12!86;UBERON:0001893!2.76e-12!34;UBERON:0002780!3.10e-12!41;UBERON:0001890!3.10e-12!41;UBERON:0006240!3.10e-12!41;UBERON:0002791!8.34e-12!33;UBERON:0003080!9.56e-12!42;UBERON:0002020!1.99e-11!34;UBERON:0003528!1.99e-11!34;UBERON:0001017!3.86e-11!82;UBERON:0001869!3.96e-11!32;UBERON:0001049!1.48e-10!57;UBERON:0005068!1.48e-10!57;UBERON:0006241!1.48e-10!57;UBERON:0007135!1.48e-10!57;UBERON:0000955!3.51e-10!69;UBERON:0006238!3.51e-10!69;UBERON:0002616!7.81e-10!59;UBERON:0000924!8.07e-10!173;UBERON:0006601!8.07e-10!173;UBERON:0000153!2.86e-09!129;UBERON:0007811!2.86e-09!129;UBERON:0004121!2.96e-09!169;UBERON:0000033!3.75e-09!123;UBERON:0000956!7.05e-09!25;UBERON:0000203!7.05e-09!25;UBERON:0001950!3.13e-08!20;UBERON:0002619!3.94e-08!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;3.54e-12;8!UBERON:0003135;4.08e-09;11!UBERON:0000412;1.26e-08;3!UBERON:0001992;1.26e-08;3!UBERON:0010077;8.85e-07;4!UBERON:0005389;8.85e-07;4!UBERON:0000484;8.85e-07;4!UBERON:0000965;8.85e-07;4!UBERON:0001803;8.85e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.54e-12,8;UBERON:0003135,4.08e-09,11;UBERON:0000412,1.12e-08,3;UBERON:0001992,1.12e-08,3;UBERON:0010077,9.11e-07,4;UBERON:0005389,9.11e-07,4;UBERON:0000484,9.11e-07,4;UBERON:0002546,9.11e-07,4;UBERON:0000965,9.11e-07,4;UBERON:0001803,9.11e-07,4;UBERON:0003073,9.11e-07,4;UBERON:0005426,9.11e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0.273748850145768,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,1.94826728407911,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0.670700859703636,0,0.361439152384566,0,0,0,0,0.0945348171640679,0,0.263504357079378,8.31717129410475,0,0,0,0.174129737299267,0,0.476981248610684,0,0.371457501329565,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0.397227542439656,0.573673241497627,0,0,0,0,0.311211035399766,0.134710672069688,0,0.151357427644931,0,0.234321431833797,0,0.570471821544449,0,0,0,0,0,0,0.206651562351531,0,0.247266929278557,0,0,0,0,0,0,0,0.150238058906597,0.113432183160021,0,0,0.211931901159562,0,0.103052529238439,0,0.37223371266318,0,0.0974370051611986,0.252433774244115,0.184099797284599,0,0,0,0,0,0,0,0.487894824518382,0.132529768321485,0.464775771478074,0.207322110030741,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.882926198829301,0,0,0,0,0,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0.264145302039678,0,0,0,0,0.381988425558278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0.128343036279748,0.508189248444927,0,0,0.502548796003046,0,0,0,0,0,0,0.271265023699736,0,0,0.157702415033935,0.117141414992713,0,0,0,0,0,0.0868836144680828,0.391602314925481,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0.316654886678627,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.325378394664303,0.103041011647722,0.0915694648183434,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0.178064071293475,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.245040215981032,0.371606350251437,0,0.284567373393656,0.478278818186467,0,0,0,0,0.280797178113459,0,0,0,0.169291777801603,0.1605880751037,0,0,0,0,0.447352215784832,0,0,0,0,0,0,0,0,0.146508179271894,0.606802608747567,0.222886768554957,0,0,0,0,0.994147647766298,0.422008249231538,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.185536196323703,0,0,0.61221999997337,0,0.1137934482855,0,0,0,0,0,0,0.361789315876224,0,0,0,0,0.21787692703798,0,0.0769502585037971,0,0,0.359030577639089,0,0.638002319463839,0,0,0,0,0,0,0,0,0,0.158936578980379,0.210998064528027,0.326465