FFCP PHASE1:Hg19::chr4:120446538..120446544,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:120446538..120446544,- | |||
|coexpression_cluster_id=C3362 | |coexpression_cluster_id=C3362 | ||
|description=CAGE_peak_at_chr4:120446538..120446544,- | |description=CAGE_peak_at_chr4:120446538..120446544,- | ||
|id=chr4:120446538..120446544,- | |id=chr4:120446538..120446544,- | ||
|ontology_enrichment_celltype=CL:0002593!3.87e-17!2;CL:0002589!2.37e-16!2;CL:0002195!2.56e-16!2;CL:0002571!2.56e-16!2;CL:0000359!3.17e-11!32;CL:0000192!8.54e-11!42;CL:0000514!8.54e-11!42;CL:0000222!2.80e-10!119;CL:0002568!1.60e-09!1;CL:0002174!3.05e-09!1;CL:0000501!3.05e-09!1;CL:0000342!8.49e-09!1;CL:0002565!8.49e-09!1;CL:0000187!3.73e-08!54;CL:0000680!1.14e-07!57;CL:0000056!1.14e-07!57;CL:0000355!1.14e-07!57;CL:0002595!2.24e-07!5;CL:0000183!2.26e-07!59;CL:0000393!3.13e-07!60;CL:0000211!3.13e-07!60 | |ontology_enrichment_celltype=CL:0002593!3.87e-17!2;CL:0002589!2.37e-16!2;CL:0002195!2.56e-16!2;CL:0002571!2.56e-16!2;CL:0000359!3.17e-11!32;CL:0000192!8.54e-11!42;CL:0000514!8.54e-11!42;CL:0000222!2.80e-10!119;CL:0002568!1.60e-09!1;CL:0002174!3.05e-09!1;CL:0000501!3.05e-09!1;CL:0000342!8.49e-09!1;CL:0002565!8.49e-09!1;CL:0000187!3.73e-08!54;CL:0000680!1.14e-07!57;CL:0000056!1.14e-07!57;CL:0000355!1.14e-07!57;CL:0002595!2.24e-07!5;CL:0000183!2.26e-07!59;CL:0000393!3.13e-07!60;CL:0000211!3.13e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0002568;1.23e-66;1!CL:0002593;5.96e-34;2!CL:0002595;1.71e-14;5!CL:0002569;2.19e-12;6!CL:0002138;2.59e-12;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002568,1.23e-66,1;CL:0002593,5.04e-34,2;CL:0002595,1.60e-14,5;CL:0002569,2.19e-12,6;CL:0005020,2.74e-12,6;CL:0002138,2.74e-12,6;CL:0005022,2.74e-12,6 | |||
|ontology_enrichment_development_v019=CL:0005022;2.59e-12;6 | |||
|ontology_enrichment_disease=DOID:2394!7.76e-09!14 | |ontology_enrichment_disease=DOID:2394!7.76e-09!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002456!3.87e-17!2;UBERON:0001529!2.37e-16!2;UBERON:0007204!2.37e-16!2;UBERON:0001637!7.34e-11!42;UBERON:0003509!7.34e-11!42;UBERON:0004572!7.34e-11!42;UBERON:0002049!4.55e-10!79;UBERON:0007798!4.55e-10!79;UBERON:0000055!9.77e-10!69;UBERON:0002506!8.49e-09!1;UBERON:0001769!8.49e-09!1;UBERON:0004573!4.39e-08!33;UBERON:0004571!4.39e-08!33;UBERON:0003834!2.24e-07!5;UBERON:0001533!2.24e-07!5;UBERON:0001981!2.83e-07!60;UBERON:0007500!2.83e-07!60;UBERON:0004537!2.83e-07!60;UBERON:0006965!2.83e-07!60;UBERON:0000490!4.17e-07!138;UBERON:0001134!4.29e-07!61;UBERON:0002036!4.29e-07!61;UBERON:0003082!4.29e-07!61;UBERON:0002118!6.00e-07!5;UBERON:0004532!6.00e-07!5;UBERON:0002385!7.79e-07!63;UBERON:0001015!7.79e-07!63;UBERON:0000383!7.79e-07!63 | |ontology_enrichment_uberon=UBERON:0002456!3.87e-17!2;UBERON:0001529!2.37e-16!2;UBERON:0007204!2.37e-16!2;UBERON:0001637!7.34e-11!42;UBERON:0003509!7.34e-11!42;UBERON:0004572!7.34e-11!42;UBERON:0002049!4.55e-10!79;UBERON:0007798!4.55e-10!79;UBERON:0000055!9.77e-10!69;UBERON:0002506!8.49e-09!1;UBERON:0001769!8.49e-09!1;UBERON:0004573!4.39e-08!33;UBERON:0004571!4.39e-08!33;UBERON:0003834!2.24e-07!5;UBERON:0001533!2.24e-07!5;UBERON:0001981!2.83e-07!60;UBERON:0007500!2.83e-07!60;UBERON:0004537!2.83e-07!60;UBERON:0006965!2.83e-07!60;UBERON:0000490!4.17e-07!138;UBERON:0001134!4.29e-07!61;UBERON:0002036!4.29e-07!61;UBERON:0003082!4.29e-07!61;UBERON:0002118!6.00e-07!5;UBERON:0004532!6.00e-07!5;UBERON:0002385!7.79e-07!63;UBERON:0001015!7.79e-07!63;UBERON:0000383!7.79e-07!63 | ||
|ontology_enrichment_uberon_v019=UBERON:0002456;5.96e-34;2!UBERON:0003834;1.71e-14;5!UBERON:0001533;1.71e-14;5!UBERON:0003422;2.19e-12;6!UBERON:0003104;8.16e-11;7!UBERON:0009142;8.16e-11;7!UBERON:0003513;9.43e-11;7!UBERON:0001473;1.41e-09;8!UBERON:0004536;1.41e-09;8!UBERON:0006558;1.41e-09;8!UBERON:0002331;5.73e-08;10!UBERON:0002465;6.34e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002456,5.04e-34,2;UBERON:0003834,1.60e-14,5;UBERON:0001533,1.60e-14,5;UBERON:0003422,2.19e-12,6;UBERON:0003513,8.99e-11,7;UBERON:0001473,1.47e-09,8;UBERON:0004536,1.47e-09,8;UBERON:0006558,1.47e-09,8;UBERON:0002331,5.73e-08,10;UBERON:0000358,5.73e-08,10;UBERON:0000307,5.73e-08,10;UBERON:0000091,5.73e-08,10;UBERON:0000087,5.73e-08,10;UBERON:0007010,5.73e-08,10;UBERON:0007806,5.73e-08,10;UBERON:0008780,5.73e-08,10;UBERON:0005728,5.73e-08,10;UBERON:0002465,6.56e-08,10 | |||
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|short_description=p@chr4:120446538..120446544,- | |short_description=p@chr4:120446538..120446544,- | ||
}} | }} |
Latest revision as of 01:18, 30 July 2015
Short description: | p@chr4:120446538..120446544, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:120446538..120446544, - |
Coexpression cluster: | C3362_Mesenchymal_Smooth_mesenchymal_Mesothelial_Aortic_Endothelial_Preadipocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of Wharton's jelly | 1.23e-66 | 1 |
smooth muscle cell of the internal thoracic artery | 5.04e-34 | 2 |
smooth muscle cell of the subclavian artery | 1.60e-14 | 5 |
mesenchymal stem cell of umbilical cord | 2.19e-12 | 6 |
lymphangioblast | 2.74e-12 | 6 |
endothelial cell of lymphatic vessel | 2.74e-12 | 6 |
vascular lymphangioblast | 2.74e-12 | 6 |
Ontology term | p-value | n |
---|---|---|
internal thoracic artery | 5.04e-34 | 2 |
thoracic segment blood vessel | 1.60e-14 | 5 |
subclavian artery | 1.60e-14 | 5 |
mesenchyme of umbilical cord | 2.19e-12 | 6 |
trunk blood vessel | 8.99e-11 | 7 |
lymphatic vessel | 1.47e-09 | 8 |
lymph vasculature | 1.47e-09 | 8 |
lymphatic part of lymphoid system | 1.47e-09 | 8 |
umbilical cord | 5.73e-08 | 10 |
blastocyst | 5.73e-08 | 10 |
blastula | 5.73e-08 | 10 |
bilaminar disc | 5.73e-08 | 10 |
inner cell mass | 5.73e-08 | 10 |
cleaving embryo | 5.73e-08 | 10 |
connecting stalk | 5.73e-08 | 10 |
inner cell mass derived epiblast | 5.73e-08 | 10 |
extraembryonic mesoderm | 5.73e-08 | 10 |
lymphoid system | 6.56e-08 | 10 |