FFCP PHASE1:Hg19::chr3:159570958..159570975,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=29970 | |EntrezGene=29970 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15678 | |HGNC=15678 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=177bp_to_ENST00000482885_5end | |association_with_transcript=177bp_to_ENST00000482885_5end | ||
|cluster_id=chr3:159570958..159570975,+ | |||
|coexpression_cluster_id=C20 | |coexpression_cluster_id=C20 | ||
|description=CAGE_peak_40_at_SCHIP1_5end | |description=CAGE_peak_40_at_SCHIP1_5end | ||
|id=chr3:159570958..159570975,+ | |id=chr3:159570958..159570975,+ | ||
|ontology_enrichment_celltype=CL:0002618;7.96e-29;3!CL:0002139;2.08e-18;24!CL:0002543;9.58e-15;6!CL:0000071;6.01e-13;18!CL:0000115;1.06e-09;36!CL:0002138;3.80e-07;6 | |ontology_enrichment_celltype=CL:0002139!3.31e-26!24;CL:0000115!2.15e-18!35;CL:0000071!1.06e-15!18;CL:0002546!1.06e-15!18;CL:0002078!1.63e-13!44;CL:0005020!3.38e-13!6;CL:0002138!3.38e-13!6;CL:0005022!3.38e-13!6;CL:0000213!2.15e-10!57;CL:0000215!2.15e-10!57;CL:1000413!2.77e-08!9;CL:0002618!5.02e-08!3 | ||
| | |ontology_enrichment_celltype_v019=CL:0002618;7.96e-29;3!CL:0002139;2.08e-18;24!CL:0002543;9.58e-15;6!CL:0000071;6.01e-13;18!CL:0000115;1.06e-09;36!CL:0002138;3.80e-07;6 | ||
|ontology_enrichment_disease=DOID:114;6.23e-20;2!DOID:178;1.10e-10;1!DOID:326;1.10e-10;1!DOID:3978;1.10e-10;1!DOID:3394;1.10e-10;1!DOID:5844;1.10e-10;1!DOID:1287;1.91e-10;4 | |ontology_enrichment_celltype_v019_2=CL:0002618,1.01e-28,3;CL:0002139,2.00e-18,24;CL:0002543,1.08e-14,6;CL:0000071,5.64e-13,18;CL:0002546,5.64e-13,18;CL:0000115,4.60e-12,36;CL:0002078,1.64e-09,45;CL:0000213,3.21e-07,58;CL:0000215,3.21e-07,58;CL:0005020,3.92e-07,6;CL:0002138,3.92e-07,6;CL:0005022,3.92e-07,6 | ||
|ontology_enrichment_uberon=UBERON:0005090;3.02e-20;2!UBERON:0001630;3.02e-20;2!UBERON:0007100;3.15e-18;25!UBERON:0002066;1.43e-17;5!UBERON:0004151;6.73e-14;3!UBERON:0004638;6.01e-13;18!UBERON:0001986;6.01e-13;18!UBERON:0004852;6.01e-13;18!UBERON:0002426;2.53e-11;1!UBERON:0003831;2.53e-11;1!UBERON:0003898;2.53e-11;1!UBERON:0004830;2.53e-11;1!UBERON:0003830;2.53e-11;1!UBERON:0005175;2.53e-11;1!UBERON:0001774;2.53e-11;1!UBERON:0001103;2.53e-11;1!UBERON:0002084;4.15e-11;1!UBERON:0002082;4.15e-11;1!UBERON:0002079;5.30e-11;1!UBERON:0002146;5.30e-11;1!UBERON:0005623;5.30e-11;1!UBERON:0001389;1.10e-10;1!UBERON:0000026;1.10e-10;1!UBERON:0008784;1.10e-10;1!UBERON:0006058;1.10e-10;1!UBERON:0003663;1.10e-10;1!UBERON:0004256;1.10e-10;1!UBERON:0004708;1.10e-10;1!UBERON:0002101;1.10e-10;1!UBERON:0004709;1.10e-10;1!UBERON:0002529;1.10e-10;1!UBERON:0010538;1.10e-10;1!UBERON:0003661;1.10e-10;1!UBERON:0010890;1.10e-10;1!UBERON:0002471;1.10e-10;1!UBERON:0001383;1.10e-10;1!UBERON:0010758;1.10e-10;1!UBERON:0010707;1.10e-10;1!UBERON:0000978;1.10e-10;1!UBERON:0002103;1.10e-10;1!UBERON:0001665;1.10e-10;1!UBERON:0003823;1.10e-10;1!UBERON:0000154;1.10e-10;1!UBERON:0010709;1.10e-10;1!UBERON:0000487;1.42e-10;22!UBERON:0001638;5.12e-10;9!UBERON:0010260;5.12e-10;9!UBERON:0003920;5.12e-10;9!UBERON:0004582;5.12e-10;9!UBERON:0001134;8.02e-10;16!UBERON:0002036;8.02e-10;16!UBERON:0006914;2.73e-09;25!UBERON:0000948;2.82e-07;22!UBERON:0001009;5.08e-07;112 | |ontology_enrichment_development_v019=CL:0002546;6.01e-13;18!UBERON:0004140;2.79e-11;1!UBERON:0010226;4.15e-11;1!UBERON:0010227;5.30e-11;1!CL:0005022;3.80e-07;6 | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:114;6.23e-20;2!DOID:178;1.10e-10;1!DOID:326;1.10e-10;1!DOID:3978;1.10e-10;1!DOID:3394;1.10e-10;1!DOID:5844;1.10e-10;1!DOID:1287;1.91e-10;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,4.04e-20,2;DOID:178,7.46e-11,1;DOID:326,7.46e-11,1;DOID:3978,7.46e-11,1;DOID:3394,7.46e-11,1;DOID:5844,7.46e-11,1;DOID:1287,1.54e-10,4 | |||
|ontology_enrichment_uberon=UBERON:0001986!1.06e-15!18;UBERON:0004638!1.06e-15!18;UBERON:0004852!1.06e-15!18;UBERON:0000487!2.82e-12!22;UBERON:0007023!1.17e-11!115;UBERON:0006914!1.95e-10!25;UBERON:0002465!8.08e-10!10;UBERON:0007100!8.32e-10!27;UBERON:0001009!8.54e-10!113;UBERON:0001473!1.13e-09!8;UBERON:0004536!1.13e-09!8;UBERON:0006558!1.13e-09!8;UBERON:0003103!1.26e-09!69;UBERON:0000055!7.96e-09!69;UBERON:0004872!8.68e-09!84;UBERON:0003915!2.77e-08!9;UBERON:0004700!2.77e-08!9;UBERON:0001917!2.77e-08!9;UBERON:0004151!5.02e-08!3;UBERON:0003978!8.42e-08!3;UBERON:0009751!8.42e-08!3;UBERON:0000946!8.42e-08!3;UBERON:0002523!8.42e-08!3;UBERON:0005983!8.42e-08!3;UBERON:0002165!8.42e-08!3;UBERON:0002062!8.42e-08!3;UBERON:0007280!8.42e-08!3;UBERON:0004535!1.37e-07!110;UBERON:0001723!1.98e-07!3;UBERON:0001033!1.98e-07!3;UBERON:0010056!1.98e-07!3;UBERON:0002049!4.84e-07!79;UBERON:0007798!4.84e-07!79 | |||
|ontology_enrichment_uberon_v019=UBERON:0005090;3.02e-20;2!UBERON:0001630;3.02e-20;2!UBERON:0007100;3.15e-18;25!UBERON:0002066;1.43e-17;5!UBERON:0004151;6.73e-14;3!UBERON:0004638;6.01e-13;18!UBERON:0001986;6.01e-13;18!UBERON:0004852;6.01e-13;18!UBERON:0002426;2.53e-11;1!UBERON:0003831;2.53e-11;1!UBERON:0003898;2.53e-11;1!UBERON:0004830;2.53e-11;1!UBERON:0003830;2.53e-11;1!UBERON:0005175;2.53e-11;1!UBERON:0001774;2.53e-11;1!UBERON:0001103;2.53e-11;1!UBERON:0002084;4.15e-11;1!UBERON:0002082;4.15e-11;1!UBERON:0002079;5.30e-11;1!UBERON:0002146;5.30e-11;1!UBERON:0005623;5.30e-11;1!UBERON:0001389;1.10e-10;1!UBERON:0000026;1.10e-10;1!UBERON:0008784;1.10e-10;1!UBERON:0006058;1.10e-10;1!UBERON:0003663;1.10e-10;1!UBERON:0004256;1.10e-10;1!UBERON:0004708;1.10e-10;1!UBERON:0002101;1.10e-10;1!UBERON:0004709;1.10e-10;1!UBERON:0002529;1.10e-10;1!UBERON:0010538;1.10e-10;1!UBERON:0003661;1.10e-10;1!UBERON:0010890;1.10e-10;1!UBERON:0002471;1.10e-10;1!UBERON:0001383;1.10e-10;1!UBERON:0010758;1.10e-10;1!UBERON:0010707;1.10e-10;1!UBERON:0000978;1.10e-10;1!UBERON:0002103;1.10e-10;1!UBERON:0001665;1.10e-10;1!UBERON:0003823;1.10e-10;1!UBERON:0000154;1.10e-10;1!UBERON:0010709;1.10e-10;1!UBERON:0000487;1.42e-10;22!UBERON:0001638;5.12e-10;9!UBERON:0010260;5.12e-10;9!UBERON:0003920;5.12e-10;9!UBERON:0004582;5.12e-10;9!UBERON:0001134;8.02e-10;16!UBERON:0002036;8.02e-10;16!UBERON:0006914;2.73e-09;25!UBERON:0000948;2.82e-07;22!UBERON:0001009;5.08e-07;112 