FFCP PHASE1:Hg19::chr15:65715204..65715225,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57722 | |EntrezGene=57722 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13770 | |HGNC=13770 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TDY8 | |UniProt=Q8TDY8 | ||
|association_with_transcript=184bp_to_ENST00000352385,NM_020962,uc002aou.1_5end | |association_with_transcript=184bp_to_ENST00000352385,NM_020962,uc002aou.1_5end | ||
|cluster_id=chr15:65715204..65715225,- | |||
|description=CAGE_peak_3_at_IGDCC4_5end | |description=CAGE_peak_3_at_IGDCC4_5end | ||
|id=chr15:65715204..65715225,- | |id=chr15:65715204..65715225,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002603;9.64e-11;3!CL:0002575;1.30e-08;2!CL:0002549;2.44e-08;2!CL:0000128;8.32e-08;7!CL:0000126;8.32e-08;7!CL:0000127;8.32e-08;7 | |ontology_enrichment_celltype_v019=CL:0002603;9.64e-11;3!CL:0002575;1.30e-08;2!CL:0002549;2.44e-08;2!CL:0000128;8.32e-08;7!CL:0000126;8.32e-08;7!CL:0000127;8.32e-08;7 | ||
|ontology_enrichment_celltype_v019_2=CL:0002603,7.71e-11,3;CL:0002575,1.32e-08,2;CL:0002549,2.33e-08,2;CL:0000128,5.86e-08,7;CL:0000126,5.86e-08,7;CL:0000127,5.86e-08,7;CL:0002453,5.86e-08,7 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0005629;2.44e-08;2!UBERON:0005358;2.44e-08;2!UBERON:0001886;2.44e-08;2!UBERON:0004086;2.44e-08;2!UBERON:0005282;2.44e-08;2!UBERON:0005281;2.44e-08;2!UBERON:0000341;3.18e-08;2!UBERON:0001897;1.81e-07;2!UBERON:0010225;1.81e-07;2!UBERON:0001017;3.13e-07;75!UBERON:0005284;6.97e-07;5 | |ontology_enrichment_uberon_v019=UBERON:0005629;2.44e-08;2!UBERON:0005358;2.44e-08;2!UBERON:0001886;2.44e-08;2!UBERON:0004086;2.44e-08;2!UBERON:0005282;2.44e-08;2!UBERON:0005281;2.44e-08;2!UBERON:0000341;3.18e-08;2!UBERON:0001897;1.81e-07;2!UBERON:0010225;1.81e-07;2!UBERON:0001017;3.13e-07;75!UBERON:0005284;6.97e-07;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.80e-15,81;UBERON:0000955,6.29e-14,68;UBERON:0006238,6.29e-14,68;UBERON:0001016,3.14e-13,89;UBERON:0004121,1.07e-11,171;UBERON:0000924,1.07e-11,171;UBERON:0006601,1.07e-11,171;UBERON:0001049,2.19e-09,56;UBERON:0005068,2.19e-09,56;UBERON:0006241,2.19e-09,56;UBERON:0007135,2.19e-09,56;UBERON:0010371,1.14e-08,104;UBERON:0005629,2.33e-08,2;UBERON:0005358,2.33e-08,2;UBERON:0001886,2.33e-08,2;UBERON:0004086,2.33e-08,2;UBERON:0005282,2.33e-08,2;UBERON:0005281,2.33e-08,2;UBERON:0000341,2.78e-08,2;UBERON:0001897,1.60e-07,2;UBERON:0010225,1.60e-07,2;UBERON:0010314,1.71e-07,132;UBERON:0000073,2.20e-07,53;UBERON:0002616,2.20e-07,53;UBERON:0003075,2.53e-07,82;UBERON:0007284,2.53e-07,82;UBERON:0003076,2.79e-07,15;UBERON:0003057,2.79e-07,15;UBERON:0005284,4.79e-07,5;UBERON:0002346,8.04e-07,86 | |||
