FFCP PHASE1:Hg19::chr19:45582563..45582581,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79760 | |EntrezGene=79760 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20045 | |HGNC=20045 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H840 | |UniProt=Q9H840 | ||
|association_with_transcript=33bp_to_ENST00000270257,ENST00000391951,NM_001007269,NM_024707,uc002paq.1,uc002par.1_5end | |association_with_transcript=33bp_to_ENST00000270257,ENST00000391951,NM_001007269,NM_024707,uc002paq.1,uc002par.1_5end | ||
|cluster_id=chr19:45582563..45582581,+ | |||
|description=CAGE_peak_2_at_GEMIN7_5end | |description=CAGE_peak_2_at_GEMIN7_5end | ||
|id=chr19:45582563..45582581,+ | |id=chr19:45582563..45582581,+ | ||
|ontology_enrichment_celltype=CL:0000012!7.74e-19!682;CL:0002321!5.85e-18!248;CL:0000548!6.86e-18!679;CL:0000004!6.86e-18!679;CL:0000255!6.86e-18!679;CL:0000220!4.25e-17!246;CL:0000222!2.81e-14!119;CL:0000144!6.30e-14!625;CL:0000066!1.02e-13!254;CL:0000183!3.97e-11!59;CL:0000192!1.34e-10!42;CL:0000514!1.34e-10!42;CL:0000393!1.42e-10!60;CL:0000211!1.42e-10!60;CL:0000003!1.66e-10!722;CL:0000359!6.43e-10!32;CL:0000187!2.86e-09!54;CL:0000680!1.00e-08!57;CL:0000056!1.00e-08!57;CL:0000355!1.00e-08!57;CL:0002371!1.66e-07!591 | |ontology_enrichment_celltype=CL:0000012!7.74e-19!682;CL:0002321!5.85e-18!248;CL:0000548!6.86e-18!679;CL:0000004!6.86e-18!679;CL:0000255!6.86e-18!679;CL:0000220!4.25e-17!246;CL:0000222!2.81e-14!119;CL:0000144!6.30e-14!625;CL:0000066!1.02e-13!254;CL:0000183!3.97e-11!59;CL:0000192!1.34e-10!42;CL:0000514!1.34e-10!42;CL:0000393!1.42e-10!60;CL:0000211!1.42e-10!60;CL:0000003!1.66e-10!722;CL:0000359!6.43e-10!32;CL:0000187!2.86e-09!54;CL:0000680!1.00e-08!57;CL:0000056!1.00e-08!57;CL:0000355!1.00e-08!57;CL:0002371!1.66e-07!591 | ||
|ontology_enrichment_celltype_v019=CL:0000359;2.33e-10;32!CL:0000192;1.81e-07;43!CL:1000449;5.02e-07;15 | |ontology_enrichment_celltype_v019=CL:0000359;2.33e-10;32!CL:0000192;1.81e-07;43!CL:1000449;5.02e-07;15 | ||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.52e-17,250;CL:0000222,4.08e-14,121;CL:0000359,6.45e-11,32;CL:0000192,2.34e-10,43;CL:0000514,2.34e-10,43;CL:0000066,3.08e-10,253;CL:0000393,4.95e-10,61;CL:0000211,4.95e-10,61;CL:0000187,1.94e-08,55;CL:0000680,4.07e-08,58;CL:0000056,4.07e-08,58;CL:0000355,4.07e-08,58;CL:1000449,2.80e-07,15;CL:0000213,6.42e-07,58;CL:0000215,6.42e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000514;1.81e-07;43 | |ontology_enrichment_development_v019=CL:0000514;1.81e-07;43 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!3.33e-12!79;UBERON:0007798!3.33e-12!79;UBERON:0000055!1.56e-10!69;UBERON:0001637!3.53e-10!42;UBERON:0003509!3.53e-10!42;UBERON:0004572!3.53e-10!42;UBERON:0000490!9.68e-10!138;UBERON:0003914!2.78e-09!118;UBERON:0001981!2.70e-08!60;UBERON:0007500!2.70e-08!60;UBERON:0004537!2.70e-08!60;UBERON:0006965!2.70e-08!60;UBERON:0004573!1.35e-07!33;UBERON:0004571!1.35e-07!33;UBERON:0004872!1.44e-07!84;UBERON:0004535!3.80e-07!110;UBERON:0001134!4.46e-07!61;UBERON:0002036!4.46e-07!61;UBERON:0003082!4.46e-07!61;UBERON:0002100!5.56e-07!216;UBERON:0005256!6.16e-07!143;UBERON:0001009!8.49e-07!113 | |ontology_enrichment_uberon=UBERON:0002049!3.33e-12!79;UBERON:0007798!3.33e-12!79;UBERON:0000055!1.56e-10!69;UBERON:0001637!3.53e-10!42;UBERON:0003509!3.53e-10!42;UBERON:0004572!3.53e-10!42;UBERON:0000490!9.68e-10!138;UBERON:0003914!2.78e-09!118;UBERON:0001981!2.70e-08!60;UBERON:0007500!2.70e-08!60;UBERON:0004537!2.70e-08!60;UBERON:0006965!2.70e-08!60;UBERON:0004573!1.35e-07!33;UBERON:0004571!1.35e-07!33;UBERON:0004872!1.44e-07!84;UBERON:0004535!3.80e-07!110;UBERON:0001134!4.46e-07!61;UBERON:0002036!4.46e-07!61;UBERON:0003082!4.46e-07!61;UBERON:0002100!5.56e-07!216;UBERON:0005256!6.16e-07!143;UBERON:0001009!8.49e-07!113 | ||