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005090,1.86e-20,2;UBERON:0001630,1.86e-20,2;UBERON:0002066,1.65e-17,5;UBERON:0007100,7.01e-17,27;UBERON:0001009,2.09e-14,112;UBERON:0004151,6.12e-14,3;UBERON:0004638,5.64e-13,18;UBERON:0001986,5.64e-13,18;UBERON:0004852,5.64e-13,18;UBERON:0002426,2.53e-11,1;UBERON:0003831,2.53e-11,1;UBERON:0003898,2.53e-11,1;UBERON:0004830,2.53e-11,1;UBERON:0003830,2.53e-11,1;UBERON:0005175,2.53e-11,1;UBERON:0001774,2.53e-11,1;UBERON:0001103,2.53e-11,1;UBERON:0010084,2.53e-11,1;UBERON:0002084,4.15e-11,1;UBERON:0002082,4.15e-11,1;UBERON:0010226,4.15e-11,1;UBERON:0002079,4.58e-11,1;UBERON:0002146,5.57e-11,1;UBERON:0005623,5.57e-11,1;UBERON:0005418,6.77e-11,1;UBERON:0001389,6.77e-11,1;UBERON:0000026,6.77e-11,1;UBERON:0008784,6.77e-11,1;UBERON:0006058,6.77e-11,1;UBERON:0003663,6.77e-11,1;UBERON:0004256,6.77e-11,1;UBERON:0004708,6.77e-11,1;UBERON:0002101,6.77e-11,1;UBERON:0004709,6.77e-11,1;UBERON:0002529,6.77e-11,1;UBERON:0010538,6.77e-11,1;UBERON:0003661,6.77e-11,1;UBERON:0010890,6.77e-11,1;UBERON:0002471,6.77e-11,1;UBERON:0001383,6.77e-11,1;UBERON:0004357,6.77e-11,1;UBERON:0004347,6.77e-11,1;UBERON:0005420,6.77e-11,1;UBERON:0005732,6.77e-11,1;UBERON:0010758,6.77e-11,1;UBERON:0010707,6.77e-11,1;UBERON:0000978,6.77e-11,1;UBERON:0002103,6.77e-11,1;UBERON:0001665,6.77e-11,1;UBERON:0003823,6.77e-11,1;UBERON:0000154,6.77e-11,1;UBERON:0010709,6.77e-11,1;UBERON:0005733,6.77e-11,1;UBERON:0005730,6.77e-11,1;UBERON:0000487,1.35e-10,22;UBERON:0001638,5.54e-10,9;UBERON:0010260,5.54e-10,9;UBERON:0003920,5.54e-10,9;UBERON:0004582,5.54e-10,9;UBERON:0006914,2.61e-09,25;UBERON:0004535,7.60e-09,109;UBERON:0003103,3.78e-08,68;UBERON:0004872,4.46e-08,83;UBERON:0000055,7.07e-08,68;UBERON:0002049,9.66e-07,78;UBERON:0007798,9.66e-07,78 | |||
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|short_description=p40@SCHIP1 | |short_description=p40@SCHIP1 | ||
}} | }} |
Latest revision as of 09:47, 16 September 2015
Short description: | p40@SCHIP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_40_at_SCHIP1_5end |
Coexpression cluster: | C20_heart_left_skeletal_diaphragm_tongue_umbilical_throat |
Association with transcript: | 177bp_to_ENST00000482885_5end |
EntrezGene: | SCHIP1 |
HGNC: | 15678 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of umbilical vein | 1.01e-28 | 3 |
endothelial cell of vascular tree | 2.00e-18 | 24 |
vein endothelial cell | 1.08e-14 | 6 |
blood vessel endothelial cell | 5.64e-13 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.64e-13 | 18 |
endothelial cell | 4.60e-12 | 36 |
meso-epithelial cell | 1.64e-09 | 45 |
lining cell | 3.21e-07 | 58 |
barrier cell | 3.21e-07 | 58 |
lymphangioblast | 3.92e-07 | 6 |
endothelial cell of lymphatic vessel | 3.92e-07 | 6 |
vascular lymphangioblast | 3.92e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
heart disease | 4.04e-20 | 2 |
vascular disease | 7.46e-11 | 1 |
ischemia | 7.46e-11 | 1 |
extrinsic cardiomyopathy | 7.46e-11 | 1 |
myocardial ischemia | 7.46e-11 | 1 |
myocardial infarction | 7.46e-11 | 1 |
cardiovascular system disease | 1.54e-10 | 4 |