FFCP PHASE1:Hg19::chr1:55436540..55436544,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:55436540..55436544,-
|short_description=p@chr1:55436540..55436544,-
|description=CAGE_peak_at_chr1:55436540..55436544,-
|association_with_transcript=NA
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:55436540..55436544,- | |||
|coexpression_cluster_id=C186 | |||
|description=CAGE_peak_at_chr1:55436540..55436544,- | |||
|id=chr1:55436540..55436544,- | |||
|ontology_enrichment_celltype=CL:0000066!2.09e-24!254;CL:0002368!1.70e-21!13;CL:0002159!3.28e-20!13;CL:0002076!4.33e-20!43;CL:0000076!1.75e-18!62;CL:0000223!2.56e-15!59;CL:0002202!8.56e-15!9;CL:0002632!8.56e-15!9;CL:0000244!1.92e-14!4;CL:0000731!1.92e-14!4;CL:0002328!3.23e-12!3;CL:0000068!4.34e-12!3;CL:0000069!4.34e-12!3;CL:0000307!4.34e-12!3;CL:0000377!4.34e-12!3;CL:0000362!4.68e-11!8;CL:0002077!1.43e-10!33;CL:0000240!2.31e-09!6;CL:0000311!2.31e-09!6;CL:0000079!2.31e-09!6;CL:0000237!2.31e-09!6;CL:0000036!2.31e-09!6;CL:0000357!2.31e-09!6;CL:0000114!2.31e-09!6;CL:0000317!2.24e-08!2;CL:1000448!2.24e-08!2;CL:0002308!2.24e-08!2;CL:0002140!2.24e-08!2;CL:0000575!7.26e-08!2;CL:0002251!2.25e-07!21;CL:0000063!3.73e-07!578;CL:0000312!6.86e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002328;5.43e-28;3!CL:0002202;1.44e-25;9!CL:0002632;1.44e-25;9!CL:0002368;5.55e-25;13!CL:0000317;1.03e-18;2!CL:1000448;1.03e-18;2!CL:0002308;1.03e-18;2!CL:0002140;1.03e-18;2!CL:0000307;1.50e-13;3!CL:0002076;9.65e-11;42!CL:1001319;1.65e-10;1!CL:1000600;1.65e-10;1!CL:0000076;2.09e-10;63!CL:0000362;1.52e-09;9!CL:0000622;4.86e-08;5!CL:0000154;7.75e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002328,4.32e-28,3;CL:0002202,1.21e-25,9;CL:0002632,1.21e-25,9;CL:0002368,5.11e-25,13;CL:0000076,3.70e-22,63;CL:0000317,1.62e-18,2;CL:1000448,1.62e-18,2;CL:0002308,1.62e-18,2;CL:0002140,1.62e-18,2;CL:0002076,1.65e-16,42;CL:0000066,2.64e-14,253;CL:0000068,1.41e-13,3;CL:0000069,1.41e-13,3;CL:0000307,1.41e-13,3;CL:0000377,1.41e-13,3;CL:0000223,1.32e-11,58;CL:1001319,1.43e-10,1;CL:1000600,1.43e-10,1;CL:0000362,1.78e-09,9;CL:0000622,5.81e-08,5;CL:0000154,8.98e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000377;1.50e-13;3 | |||
|ontology_enrichment_disease=DOID:1749!2.06e-36!14;DOID:305!4.01e-12!106;DOID:0050687!1.37e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.32e-63;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.04e-63,14;DOID:305,1.09e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0005910!9.27e-21!6;UBERON:0003729!3.25e-18!5;UBERON:0000344!5.11e-18!12;UBERON:0000365!6.15e-18!5;UBERON:0003343!1.88e-15!4;UBERON:0004785!1.88e-15!4;UBERON:0004815!3.23e-12!3;UBERON:0002031!3.23e-12!3;UBERON:0004119!3.02e-11!169;UBERON:0000925!3.02e-11!169;UBERON:0006595!3.02e-11!169;UBERON:0002185!2.94e-09!4;UBERON:0007196!3.08e-09!14;UBERON:0001558!3.08e-09!14;UBERON:0001004!4.19e-09!72;UBERON:0002419!2.24e-08!2;UBERON:0007771!2.24e-08!2;UBERON:0003297!2.24e-08!2;UBERON:0001821!2.24e-08!2;UBERON:0003487!2.24e-08!2;UBERON:0001820!2.24e-08!2;UBERON:0005089!2.24e-08!2;UBERON:0005088!2.24e-08!2;UBERON:0000161!3.97e-08!35;UBERON:0003102!1.32e-07!95;UBERON:0000065!2.62e-07!53;UBERON:0005911!2.95e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;5.43e-28;3!UBERON:0002031;5.43e-28;3!UBERON:0003343;1.38e-21;4!UBERON:0004785;1.38e-21;4!UBERON:0002419;1.03e-18;2!UBERON:0007771;1.03e-18;2!UBERON:0003297;1.03e-18;2!UBERON:0001821;1.03e-18;2!UBERON:0003487;1.03e-18;2!UBERON:0001820;1.03e-18;2!UBERON:0002185;4.62e-17;5!UBERON:0007196;2.57e-15;15!UBERON:0001558;2.57e-15;15!UBERON:0000974;1.35e-14;6!UBERON:0000485;2.36e-12;7!UBERON:0004645;1.65e-10;1!UBERON:0001256;1.65e-10;1!UBERON:0001259;1.65e-10;1!UBERON:0000997;3.15e-10;1!UBERON:0005056;3.15e-10;1!UBERON:0004176;3.15e-10;1!UBERON:0000365;3.78e-08;5!UBERON:0000344;1.26e-07;20!UBERON:0003729;5.29e-07;13!UBERON:0005910;6.29e-07;6!UBERON:0005178;6.73e-07;34!UBERON:0002224;6.73e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,4.32e-28,3;UBERON:0002031,4.32e-28,3;UBERON:0003343,1.64e-21,4;UBERON:0004785,1.64e-21,4;UBERON:0002419,1.62e-18,2;UBERON:0007771,1.62e-18,2;UBERON:0003297,1.62e-18,2;UBERON:0001821,1.62e-18,2;UBERON:0003487,1.62e-18,2;UBERON:0001820,1.62e-18,2;UBERON:0005089,1.62e-18,2;UBERON:0005088,1.62e-18,2;UBERON:0002185,4.04e-17,5;UBERON:0007196,2.31e-15,15;UBERON:0001558,2.31e-15,15;UBERON:0004645,1.43e-10,1;UBERON:0001256,1.43e-10,1;UBERON:0001259,1.43e-10,1;UBERON:0000997,2.74e-10,1;UBERON:0005056,2.74e-10,1;UBERON:0000485,9.29e-10,9;UBERON:0000974,6.16e-09,10;UBERON:0001004,8.04e-09,74;UBERON:0000365,3.27e-08,5;UBERON:0000065,1.25e-07,54;UBERON:0000344,1.28e-07,20;UBERON:0003729,5.57e-07,13;UBERON:0005910,5.58e-07,6 