FFCP PHASE1:Hg19::chr12:52642466..52642508,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:52642466..52642508,+ | |||
|coexpression_cluster_id=C689 | |coexpression_cluster_id=C689 | ||
|description=CAGE_peak_at_chr12:52642466..52642508,+ | |description=CAGE_peak_at_chr12:52642466..52642508,+ | ||
|id=chr12:52642466..52642508,+ | |id=chr12:52642466..52642508,+ | ||
|ontology_enrichment_celltype=CL:0000066!5.84e-42!254;CL:0000077!7.68e-13!19;CL:0000076!4.69e-12!62;CL:0002368!2.38e-11!13;CL:0002076!9.85e-11!43;CL:0000063!3.77e-08!578;CL:0002202!9.51e-08!9;CL:0002632!9.51e-08!9;CL:0000223!1.52e-07!59;CL:0000082!1.71e-07!19;CL:0000213!5.40e-07!57;CL:0000215!5.40e-07!57 | |ontology_enrichment_celltype=CL:0000066!5.84e-42!254;CL:0000077!7.68e-13!19;CL:0000076!4.69e-12!62;CL:0002368!2.38e-11!13;CL:0002076!9.85e-11!43;CL:0000063!3.77e-08!578;CL:0002202!9.51e-08!9;CL:0002632!9.51e-08!9;CL:0000223!1.52e-07!59;CL:0000082!1.71e-07!19;CL:0000213!5.40e-07!57;CL:0000215!5.40e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0000077;2.27e-25;19!CL:0002368;1.75e-10;13!CL:0002577;4.19e-09;3!CL:0002202;4.22e-08;9!CL:0002632;4.22e-08;9!CL:0002536;6.48e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,2.55e-25,19;CL:0000066,3.98e-25,253;CL:0000076,1.41e-11,63;CL:0002368,2.55e-10,13;CL:0000213,5.20e-10,58;CL:0000215,5.20e-10,58;CL:0002577,1.70e-09,3;CL:0002076,3.86e-09,42;CL:0002202,5.92e-08,9;CL:0002632,5.92e-08,9;CL:0002536,5.67e-07,2;CL:0000349,7.10e-07,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.50e-16!106;DOID:0050687!3.78e-12!143;DOID:162!3.14e-08!235;DOID:14566!1.15e-07!239 | |ontology_enrichment_disease=DOID:305!1.50e-16!106;DOID:0050687!3.78e-12!143;DOID:162!3.14e-08!235;DOID:14566!1.15e-07!239 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.46e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0008947!1.12e-18!38;UBERON:0003258!1.12e-18!38;UBERON:0000065!1.88e-17!53;UBERON:0001004!4.09e-15!72;UBERON:0004119!6.01e-14!169;UBERON:0000925!6.01e-14!169;UBERON:0006595!6.01e-14!169;UBERON:0000072!6.47e-13!46;UBERON:0000077!2.35e-12!130;UBERON:0001048!1.82e-11!168;UBERON:0001737!3.52e-10!9;UBERON:0001007!4.41e-10!155;UBERON:0001555!4.41e-10!155;UBERON:0007026!4.41e-10!155;UBERON:0005153!5.49e-10!37;UBERON:0001041!1.30e-09!98;UBERON:0002048!4.81e-09!22;UBERON:0000117!4.81e-09!22;UBERON:0000171!4.81e-09!22;UBERON:0000170!4.81e-09!22;UBERON:0005597!4.81e-09!22;UBERON:0000118!4.81e-09!22;UBERON:0005178!1.55e-08!34;UBERON:0002224!1.55e-08!34;UBERON:0005631!2.02e-08!14;UBERON:0000158!2.02e-08!14;UBERON:0004921!2.17e-08!129;UBERON:0004185!2.17e-08!129;UBERON:0003124!3.60e-08!7;UBERON:0005181!4.01e-08!35;UBERON:0005911!5.48e-08!82;UBERON:0000915!1.55e-07!52;UBERON:0004802!1.71e-07!19;UBERON:0000115!1.71e-07!19;UBERON:0000464!3.72e-07!104;UBERON:0000063!4.65e-07!97;UBERON:0005157!6.93e-07!51 | |ontology_enrichment_uberon=UBERON:0008947!1.12e-18!38;UBERON:0003258!1.12e-18!38;UBERON:0000065!1.88e-17!53;UBERON:0001004!4.09e-15!72;UBERON:0004119!6.01e-14!169;UBERON:0000925!6.01e-14!169;UBERON:0006595!6.01e-14!169;UBERON:0000072!6.47e-13!46;UBERON:0000077!2.35e-12!130;UBERON:0001048!1.82e-11!168;UBERON:0001737!3.52e-10!9;UBERON:0001007!4.41e-10!155;UBERON:0001555!4.41e-10!155;UBERON:0007026!4.41e-10!155;UBERON:0005153!5.49e-10!37;UBERON:0001041!1.30e-09!98;UBERON:0002048!4.81e-09!22;UBERON:0000117!4.81e-09!22;UBERON:0000171!4.81e-09!22;UBERON:0000170!4.81e-09!22;UBERON:0005597!4.81e-09!22;UBERON:0000118!4.81e-09!22;UBERON:0005178!1.55e-08!34;UBERON:0002224!1.55e-08!34;UBERON:0005631!2.02e-08!14;UBERON:0000158!2.02e-08!14;UBERON:0004921!2.17e-08!129;UBERON:0004185!2.17e-08!129;UBERON:0003124!3.60e-08!7;UBERON:0005181!4.01e-08!35;UBERON:0005911!5.48e-08!82;UBERON:0000915!1.55e-07!52;UBERON:0004802!1.71e-07!19;UBERON:0000115!1.71e-07!19;UBERON:0000464!3.72e-07!104;UBERON:0000063!4.65e-07!97;UBERON:0005157!6.93e-07!51 | ||
|ontology_enrichment_uberon_v019=UBERON:0000072;6.83e-09;37!UBERON:0000065;2.04e-08;44!UBERON:0001737;5.46e-08;9!UBERON:0001557;5.46e-08;9!UBERON:0000058;3.21e-07;10!UBERON:0002394;3.77e-07;4!UBERON:0003928;3.77e-07;4!UBERON:0002294;3.86e-07;7!UBERON:0001173;3.86e-07;7!UBERON:0001987;6.25e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,7.34e-11,160;UBERON:0000925,7.34e-11,160;UBERON:0006595,7.34e-11,160;UBERON:0003124,9.43e-11,7;UBERON:0000065,2.69e-10,54;UBERON:0008947,2.93e-10,38;UBERON:0003258,2.93e-10,38;UBERON:0005631,1.06e-09,14;UBERON:0000158,1.06e-09,14;UBERON:0000072,3.51e-09,47;UBERON:0001004,1.50e-08,74;UBERON:0001048,3.37e-08,160;UBERON:0001737,3.82e-08,9;UBERON:0001041,1.44e-07,87;UBERON:0001007,2.73e-07,145;UBERON:0001555,2.73e-07,145;UBERON:0007026,2.73e-07,145;UBERON:0001987,3.21e-07,4;UBERON:0004340,3.21e-07,4 | |||
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| ||
|short_description=p@chr12:52642466..52642508,+ | |short_description=p@chr12:52642466..52642508,+ | ||
}} | }} |
Latest revision as of 09:30, 24 July 2015
Short description: | p@chr12:52642466..52642508, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52642466..52642508, + |
Coexpression cluster: | C689_Alveolar_mesothelioma_Retinal_Mesothelial_Prostate_bile_Tracheal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 2.55e-25 | 19 |
epithelial cell | 3.98e-25 | 253 |
squamous epithelial cell | 1.41e-11 | 63 |
respiratory epithelial cell | 2.55e-10 | 13 |
lining cell | 5.20e-10 | 58 |
barrier cell | 5.20e-10 | 58 |
placental epithelial cell | 1.70e-09 | 3 |
endo-epithelial cell | 3.86e-09 | 42 |
epithelial cell of tracheobronchial tree | 5.92e-08 | 9 |
epithelial cell of lower respiratory tract | 5.92e-08 | 9 |
amniotic epithelial cell | 5.67e-07 | 2 |
extraembryonic cell | 7.10e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 7.34e-11 | 160 |
endoderm | 7.34e-11 | 160 |
presumptive endoderm | 7.34e-11 | 160 |
chorion | 9.43e-11 | 7 |
respiratory tract | 2.69e-10 | 54 |
respiratory primordium | 2.93e-10 | 38 |
endoderm of foregut | 2.93e-10 | 38 |
extraembryonic membrane | 1.06e-09 | 14 |
membranous layer | 1.06e-09 | 14 |
segment of respiratory tract | 3.51e-09 | 47 |
respiratory system | 1.50e-08 | 74 |
primordium | 3.37e-08 | 160 |
larynx | 3.82e-08 | 9 |
foregut | 1.44e-07 | 87 |
digestive system | 2.73e-07 | 145 |
digestive tract | 2.73e-07 | 145 |
primitive gut | 2.73e-07 | 145 |
placenta | 3.21e-07 | 4 |
allantois | 3.21e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.46e-08 | 106 |