FFCP PHASE1:Hg19::chr1:200990428..200990432,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:200990428..200990432,- | |||
|coexpression_cluster_id=C21 | |coexpression_cluster_id=C21 | ||
|description=CAGE_peak_at_chr1:200990428..200990432,- | |description=CAGE_peak_at_chr1:200990428..200990432,- | ||
|id=chr1:200990428..200990432,- | |id=chr1:200990428..200990432,- | ||
|ontology_enrichment_celltype=CL:0000838!2.73e-14!52;CL:0000542!5.54e-14!53;CL:0000051!5.54e-14!53;CL:0000945!1.54e-13!24;CL:0000826!1.54e-13!24;CL:0000080!1.51e-11!6;CL:0002127!9.79e-09!1;CL:0000914!9.79e-09!1;CL:0000911!9.79e-09!1;CL:0000814!9.79e-09!1;CL:0002042!9.79e-09!1;CL:0002039!9.79e-09!1;CL:0002040!9.79e-09!1;CL:0002041!9.79e-09!1 | |ontology_enrichment_celltype=CL:0000838!2.73e-14!52;CL:0000542!5.54e-14!53;CL:0000051!5.54e-14!53;CL:0000945!1.54e-13!24;CL:0000826!1.54e-13!24;CL:0000080!1.51e-11!6;CL:0002127!9.79e-09!1;CL:0000914!9.79e-09!1;CL:0000911!9.79e-09!1;CL:0000814!9.79e-09!1;CL:0002042!9.79e-09!1;CL:0002039!9.79e-09!1;CL:0002040!9.79e-09!1;CL:0002041!9.79e-09!1 | ||
|ontology_enrichment_celltype_v019=CL:0002127;1.48e-40;1!CL:0000911;1.48e-40;1!CL:0000814;1.48e-40;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,6.62e-41,1;CL:0000914,6.62e-41,1;CL:0000911,6.62e-41,1;CL:0000814,6.62e-41,1;CL:0002042,6.62e-41,1;CL:0002039,6.62e-41,1;CL:0002040,6.62e-41,1;CL:0002041,6.62e-41,1;CL:0000893,3.11e-21,2;CL:0002489,3.11e-21,2;CL:0000809,3.11e-21,2;CL:0000808,3.11e-21,2;CL:0000894,3.11e-21,2;CL:0000806,3.11e-21,2;CL:0000807,3.11e-21,2;CL:0000805,3.11e-21,2;CL:0002425,3.11e-21,2 | |||
|ontology_enrichment_development_v019=CL:0002425;4.66e-21;2 | |||
|ontology_enrichment_disease=DOID:4960!1.31e-08!1;DOID:0070004!1.31e-08!1;DOID:2355!5.43e-08!1 | |ontology_enrichment_disease=DOID:4960!1.31e-08!1;DOID:0070004!1.31e-08!1;DOID:2355!5.43e-08!1 | ||
|ontology_enrichment_disease_v019=DOID:4960;1.48e-40;1!DOID:0070004;1.48e-40;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4960,3.30e-40,1;DOID:0070004,3.30e-40,1 | |||
|ontology_enrichment_uberon=UBERON:0000178!6.37e-08!15;UBERON:0000179!6.37e-08!15;UBERON:0000463!6.37e-08!15;UBERON:0002331!4.20e-07!10;UBERON:0000358!4.20e-07!10;UBERON:0000307!4.20e-07!10;UBERON:0000091!4.20e-07!10;UBERON:0000087!4.20e-07!10;UBERON:0007806!4.20e-07!10;UBERON:0008780!4.20e-07!10;UBERON:0005728!4.20e-07!10 | |ontology_enrichment_uberon=UBERON:0000178!6.37e-08!15;UBERON:0000179!6.37e-08!15;UBERON:0000463!6.37e-08!15;UBERON:0002331!4.20e-07!10;UBERON:0000358!4.20e-07!10;UBERON:0000307!4.20e-07!10;UBERON:0000091!4.20e-07!10;UBERON:0000087!4.20e-07!10;UBERON:0007806!4.20e-07!10;UBERON:0008780!4.20e-07!10;UBERON:0005728!4.20e-07!10 | ||