|ontology_enrichment_uberon_v019=UBERON:0002049;3.96e-08;75!UBERON:0007798;3.96e-08;75!UBERON:0003914;8.84e-08;74!UBERON:0000055;1.18e-07;65!UBERON:0001637;2.66e-07;42!UBERON:0003509;2.66e-07;42!UBERON:0004572;2.66e-07;42!UBERON:0006555;5.02e-07;15!UBERON:0004819;5.02e-07;15!UBERON:0001285;5.02e-07;15!UBERON:0007684;5.02e-07;15!UBERON:0004573;5.95e-07;33!UBERON:0004571;5.95e-07;33 | |ontology_enrichment_uberon_v019=UBERON:0002049;3.96e-08;75!UBERON:0007798;3.96e-08;75!UBERON:0003914;8.84e-08;74!UBERON:0000055;1.18e-07;65!UBERON:0001637;2.66e-07;42!UBERON:0003509;2.66e-07;42!UBERON:0004572;2.66e-07;42!UBERON:0006555;5.02e-07;15!UBERON:0004819;5.02e-07;15!UBERON:0001285;5.02e-07;15!UBERON:0007684;5.02e-07;15!UBERON:0004573;5.95e-07;33!UBERON:0004571;5.95e-07;33 | ||
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|short_description=p2@GEMIN7 | |short_description=p2@GEMIN7 | ||
}} | }} |
Latest revision as of 15:46, 18 September 2015
Short description: | p2@GEMIN7 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GEMIN7_5end |
Coexpression cluster: | NA |
Association with transcript: | 33bp_to_ENST00000270257, ENST00000391951, NM_001007269, NM_024707, uc002paq.1, uc002par.1_5end |
EntrezGene: | GEMIN7 |
HGNC: | 20045 |
UniProt: | Q9H840 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.52e-17 | 250 |
mesodermal cell | 4.08e-14 | 121 |
vascular associated smooth muscle cell | 6.45e-11 | 32 |
smooth muscle cell | 2.34e-10 | 43 |
smooth muscle myoblast | 2.34e-10 | 43 |
epithelial cell | 3.08e-10 | 253 |
electrically responsive cell | 4.95e-10 | 61 |
electrically active cell | 4.95e-10 | 61 |
muscle cell | 1.94e-08 | 55 |
muscle precursor cell | 4.07e-08 | 58 |
myoblast | 4.07e-08 | 58 |
multi-potent skeletal muscle stem cell | 4.07e-08 | 58 |
epithelial cell of nephron | 2.80e-07 | 15 |
lining cell | 6.42e-07 | 58 |
barrier cell | 6.42e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
vasculature | 4.62e-14 | 78 |
vascular system | 4.62e-14 | 78 |
vessel | 9.26e-13 | 68 |
epithelial tube | 1.23e-11 | 117 |
artery | 1.40e-10 | 42 |
arterial blood vessel | 1.40e-10 | 42 |
arterial system | 1.40e-10 | 42 |
epithelial tube open at both ends | 4.74e-10 | 59 |
blood vessel | 4.74e-10 | 59 |
blood vasculature | 4.74e-10 | 59 |
vascular cord | 4.74e-10 | 59 |
cardiovascular system | 1.78e-09 | 109 |
splanchnic layer of lateral plate mesoderm | 2.26e-09 | 83 |
circulatory system | 8.90e-09 | 112 |
mesenchyme | 3.08e-08 | 160 |
entire embryonic mesenchyme | 3.08e-08 | 160 |
unilaminar epithelium | 3.71e-08 | 148 |
epithelial vesicle | 9.42e-08 | 78 |
systemic artery | 1.19e-07 | 33 |
systemic arterial system | 1.19e-07 | 33 |
nephron epithelium | 2.80e-07 | 15 |
renal tubule | 2.80e-07 | 15 |
nephron tubule | 2.80e-07 | 15 |
nephron | 2.80e-07 | 15 |
uriniferous tubule | 2.80e-07 | 15 |
nephrogenic mesenchyme | 2.80e-07 | 15 |
trunk mesenchyme | 5.00e-07 | 122 |
skeletal muscle tissue | 6.24e-07 | 62 |
striated muscle tissue | 6.24e-07 | 62 |
myotome | 6.24e-07 | 62 |