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,3.0120591877825,3.32778609150109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658501712451753,2.24803506515239,0.100528972411631,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14853107599234,1.30012049207304,0,0,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,1.27612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48111056362756,4.69211592875051,7.62236894029258,0,0.43050537267123,1.68471475667626,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0.123084805461069,0,0.629078458031288,0,0,0,0,0,0,0,0,0,0,0,3.75518379342149,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66587075604442,1.56706571844725,0,0,0,0,0,0,0,0,0,0,0,0,0.721429382263803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0,0,0,0.137539436597234,0,0,0.77380195455795,0,0,0,0,0,0,0.959575986597226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845248493434508,0,0,0,0,0,0.419638523158333,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392590874004102,7.43209257090764,2.20114318226015,4.50550097986319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0.118193840883968,0.111231401892069,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487671699929078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96409332466223,21.5265871746572,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,2.84911440138411,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:55436540..55436544,- | |||
}} | }} |
Latest revision as of 09:16, 28 July 2015
Short description: | p@chr1:55436540..55436544, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:55436540..55436544, - |
Coexpression cluster: | C186_squamous_papillotubular_large_Tracheal_oral_Small_epidermoid |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bronchial epithelial cell | 4.32e-28 | 3 |
epithelial cell of tracheobronchial tree | 1.21e-25 | 9 |
epithelial cell of lower respiratory tract | 1.21e-25 | 9 |
respiratory epithelial cell | 5.11e-25 | 13 |
squamous epithelial cell | 3.70e-22 | 63 |
sebum secreting cell | 1.62e-18 | 2 |
epithelial cell of sweat gland | 1.62e-18 | 2 |
epithelial cell of skin gland | 1.62e-18 | 2 |
acinar cell of sebaceous gland | 1.62e-18 | 2 |
endo-epithelial cell | 1.65e-16 | 42 |
epithelial cell | 2.64e-14 | 253 |
duct epithelial cell | 1.41e-13 | 3 |
branched duct epithelial cell | 1.41e-13 | 3 |
tracheal epithelial cell | 1.41e-13 | 3 |
tracheoblast | 1.41e-13 | 3 |
endodermal cell | 1.32e-11 | 58 |
bladder cell | 1.43e-10 | 1 |
lower urinary tract cell | 1.43e-10 | 1 |
epidermal cell | 1.78e-09 | 9 |
acinar cell | 5.81e-08 | 5 |
protein secreting cell | 8.98e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 4.32e-28 | 3 |
epithelium of bronchus | 4.32e-28 | 3 |
mucosa of oral region | 1.64e-21 | 4 |
respiratory system mucosa | 1.64e-21 | 4 |
skin gland | 1.62e-18 | 2 |
epidermis gland | 1.62e-18 | 2 |
gland of integumental system | 1.62e-18 | 2 |
sebaceous gland | 1.62e-18 | 2 |
skin sebaceous gland | 1.62e-18 | 2 |
sweat gland | 1.62e-18 | 2 |
sweat gland placode | 1.62e-18 | 2 |
sebaceous gland placode | 1.62e-18 | 2 |
bronchus | 4.04e-17 | 5 |
tracheobronchial tree | 2.31e-15 | 15 |
lower respiratory tract | 2.31e-15 | 15 |
urinary bladder urothelium | 1.43e-10 | 1 |
wall of urinary bladder | 1.43e-10 | 1 |
mucosa of urinary bladder | 1.43e-10 | 1 |
mammalian vulva | 2.74e-10 | 1 |
external female genitalia | 2.74e-10 | 1 |
simple columnar epithelium | 9.29e-10 | 9 |
neck | 6.16e-09 | 10 |
respiratory system | 8.04e-09 | 74 |
urothelium | 3.27e-08 | 5 |
respiratory tract | 1.25e-07 | 54 |
mucosa | 1.28e-07 | 20 |
mouth mucosa | 5.57e-07 | 13 |
transitional epithelium | 5.58e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.04e-63 | 14 |
carcinoma | 1.09e-08 | 106 |