FFCP PHASE1:Hg19::chr18:66465475..66465514,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:66465475..66465514,+ | |||
|description=CAGE_peak_at_chr18:66465475..66465514,+ | |description=CAGE_peak_at_chr18:66465475..66465514,+ | ||
|id=chr18:66465475..66465514,+ | |id=chr18:66465475..66465514,+ | ||
|ontology_enrichment_celltype=CL:0000055!7.64e-11!180;CL:0000057!1.10e-08!75 | |ontology_enrichment_celltype=CL:0000055!7.64e-11!180;CL:0000057!1.10e-08!75 | ||
|ontology_enrichment_celltype_v019=CL:0002504;1.34e-07;3!CL:1000279;1.34e-07;3!CL:1000280;1.34e-07;3!CL:0002552;1.95e-07;5 | |ontology_enrichment_celltype_v019=CL:0002504;1.34e-07;3!CL:1000279;1.34e-07;3!CL:1000280;1.34e-07;3!CL:0002552;1.95e-07;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0002504,1.35e-07,3;CL:1000279,1.35e-07,3;CL:1000280,1.35e-07,3;CL:0002552,2.45e-07,5 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.01e-18!365;UBERON:0000481!2.49e-18!347;UBERON:0007023!1.16e-15!115;UBERON:0000153!1.70e-14!129;UBERON:0007811!1.70e-14!129;UBERON:0000033!4.74e-14!123;UBERON:0004121!5.87e-13!169;UBERON:0000924!4.06e-12!173;UBERON:0006601!4.06e-12!173;UBERON:0000062!1.80e-11!511;UBERON:0000468!2.18e-11!659;UBERON:0001017!1.09e-10!82;UBERON:0000073!2.58e-10!94;UBERON:0001016!2.58e-10!94;UBERON:0005743!2.69e-10!86;UBERON:0002616!2.86e-10!59;UBERON:0000955!1.17e-09!69;UBERON:0006238!1.17e-09!69;UBERON:0003075!1.53e-09!86;UBERON:0007284!1.53e-09!86;UBERON:0000467!3.79e-09!625;UBERON:0000480!4.80e-09!626;UBERON:0002346!1.56e-08!90;UBERON:0001049!4.66e-08!57;UBERON:0005068!4.66e-08!57;UBERON:0006241!4.66e-08!57;UBERON:0007135!4.66e-08!57;UBERON:0000922!4.79e-08!612;UBERON:0003102!6.97e-08!95;UBERON:0001007!7.74e-08!155;UBERON:0001555!7.74e-08!155;UBERON:0007026!7.74e-08!155;UBERON:0002050!8.12e-08!605;UBERON:0005423!8.12e-08!605;UBERON:0000479!1.33e-07!787;UBERON:0000923!1.77e-07!604;UBERON:0005291!1.77e-07!604;UBERON:0006598!1.77e-07!604;UBERON:0002532!1.77e-07!604;UBERON:0000161!3.18e-07!35 | |ontology_enrichment_uberon=UBERON:0000475!1.01e-18!365;UBERON:0000481!2.49e-18!347;UBERON:0007023!1.16e-15!115;UBERON:0000153!1.70e-14!129;UBERON:0007811!1.70e-14!129;UBERON:0000033!4.74e-14!123;UBERON:0004121!5.87e-13!169;UBERON:0000924!4.06e-12!173;UBERON:0006601!4.06e-12!173;UBERON:0000062!1.80e-11!511;UBERON:0000468!2.18e-11!659;UBERON:0001017!1.09e-10!82;UBERON:0000073!2.58e-10!94;UBERON:0001016!2.58e-10!94;UBERON:0005743!2.69e-10!86;UBERON:0002616!2.86e-10!59;UBERON:0000955!1.17e-09!69;UBERON:0006238!1.17e-09!69;UBERON:0003075!1.53e-09!86;UBERON:0007284!1.53e-09!86;UBERON:0000467!3.79e-09!625;UBERON:0000480!4.80e-09!626;UBERON:0002346!1.56e-08!90;UBERON:0001049!4.66e-08!57;UBERON:0005068!4.66e-08!57;UBERON:0006241!4.66e-08!57;UBERON:0007135!4.66e-08!57;UBERON:0000922!4.79e-08!612;UBERON:0003102!6.97e-08!95;UBERON:0001007!7.74e-08!155;UBERON:0001555!7.74e-08!155;UBERON:0007026!7.74e-08!155;UBERON:0002050!8.12e-08!605;UBERON:0005423!8.12e-08!605;UBERON:0000479!1.33e-07!787;UBERON:0000923!1.77e-07!604;UBERON:0005291!1.77e-07!604;UBERON:0006598!1.77e-07!604;UBERON:0002532!1.77e-07!604;UBERON:0000161!3.18e-07!35 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;2.13e-09;17!UBERON:0005409;2.00e-08;22!UBERON:0006876;3.22e-08;11!UBERON:0000059;4.50e-08;11!UBERON:0001155;1.15e-07;9!UBERON:0005284;4.98e-07;5 | |ontology_enrichment_uberon_v019=UBERON:0000160;2.13e-09;17!UBERON:0005409;2.00e-08;22!UBERON:0006876;3.22e-08;11!UBERON:0000059;4.50e-08;11!UBERON:0001155;1.15e-07;9!UBERON:0005284;4.98e-07;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,1.39e-09,145;UBERON:0001555,1.39e-09,145;UBERON:0007026,1.39e-09,145;UBERON:0000160,1.84e-09,17;UBERON:0004119,2.68e-09,160;UBERON:0000925,2.68e-09,160;UBERON:0006595,2.68e-09,160;UBERON:0006876,2.34e-08,11;UBERON:0000059,3.99e-08,11;UBERON:0003104,7.72e-08,160;UBERON:0009142,7.72e-08,160;UBERON:0011216,9.07e-08,223;UBERON:0001155,1.29e-07,9;UBERON:0004921,2.96e-07,118;UBERON:0005409,3.07e-07,25;UBERON:0003102,3.66e-07,99;UBERON:0002329,4.15e-07,71;UBERON:0003059,4.15e-07,71;UBERON:0007282,4.15e-07,71;UBERON:0004290,4.15e-07,71;UBERON:0009618,4.15e-07,71;UBERON:0005284,4.59e-07,5;UBERON:0003077,6.11e-07,72;UBERON:0007285,6.11e-07,72;UBERON:0005256,7.91e-07,122;UBERON:0007524,8.88e-07,73 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,4.82688776544182,0.662794751455832,0,0,0,0,6.27917396191618,0.612002073732759,0.313454721478088,0.572471974262113,0.410623275218653,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378139268656271,0,0,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,0.132409180813219,0,0,0,0,0,1.55605517699883,0.269421344139376,0.326923806226917,3.48122083583342,4.03323147135999,0.468642863667593,0,0,0,1.05691048779388,1.13311061057692,1.12360645361799,10.0035543914898,1.10550885580591,10.9525328046311,5.94001428641027,0.247266929278557,1.82032272387605,0.718618141816238,1.17835279767846,0.875829639103749,1.38532057742091,0,0,0.150238058906597,0.226864366320042,0,1.70845911054854,0.635795703478686,0,0.206105058476878,6.95629458123199,8.56137539125313,0,0.0974370051611986,0.757301322732344,1.84099797284599,7.43571861366535,1.06502877754984,0.302256294682921,0.339121184620975,0,0,0,0,0,0,0,0,0,1.56449532329816,0,0,0.464367928031979,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0.590789906681404,0,0,1.71567810298526,0,0,0,0,1.3032332212413,1.03993478527958,0,0.579652024875384,0.939269553886573,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0.36669142910475,1.29271715757778,0,0.845302752556,0.26593811658487,0,0.514414748524284,0,0,2.14466990487221,2.17048642156577,0.823240336780769,0.325736184293735,1.77695974371273,0,0,0,0,0,0,0,0,0,0,0.144781306667579,1.84928690295345,0,0,0,0,0,0.76228387266739,1.30139853857622,0,0,0.637938751653163,0,0,0,5.03035116048474,5.50187573165645,0.813795071099207,0,0.178428988797162,0,0.234282829985426,0.300946099727719,0,0,0,0,3.5622281931914,0.979005787313703,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0.160853921143607,0,0,0,0.164254312027618,1.03850885836724,0.116210378459959,0,0,0,4.47776347841966,0.182091168006717,3.01586154406675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.96456801335184,0,0.165018999841176,0,0,0,0.580024309752732,0.770243085573222,2.14905144616581,0.964856007391714,8.1639386099888,2.17525040871343,0.596586391912706,1.33548053470106,0,0,0,0,0,0,0,0,0,0,0,0,5.21021717103534,1.58189712359363,0.38126038784765,0.255897791311334,8.13084077264449,0,0,5.21630126991613,7.68703683260953,4.47687128913608,0,0,0,0.48763373908959,0,0,7.6439950388472,4.10075752665767,0,0,0,0,1.15755106853338,9.83842128069949,0,0.30982349809975,0,0.143411352204052,0.196498082026242,0,2.12856638442359,0,0,1.51789269506286,4.54915136318478,0,0,0,5.83691564816031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.924843963529383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,1.10513566212459,0,2.96579179256249,0,0,0,0,0,0.887790650732402,0,0,0,0,0,0,0,0.724999575434793,0,0.254253650292766,0,0,0,0.868124974