FFCP PHASE1:Hg19::chr1:28764653..28764670,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:28764653..28764670,+
|short_description=p2@PHACTR4
|description=CAGE_peak_2_at_PHACTR4_5end
|association_with_transcript=0bp_to_NM_023923,uc001bpy.2_5end
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=65979 | |EntrezGene=65979 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25793 | |HGNC=25793 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IZ21 | |UniProt=Q8IZ21 | ||
|association_with_transcript=0bp_to_NM_023923,uc001bpy.2_5end | |||
|cluster_id=chr1:28764653..28764670,+ | |||
|coexpression_cluster_id=C1474 | |||
|description=CAGE_peak_2_at_PHACTR4_5end | |||
|id=chr1:28764653..28764670,+ | |||
|ontology_enrichment_celltype=CL:0000213!4.63e-14!57;CL:0000215!4.63e-14!57;CL:0000076!8.48e-13!62;CL:0002139!2.90e-11!24;CL:0000066!1.87e-10!254;CL:0000071!4.16e-10!18;CL:0002546!4.16e-10!18;CL:0000115!4.31e-10!35;CL:0000557!3.52e-09!71;CL:0002078!3.97e-09!44;CL:0000839!1.48e-07!70;CL:0002009!6.11e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.27e-11;24!CL:0000071;1.49e-10;18!CL:0000473;2.94e-09;39!CL:0000234;2.94e-09;39!CL:0000860;4.23e-09;33!CL:0002057;4.23e-09;33!CL:0000115;7.01e-09;36!CL:0000213;3.53e-08;58!CL:0000215;3.53e-08;58!CL:0000076;3.61e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000213,1.27e-14,58;CL:0000215,1.27e-14,58;CL:0000076,1.03e-13,63;CL:0002139,1.02e-11,24;CL:0000557,1.61e-10,67;CL:0000071,1.66e-10,18;CL:0002546,1.66e-10,18;CL:0000115,1.71e-10,36;CL:0000066,5.30e-10,253;CL:0002078,4.89e-09,45;CL:0000839,8.41e-09,66;CL:0002009,5.06e-08,61;CL:0000763,3.15e-07,108;CL:0000049,3.15e-07,108;CL:0002194,3.61e-07,59;CL:0000576,3.61e-07,59;CL:0000040,3.61e-07,59;CL:0000559,3.61e-07,59 | |||
|ontology_enrichment_development_v019=CL:0002546;1.49e-10;18 | |||
|ontology_enrichment_disease=DOID:305!7.37e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.45e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000926!4.00e-12!448;UBERON:0004120!4.00e-12!448;UBERON:0006603!4.00e-12!448;UBERON:0000487!1.77e-10!22;UBERON:0001474!3.72e-10!86;UBERON:0002371!3.95e-10!80;UBERON:0001986!4.16e-10!18;UBERON:0004638!4.16e-10!18;UBERON:0004852!4.16e-10!18;UBERON:0004765!6.43e-10!101;UBERON:0001434!6.43e-10!101;UBERON:0006914!2.05e-09!25;UBERON:0000062!2.55e-09!511;UBERON:0002405!2.52e-08!115;UBERON:0000480!6.94e-08!626;UBERON:0000467!1.10e-07!625;UBERON:0000468!3.23e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0000487;6.42e-11;22!UBERON:0004638;1.49e-10;18!UBERON:0001986;1.49e-10;18!UBERON:0004852;1.49e-10;18!UBERON:0006914;1.06e-09;25!UBERON:0000490;7.53e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002405,4.47e-12,93;UBERON:0002371,1.63e-11,76;UBERON:0001474,2.25e-11,82;UBERON:0000487,6.80e-11,22;UBERON:0004765,8.23e-11,90;UBERON:0004638,1.66e-10,18;UBERON:0001986,1.66e-10,18;UBERON:0004852,1.66e-10,18;UBERON:0001434,5.34e-10,100;UBERON:0006914,9.96e-10,25;UBERON:0003081,6.07e-07,203 | |||
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| ||
|short_description=p2@PHACTR4 | |||
}} | }} |
Latest revision as of 10:23, 17 September 2015
Short description: | p2@PHACTR4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PHACTR4_5end |
Coexpression cluster: | C1474_Mast_CD34_immature_CD14_CD133_pleomorphic_granulocyte |
Association with transcript: | 0bp_to_NM_023923, uc001bpy.2_5end |
EntrezGene: | PHACTR4 |
HGNC: | 25793 |
UniProt: | Q8IZ21 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lining cell | 1.27e-14 | 58 |
barrier cell | 1.27e-14 | 58 |
squamous epithelial cell | 1.03e-13 | 63 |
endothelial cell of vascular tree | 1.02e-11 | 24 |
granulocyte monocyte progenitor cell | 1.61e-10 | 67 |
blood vessel endothelial cell | 1.66e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.66e-10 | 18 |
endothelial cell | 1.71e-10 | 36 |
epithelial cell | 5.30e-10 | 253 |
meso-epithelial cell | 4.89e-09 | 45 |
myeloid lineage restricted progenitor cell | 8.41e-09 | 66 |
macrophage dendritic cell progenitor | 5.06e-08 | 61 |
myeloid cell | 3.15e-07 | 108 |
common myeloid progenitor | 3.15e-07 | 108 |
monopoietic cell | 3.61e-07 | 59 |
monocyte | 3.61e-07 | 59 |
monoblast | 3.61e-07 | 59 |
promonocyte | 3.61e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
immune system | 4.47e-12 | 93 |
bone marrow | 1.63e-11 | 76 |
bone element | 2.25e-11 | 82 |
simple squamous epithelium | 6.80e-11 | 22 |
skeletal element | 8.23e-11 | 90 |
blood vessel endothelium | 1.66e-10 | 18 |
endothelium | 1.66e-10 | 18 |
cardiovascular system endothelium | 1.66e-10 | 18 |
skeletal system | 5.34e-10 | 100 |
squamous epithelium | 9.96e-10 | 25 |
lateral plate mesoderm | 6.07e-07 | 203 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.45e-07 | 106 |