616318295,0,0,0,0,0,0,0.123563938946503,0.313265848516366,0.269604531922708,0,0.234264445725339,0,0.19566461893209,0,0.394584402849391,0,0.30607276163049,0.126373159256976,0.150323419414493,0,0,0,0.313932918407225,0,0.284609546029793,1.24807205711825,0.173559738335131,0,0,0,0.51595809741485,0,0,0,0,0.264768380074501,0.90392296312213,0,0,0.316553979779393,0.391102765469606,0.0801588202515337,0,0,0,0.229073192331831,0,0,0.372757606696298,0,0,0.104602846312333,0.101998217636322,0.577901179803038,0,0.136905378891993,0,0,0.262887354279314,0,0,0,0,0,0,0.0671834724867263,0,0,0.0787831823072236,0.164831716762333,0,0.0984274815147488,0,0,0.136203406111576,0.160753148465019,0.275078873194468,0,0,0,0.485996453264197,0,0.0788057072991982,0.209818352539992,0,0.179287339332845,0,0,0,0.5085370753095,0.542999601753713,0,0,1.19730191562487,0,0.170388021785422,0.113312091520126,0,0,0,0.52893040697076,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0.327872630709804,0.157054096250234,0,0.122026264901963,0,0,0.221858103073705,0.248385611765534,0,0,0,0.285465333544967,0.235265819698172,0,0.28984205722165,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0.107410557042488,0.464033759878494,0,0,0,0,0,0.192619830407303,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.132864840313363,0.163565394255844,0,0,0,0,0,0.344429959321631,0,0,0,0,0,0,0.786329709279482,0.327628914576042,0.33946505990805,0.850299680406731,0,0,0,0,0,0.705351887381368,0,0.449604575675217,0,0,0.205116364240755,0.504143392443436,0.484100767249525,0.161475645631851,0,0.0981477185010256,0.235939446695481,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.135075169236789,0.781078098613847,0,0.507326481551255,1.09394961803644,0,0,0,0,0,0,0,0.455324382702595,0,0.115233987555779,0,0.203909198930495,0.328863867814245,0.354581522651905,0,0,0.628462359664008,0.280272163313789,0,0.215927591218621,0,0.500335809236594,0.158013611732727,0.116241425368125,0.173858272302579,0,0,0,0,0,0,0.426067023795788,0,0,0.31020638566432,0,0.111855431797792,0,0,0,0,0,0,0,0.198950775161368,1.07028081699812,0,0,0,0,0.218559560503957,0,0,0,0.196308467114945,0,0,0,0,0.128915775947154,0,0.178553938605658,0,0,0,0,0.143339583151451,0,0.407948941145488,0,0,0,0,0,0,0,0.126698501011437,0,0.26721740526556,0,0,12.2761491113548,17.953596720464,0,0.310298987585686,0,0,0.1937667295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| ||
|short_description=p2@PCSK4 | |short_description=p2@PCSK4 | ||
}} | }} |
Latest revision as of 06:10, 16 September 2015
Short description: | p2@PCSK4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PCSK4_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -21bp_to_ENST00000441747_5end |
EntrezGene: | PCSK4 |
HGNC: | 8746 |
UniProt: | B3KQ28 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hair follicle dermal papilla cell | 1.12e-08 | 3 |
stem cell of epidermis | 1.12e-08 | 3 |
crystallin accumulating cell | 9.11e-07 | 4 |
vertebrate lens cell | 9.11e-07 | 4 |
lens epithelial cell | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
testis | 3.54e-12 | 8 |
male reproductive organ | 4.08e-09 | 11 |
dermal papilla | 1.12e-08 | 3 |
papillary layer of dermis | 1.12e-08 | 3 |
cuboidal epithelium | 9.11e-07 | 4 |
transparent eye structure | 9.11e-07 | 4 |
simple cuboidal epithelium | 9.11e-07 | 4 |
cranial placode | 9.11e-07 | 4 |
lens of camera-type eye | 9.11e-07 | 4 |
epithelium of lens | 9.11e-07 | 4 |
lens placode | 9.11e-07 | 4 |
lens vesicle | 9.11e-07 | 4 |