FFCP PHASE1:Hg19::chr2:216284007..216284022,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:216284007..216284022,+ | |||
|coexpression_cluster_id=C79 | |coexpression_cluster_id=C79 | ||
|description=CAGE_peak_at_chr2:216284007..216284022,+ | |description=CAGE_peak_at_chr2:216284007..216284022,+ | ||
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|ontology_enrichment_celltype=CL:0000055!2.25e-30!180;CL:0000057!3.15e-25!75;CL:0002371!1.23e-22!591;CL:0000144!1.30e-20!625;CL:0000548!2.82e-16!679;CL:0000004!2.82e-16!679;CL:0000255!2.82e-16!679;CL:0000012!8.83e-16!682;CL:0000048!1.01e-13!430;CL:0000723!2.10e-13!436;CL:0000034!2.13e-12!444;CL:0000183!1.08e-11!59;CL:0000680!1.67e-11!57;CL:0000056!1.67e-11!57;CL:0000355!1.67e-11!57;CL:0002620!7.79e-11!23;CL:0000187!2.78e-10!54;CL:0000003!4.82e-10!722;CL:0000393!7.80e-09!60;CL:0000211!7.80e-09!60;CL:0002334!1.31e-08!12;CL:0000220!2.80e-08!246;CL:0002321!5.65e-08!248;CL:0002320!1.37e-07!365;CL:0000222!3.66e-07!119;CL:0000192!6.63e-07!42;CL:0000514!6.63e-07!42 | |ontology_enrichment_celltype=CL:0000055!2.25e-30!180;CL:0000057!3.15e-25!75;CL:0002371!1.23e-22!591;CL:0000144!1.30e-20!625;CL:0000548!2.82e-16!679;CL:0000004!2.82e-16!679;CL:0000255!2.82e-16!679;CL:0000012!8.83e-16!682;CL:0000048!1.01e-13!430;CL:0000723!2.10e-13!436;CL:0000034!2.13e-12!444;CL:0000183!1.08e-11!59;CL:0000680!1.67e-11!57;CL:0000056!1.67e-11!57;CL:0000355!1.67e-11!57;CL:0002620!7.79e-11!23;CL:0000187!2.78e-10!54;CL:0000003!4.82e-10!722;CL:0000393!7.80e-09!60;CL:0000211!7.80e-09!60;CL:0002334!1.31e-08!12;CL:0000220!2.80e-08!246;CL:0002321!5.65e-08!248;CL:0002320!1.37e-07!365;CL:0000222!3.66e-07!119;CL:0000192!6.63e-07!42;CL:0000514!6.63e-07!42 | ||
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|ontology_enrichment_celltype_v019_2=CL:0000057,9.62e-25,76;CL:0000048,2.28e-17,427;CL:0000723,1.30e-16,433;CL:0000034,1.21e-15,441;CL:0002320,9.29e-15,361;CL:0000349,3.91e-12,19;CL:0000134,5.33e-12,354;CL:0002620,2.33e-10,23;CL:0000219,8.20e-10,386;CL:0002334,2.13e-09,12;CL:0002570,7.69e-07,8;CL:0002494,7.75e-07,16;CL:0002569,7.87e-07,6 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.92e-15!83;UBERON:0002329!1.92e-15!83;UBERON:0003077!1.92e-15!83;UBERON:0003059!1.92e-15!83;UBERON:0007282!1.92e-15!83;UBERON:0009618!1.92e-15!83;UBERON:0007285!1.92e-15!83;UBERON:0004290!1.87e-13!70;UBERON:0000486!2.70e-13!82;UBERON:0005256!4.76e-13!143;UBERON:0002199!4.28e-10!45;UBERON:0002416!4.28e-10!45;UBERON:0001134!8.58e-10!61;UBERON:0002036!8.58e-10!61;UBERON:0003082!8.58e-10!61;UBERON:0002385!1.36e-09!63;UBERON:0001015!1.36e-09!63;UBERON:0000383!1.36e-09!63;UBERON:0002097!1.96e-09!40;UBERON:0003102!5.04e-09!95;UBERON:0000478!6.13e-09!24;UBERON:0004923!8.00e-09!57;UBERON:0003914!9.60e-09!118;UBERON:0004872!1.90e-08!84;UBERON:0002100!1.59e-07!216;UBERON:0001637!1.96e-07!42;UBERON:0003509!1.96e-07!42;UBERON:0004572!1.96e-07!42;UBERON:0002384!1.98e-07!375;UBERON:0005631!2.18e-07!14;UBERON:0000158!2.18e-07!14;UBERON:0000490!2.88e-07!138 | |ontology_enrichment_uberon=UBERON:0000914!1.92e-15!83;UBERON:0002329!1.92e-15!83;UBERON:0003077!1.92e-15!83;UBERON:0003059!1.92e-15!83;UBERON:0007282!1.92e-15!83;UBERON:0009618!1.92e-15!83;UBERON:0007285!1.92e-15!83;UBERON:0004290!1.87e-13!70;UBERON:0000486!2.70e-13!82;UBERON:0005256!4.76e-13!143;UBERON:0002199!4.28e-10!45;UBERON:0002416!4.28e-10!45;UBERON:0001134!8.58e-10!61;UBERON:0002036!8.58e-10!61;UBERON:0003082!8.58e-10!61;UBERON:0002385!1.36e-09!63;UBERON:0001015!1.36e-09!63;UBERON:0000383!1.36e-09!63;UBERON:0002097!1.96e-09!40;UBERON:0003102!5.04e-09!95;UBERON:0000478!6.13e-09!24;UBERON:0004923!8.00e-09!57;UBERON:0003914!9.60e-09!118;UBERON:0004872!1.90e-08!84;UBERON:0002100!1.59e-07!216;UBERON:0001637!1.96e-07!42;UBERON:0003509!1.96e-07!42;UBERON:0004572!1.96e-07!42;UBERON:0002384!1.98e-07!375;UBERON:0005631!2.18e-07!14;UBERON:0000158!2.18e-07!14;UBERON:0000490!2.88e-07!138 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;3.34e-10;24!UBERON:0002384;7.14e-09;198!UBERON:0004457;2.43e-08;9!UBERON:0000042;2.43e-08;9!UBERON:0002199;3.24e-08;46!UBERON:0002416;3.24e-08;46!UBERON:0003104;7.09e-08;7!UBERON:0009142;7.09e-08;7!UBERON:0002097;7.63e-08;41!UBERON:0003688;1.76e-07;6!UBERON:0002358;1.76e-07;6!UBERON:0003684;1.76e-07;6!UBERON:0001178;1.76e-07;6!UBERON:0001013;3.57e-07;14!UBERON:0004905;8.64e-07;8!UBERON:0000982;8.64e-07;8!UBERON:0004770;8.64e-07;8!UBERON:0003102;8.71e-07;50!UBERON:0003422;9.59e-07;6 | |ontology_enrichment_uberon_v019=UBERON:0000478;3.34e-10;24!UBERON:0002384;7.14e-09;198!UBERON:0004457;2.43e-08;9!UBERON:0000042;2.43e-08;9!UBERON:0002199;3.24e-08;46!UBERON:0002416;3.24e-08;46!UBERON:0003104;7.09e-08;7!UBERON:0009142;7.09e-08;7!UBERON:0002097;7.63e-08;41!UBERON:0003688;1.76e-07;6!UBERON:0002358;1.76e-07;6!UBERON:0003684;1.76e-07;6!UBERON:0001178;1.76e-07;6!UBERON:0001013;3.57e-07;14!UBERON:0004905;8.64e-07;8!UBERON:0000982;8.64e-07;8!UBERON:0004770;8.64e-07;8!UBERON:0003102;8.71e-07;50!UBERON:0003422;9.59e-07;6 | ||
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| ||
|short_description=p@chr2:216284007..216284022,+ | |short_description=p@chr2:216284007..216284022,+ | ||
}} | }} |
Latest revision as of 06:13, 29 July 2015
Short description: | p@chr2:216284007..216284022, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:216284007..216284022, + |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.62e-25 | 76 |
multi fate stem cell | 2.28e-17 | 427 |
somatic stem cell | 1.30e-16 | 433 |
stem cell | 1.21e-15 | 441 |
connective tissue cell | 9.29e-15 | 361 |
extraembryonic cell | 3.91e-12 | 19 |
mesenchymal cell | 5.33e-12 | 354 |
skin fibroblast | 2.33e-10 | 23 |
motile cell | 8.20e-10 | 386 |
preadipocyte | 2.13e-09 | 12 |
mesenchymal stem cell of adipose | 7.69e-07 | 8 |
cardiocyte | 7.75e-07 | 16 |
mesenchymal stem cell of umbilical cord | 7.87e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 9.89e-15 | 371 |
integument | 1.73e-11 | 46 |
integumental system | 1.73e-11 | 46 |
skin of body | 4.57e-10 | 41 |
extraembryonic structure | 5.56e-10 | 24 |
mesoderm | 1.73e-09 | 315 |
mesoderm-derived structure | 1.73e-09 | 315 |
presumptive mesoderm | 1.73e-09 | 315 |
dense mesenchyme tissue | 1.16e-08 | 73 |
epithelial vesicle | 1.61e-08 | 78 |
somite | 2.60e-08 | 71 |
presomitic mesoderm | 2.60e-08 | 71 |
presumptive segmental plate | 2.60e-08 | 71 |
dermomyotome | 2.60e-08 | 71 |
trunk paraxial mesoderm | 2.60e-08 | 71 |
organ component layer | 3.97e-08 | 66 |
paraxial mesoderm | 4.45e-08 | 72 |
presumptive paraxial mesoderm | 4.45e-08 | 72 |
multilaminar epithelium | 7.25e-08 | 83 |
omentum | 1.51e-07 | 6 |
peritoneum | 1.51e-07 | 6 |
abdominal cavity | 1.51e-07 | 6 |
visceral peritoneum | 1.51e-07 | 6 |
adipose tissue | 3.94e-07 | 14 |
mesenchyme of umbilical cord | 7.87e-07 | 6 |