666461,0,0.120596438625408,1.52581736317083,0.221158519862449,0,0.438770794307945,0,0,0.461701551022782,0,0,0,0,0,0,0,0,0.31396051279005,0,0,0,0,0,0,0,0,0,0,0,1.76915129006678,1.22206028986725,0,0,0,0,1.60515529459758,0.468528891450678,0,0,0,0.394584402849391,2.41981432097328,0.30607276163049,3.09614240179591,0,0,0,1.65495977937749,0.627865836814451,1.19472429772959,0,0,0,0,0,2.27144668714639,0,0,0,0,1.16386819786103,0,4.74559555639118,0,0.19871461170299,0.253243183823515,0,0,2.34798294213288,0,0,0,0,0,0,0,0,0,2.75395187618069,0.288950589901519,0,0.547621515567972,0,0,0,0.558564802544508,0.687481272035051,0,0,0,0.223171457441873,0.470284307407084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,1.41850273138557,0.314727528809989,0.211200673038813,0,0,0,0,0,0,0,0,0,0,0,0,0.439656701034247,0,0.258565912723101,0.39669780522807,0,0,7.36833146717093,14.1483874589699,5.38510771951354,0.992332043623902,0,0,0,0,0.7520696820681,0.306345576763462,0,0,0,0.244052529803926,0.3755727921195,0,0.221858103073705,0.124192805882767,0,0.249960815924213,0,0,0,0,0,0,0.233713309847224,0,1.32582103692562,2.0125432140206,0,0,0.453692771289717,0,0,0.159296767163702,0.449803112163605,0,0,0,0,0.150257608997218,0,0,0.181848659202559,0.644463342254931,0,0,0,0.343395705182793,0,2.52369796457302,0,0,0,0,0,0,0,0,0,0,0,0,0,0.690860683462397,0,0.829550616910385,0,0,0,0.982829546539238,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0.159633859057151,0,0.252071696221718,0,0.161475645631851,1.42769420259154,0,0,0,0,0,6.90359926060101,1.19349733269765,0.451261970095544,0,0.781514011233092,0,0,0,0.0675375846183947,0,0.413373593002368,0.0634158101939068,0.546974809018219,0,1.48863353516788,0,0,0.535701835878287,0.672567444437648,0.606965604236632,2.04895972216168,7.00748724284847,0,6.68803236805932,0.203909198930495,0,0,0.444925607568277,1.02041020705668,0,0,1.82631744101899,0,0,1.42953088353313,0,0,0.173858272302579,0,0.20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| ||
|short_description=p@chr18:66465475..66465514,+ | |short_description=p@chr18:66465475..66465514,+ | ||
}} | }} |
Latest revision as of 01:58, 26 July 2015
Short description: | p@chr18:66465475..66465514, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:66465475..66465514, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
enteric smooth muscle cell | 1.35e-07 | 3 |
smooth muscle cell of large intestine | 1.35e-07 | 3 |
smooth muscle cell of colon | 1.35e-07 | 3 |
fibroblast of gingiva | 2.45e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
digestive system | 1.39e-09 | 145 |
digestive tract | 1.39e-09 | 145 |
primitive gut | 1.39e-09 | 145 |
intestine | 1.84e-09 | 17 |
endoderm-derived structure | 2.68e-09 | 160 |
endoderm | 2.68e-09 | 160 |
presumptive endoderm | 2.68e-09 | 160 |
vasculature of organ | 2.34e-08 | 11 |
large intestine | 3.99e-08 | 11 |
mesenchyme | 7.72e-08 | 160 |
entire embryonic mesenchyme | 7.72e-08 | 160 |
organ system subdivision | 9.07e-08 | 223 |
colon | 1.29e-07 | 9 |
subdivision of digestive tract | 2.96e-07 | 118 |
gastrointestinal system | 3.07e-07 | 25 |
surface structure | 3.66e-07 | 99 |
somite | 4.15e-07 | 71 |
presomitic mesoderm | 4.15e-07 | 71 |
presumptive segmental plate | 4.15e-07 | 71 |
dermomyotome | 4.15e-07 | 71 |
trunk paraxial mesoderm | 4.15e-07 | 71 |
brain vasculature | 4.59e-07 | 5 |
paraxial mesoderm | 6.11e-07 | 72 |
presumptive paraxial mesoderm | 6.11e-07 | 72 |
trunk mesenchyme | 7.91e-07 | 122 |
dense mesenchyme tissue | 8.88e-07 | 73 |