|ontology_enrichment_uberon_v019=UBERON:0002331;3.44e-36;10!UBERON:0000178;1.78e-24;15!UBERON:0000179;1.78e-24;15!UBERON:0000463;1.78e-24;15!UBERON:0002390;6.29e-20;32!UBERON:0000478;1.18e-15;24!UBERON:0002193;6.92e-10;42!UBERON:0000922;6.32e-08;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,3.44e-36,10;UBERON:0000358,3.44e-36,10;UBERON:0000307,3.44e-36,10;UBERON:0000091,3.44e-36,10;UBERON:0000087,3.44e-36,10;UBERON:0007010,3.44e-36,10;UBERON:0007806,3.44e-36,10;UBERON:0008780,3.44e-36,10;UBERON:0005728,3.44e-36,10;UBERON:0000178,1.78e-24,15;UBERON:0000179,1.78e-24,15;UBERON:0000463,1.78e-24,15;UBERON:0000478,1.19e-15,24;UBERON:0002370,2.53e-11,4;UBERON:0005058,2.53e-11,4;UBERON:0009113,2.53e-11,4;UBERON:0003295,2.53e-11,4;UBERON:0005562,2.53e-11,4;UBERON:0002390,1.23e-10,98;UBERON:0003061,1.23e-10,98;UBERON:0002193,1.03e-09,108;UBERON:0003351,5.54e-08,6;UBERON:0004177,5.08e-07,7;UBERON:0005057,5.08e-07,7 | |||
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|short_description=p@chr1:200990428..200990432,- | |short_description=p@chr1:200990428..200990432,- | ||
}} | }} |
Latest revision as of 02:04, 28 July 2015
Short description: | p@chr1:200990428..200990432, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:200990428..200990432, - |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 6.62e-41 | 1 |
immature NK T cell | 6.62e-41 | 1 |
effector T cell | 6.62e-41 | 1 |
mature NK T cell | 6.62e-41 | 1 |
immature NK T cell stage IV | 6.62e-41 | 1 |
immature NK T cell stage I | 6.62e-41 | 1 |
immature NK T cell stage II | 6.62e-41 | 1 |
immature NK T cell stage III | 6.62e-41 | 1 |
thymocyte | 3.11e-21 | 2 |
double negative thymocyte | 3.11e-21 | 2 |
double-positive, alpha-beta thymocyte | 3.11e-21 | 2 |
DN4 thymocyte | 3.11e-21 | 2 |
DN1 thymic pro-T cell | 3.11e-21 | 2 |
DN2 thymocyte | 3.11e-21 | 2 |
DN3 thymocyte | 3.11e-21 | 2 |
immature single positive thymocyte | 3.11e-21 | 2 |
early T lineage precursor | 3.11e-21 | 2 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 3.44e-36 | 10 |
blastocyst | 3.44e-36 | 10 |
blastula | 3.44e-36 | 10 |
bilaminar disc | 3.44e-36 | 10 |
inner cell mass | 3.44e-36 | 10 |
cleaving embryo | 3.44e-36 | 10 |
connecting stalk | 3.44e-36 | 10 |
inner cell mass derived epiblast | 3.44e-36 | 10 |
extraembryonic mesoderm | 3.44e-36 | 10 |
blood | 1.78e-24 | 15 |
haemolymphatic fluid | 1.78e-24 | 15 |
organism substance | 1.78e-24 | 15 |
extraembryonic structure | 1.19e-15 | 24 |
thymus | 2.53e-11 | 4 |
hemolymphoid system gland | 2.53e-11 | 4 |
thymic region | 2.53e-11 | 4 |
pharyngeal gland | 2.53e-11 | 4 |
thymus primordium | 2.53e-11 | 4 |
hematopoietic system | 1.23e-10 | 98 |
blood island | 1.23e-10 | 98 |
hemolymphoid system | 1.03e-09 | 108 |
pharyngeal epithelium | 5.54e-08 | 6 |
hemopoietic organ | 5.08e-07 | 7 |
immune organ | 5.08e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
bone marrow cancer | 3.30e-40 | 1 |
myeloma | 3.30e-40 | 1 |