|phase1_expression=0,0,0,1.0007329835313,0,0,0,0,0,0,0,0.218441372130172,0.527533956456907,0.123766352960047,0.331397375727916,0,0,0.730310090387373,0.487932798790507,1.10808952269109,1.83600622119828,2.5076377718247,1.71741592278634,0.136874425072884,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0.795285947051099,0,0.378139268656271,0.221729397462564,0.263504357079378,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0.49333509683432,0,0,0,3.02714855289863,2.88087962239999,0,0.312160076830321,0,0,0.352303495931295,0,0.140450806702248,0.204154171254893,0.368502951935304,0,3.56400857184616,0.494533858557114,0,0,0,0.125118519871964,0,0.438977620880838,0,0.45071417671979,0,0,1.2813443329114,0,0,0.103052529238439,0.772921620136887,0.37223371266318,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.621966330092223,0,0.36497735907583,3.12899064659632,3.85944562915731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,1.03993478527958,0,0.811512834825538,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0,0,0,0.448524337381443,0,0,0,0,0,0,0,0,0,0,0,1.08524321078289,0,0,0,0,0,0,0,0,0,0,0.479249710983165,0,1.42636905040718,0,0,0,0,0,0,0,0.508189248444927,0,2.31986643833309,0.502548796003046,0,0,0,0,0.12269149171914,0,0.542530047399471,0,0,0.157702415033935,0,0.601892199455438,0,0,0,0.553107505625109,0.434418072340414,9.59425671567429,5.83343820478455,0,0,0,0,0,1.81434175997808,0,0,0,0,0,0.160853921143607,0,0,0,0.0821271560138091,0,0,0,0,0,0.229628896329213,0,1.04899531967539,1.35359883872224,0.385076685522074,0.784349769176855,0,0.211103257785751,0,0,0,0,0,0,0,3.3243040357149,0.447749509444357,0,0,0,0,0,0.412164046590889,0.183138929636687,0,0,0.650060246036521,0,0.290012154876366,0,0,0.137836572484531,0.537101224341368,0.145016693914229,0.0852266274161009,1.4245125703478,0,0,0,0.10115778085555,0,0.31481234683064,0,0,0,0,0.37064843820784,0,1.86079184679834,0.316379424718726,0.571890581771475,0,0,0,0,1.07923474549989,0,0.117812402345686,0,0,0,0,0,0,0.272999822815972,0.565621727814851,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0.354761064070598,0,0,0.379473173765715,0.349934720244983,0,0,0,0.753150406214233,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,1.92495971052672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,1.40669416410513,0,0,0,0.19924798825107,0.552567831062295,0,0.306806047506464,0,0.622079175323615,0.269605053441981,0,0,0.295930216910801,0,0,0.969332746095218,1.11321717794222,1.99613798001194,0,0,0,0,0,0,0.344743373241465,0,0,0,0.723578631752448,0,0.221158519862449,0,0.219385397153973,0,0,1.15425387755696,0,0.23056390438806,0,0.434589487688032,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,1.34802265961354,7.2231988256891,0.702793337176017,0,0,0,0,0,1.53036380815245,0.126373159256976,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0.873633341210151,0.171986032471617,0,0,0,0.0969890164884194,0.176512253383001,1.12990370390266,0,0,0.50648636764703,0,0.0801588202515337,0.213452994739353,0,0,0.114536596165916,0.514784993585894,0,0,0,0,0,0,1.15580235960608,0,0.684526894459965,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0.53746777989381,0,0,0,0,0,0.0984274815147488,0,1.59045937961861,0.817220436669454,0,0,0,0,0,0.303747783290123,0,0.0788057072991982,0.524545881349981,0.739202355635845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0342636508924,0.92562821219883,0.171086837884329,0,0,0.314408610199332,0.414239055347196,0,0,0,0,0,0,0,0,0,0.886068179966986,0.366078794705889,0.3755727921195,0.573409195690071,0.554645257684261,0.683060432355218,1.66018361923477,0,0,1.14186133417987,0.705797459094515,0,0,0,0.934853239388898,0,0.189403005275089,0.251567901752575,0,0.228840068396924,0,0,0,0.159296767163702,0.899606224327209,0.310525913752519,0.414706207840855,0.265841714557995,0,0,0,0,1.27294061441792,0,0,0.796191777397232,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353378291891762,0,0,0,0,0,0.414775308455192,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0.383683113910955,0,0.471797825567689,0,0.33946505990805,0,0,0,0.318004350653419,0,0,2.1160556621441,0.6124909547064,0.321146125482298,0,0.478901577171454,0.82046545696302,0.504143392443436,0.829887029570615,0.322951291263702,0,0,0,0,0,0,0,2.18807844327902,1.0529445968896,0.20170506870352,0,0,0.49131575253029,0.739280431085226,0.0675375846183947,0.781078098613847,1.03343398250592,0.634158101939068,0.546974809018219,0,0.992422356778588,0,0,0,0.336283722218824,0,0,1.68534503309014,0,0,0.679697329768317,0.328863867814245,0,0.111231401892069,0.313972371402056,0.314231179832004,0,1.82631744101899,0,0,0.428859265059938,0.158013611732727,0,1.04314963381548,0,0.414432328326074,0,0,0,0.236664001461131,0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| ||
|short_description=p3@IGDCC4 | |short_description=p3@IGDCC4 | ||
}} | }} |
Latest revision as of 15:09, 18 September 2015
Short description: | p3@IGDCC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_IGDCC4_5end |
Coexpression cluster: | NA |
Association with transcript: | 184bp_to_ENST00000352385, NM_020962, uc002aou.1_5end |
EntrezGene: | IGDCC4 |
HGNC: | 13770 |
UniProt: | Q8TDY8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebellum | 7.71e-11 | 3 |
central nervous system pericyte | 1.32e-08 | 2 |
fibroblast of choroid plexus | 2.33e-08 | 2 |
oligodendrocyte | 5.86e-08 | 7 |
macroglial cell | 5.86e-08 | 7 |
astrocyte | 5.86e-08 | 7 |
oligodendrocyte precursor cell | 5.86e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.80e-15 | 81 |
brain | 6.29e-14 | 68 |
future brain | 6.29e-14 | 68 |
nervous system | 3.14e-13 | 89 |
ectoderm-derived structure | 1.07e-11 | 171 |
ectoderm | 1.07e-11 | 171 |
presumptive ectoderm | 1.07e-11 | 171 |
neural tube | 2.19e-09 | 56 |
neural rod | 2.19e-09 | 56 |
future spinal cord | 2.19e-09 | 56 |
neural keel | 2.19e-09 | 56 |
ecto-epithelium | 1.14e-08 | 104 |
vascular plexus | 2.33e-08 | 2 |
ventricle of nervous system | 2.33e-08 | 2 |
choroid plexus | 2.33e-08 | 2 |
brain ventricle | 2.33e-08 | 2 |
ventricular system of brain | 2.33e-08 | 2 |
ventricular system of central nervous system | 2.33e-08 | 2 |
throat | 2.78e-08 | 2 |
dorsal plus ventral thalamus | 1.60e-07 | 2 |
thalamic complex | 1.60e-07 | 2 |
structure with developmental contribution from neural crest | 1.71e-07 | 132 |
regional part of nervous system | 2.20e-07 | 53 |
regional part of brain | 2.20e-07 | 53 |
neural plate | 2.53e-07 | 82 |
presumptive neural plate | 2.53e-07 | 82 |
posterior neural tube | 2.79e-07 | 15 |
chordal neural plate | 2.79e-07 | 15 |
brain vasculature | 4.79e-07 | 5 |
neurectoderm | 8.04e-07 | 86 |