FFCP PHASE1:Hg19::chr22:33257853..33257865,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7078 | |EntrezGene=7078 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11822 | |HGNC=11822 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=273bp_to_AF035289_5end | |association_with_transcript=273bp_to_AF035289_5end | ||
|cluster_id=chr22:33257853..33257865,+ | |||
|coexpression_cluster_id=C50 | |coexpression_cluster_id=C50 | ||
|description=CAGE_peak_26_at_TIMP3_5end | |description=CAGE_peak_26_at_TIMP3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002541;2.48e-27;3!CL:0000349;1.43e-11;19!CL:0002581;6.05e-10;1!CL:0002591;6.05e-10;1!CL:0002379;6.05e-10;1!CL:0002537;5.21e-08;5 | |ontology_enrichment_celltype_v019=CL:0002541;2.48e-27;3!CL:0000349;1.43e-11;19!CL:0002581;6.05e-10;1!CL:0002591;6.05e-10;1!CL:0002379;6.05e-10;1!CL:0002537;5.21e-08;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0002541,1.91e-27,3;CL:0000349,1.13e-11,19;CL:0002379,3.71e-10,1;CL:0002581,4.06e-10,1;CL:0002591,9.82e-10,1;CL:0002537,4.01e-08,5;CL:0000192,9.91e-07,43;CL:0000514,9.91e-07,43 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4235;2.47e-10;1!DOID:3620;6.05e-10;1!DOID:3565;6.05e-10;1!DOID:2513;6.05e-10;1 | |ontology_enrichment_disease_v019=DOID:4235;2.47e-10;1!DOID:3620;6.05e-10;1!DOID:3565;6.05e-10;1!DOID:2513;6.05e-10;1 | ||
|ontology_enrichment_disease_v019_2=DOID:4235,2.37e-10,1;DOID:3620,3.71e-10,1;DOID:3565,3.71e-10,1;DOID:2513,8.24e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.21e-12!115 | |ontology_enrichment_uberon=UBERON:0007023!1.21e-12!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0003124;2.48e-27;3!UBERON:0000920;2.48e-27;3!UBERON:0005631;4.36e-22;10!UBERON:0000158;4.36e-22;10!UBERON:0002135;2.47e-10;1!UBERON:0001389;6.05e-10;1!UBERON:0000026;6.05e-10;1!UBERON:0008784;6.05e-10;1!UBERON:0006058;6.05e-10;1!UBERON:0003663;6.05e-10;1!UBERON:0004256;6.05e-10;1!UBERON:0004708;6.05e-10;1!UBERON:0002101;6.05e-10;1!UBERON:0004709;6.05e-10;1!UBERON:0002529;6.05e-10;1!UBERON:0010538;6.05e-10;1!UBERON:0003661;6.05e-10;1!UBERON:0010890;6.05e-10;1!UBERON:0002471;6.05e-10;1!UBERON:0001383;6.05e-10;1!UBERON:0010758;6.05e-10;1!UBERON:0010707;6.05e-10;1!UBERON:0000978;6.05e-10;1!UBERON:0002103;6.05e-10;1!UBERON:0001665;6.05e-10;1!UBERON:0003823;6.05e-10;1!UBERON:0000154;6.05e-10;1!UBERON:0010709;6.05e-10;1!UBERON:0000478;3.99e-09;24 | |ontology_enrichment_uberon_v019=UBERON:0003124;2.48e-27;3!UBERON:0000920;2.48e-27;3!UBERON:0005631;4.36e-22;10!UBERON:0000158;4.36e-22;10!UBERON:0002135;2.47e-10;1!UBERON:0001389;6.05e-10;1!UBERON:0000026;6.05e-10;1!UBERON:0008784;6.05e-10;1!UBERON:0006058;6.05e-10;1!UBERON:0003663;6.05e-10;1!UBERON:0004256;6.05e-10;1!UBERON:0004708;6.05e-10;1!UBERON:0002101;6.05e-10;1!UBERON:0004709;6.05e-10;1!UBERON:0002529;6.05e-10;1!UBERON:0010538;6.05e-10;1!UBERON:0003661;6.05e-10;1!UBERON:0010890;6.05e-10;1!UBERON:0002471;6.05e-10;1!UBERON:0001383;6.05e-10;1!UBERON:0010758;6.05e-10;1!UBERON:0010707;6.05e-10;1!UBERON:0000978;6.05e-10;1!UBERON:0002103;6.05e-10;1!UBERON:0001665;6.05e-10;1!UBERON:0003823;6.05e-10;1!UBERON:0000154;6.05e-10;1!UBERON:0010709;6.05e-10;1!UBERON:0000478;3.99e-09;24 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,1.91e-27,3;UBERON:0005631,6.82e-16,14;UBERON:0000158,6.82e-16,14;UBERON:0003124,4.16e-12,7;UBERON:0002135,2.59e-10,1;UBERON:0005418,5.79e-10,1;UBERON:0001389,5.79e-10,1;UBERON:0000026,5.79e-10,1;UBERON:0008784,5.79e-10,1;UBERON:0006058,5.79e-10,1;UBERON:0003663,5.79e-10,1;UBERON:0004256,5.79e-10,1;UBERON:0004708,5.79e-10,1;UBERON:0002101,5.79e-10,1;UBERON:0004709,5.79e-10,1;UBERON:0002529,5.79e-10,1;UBERON:0010538,5.79e-10,1;UBERON:0003661,5.79e-10,1;UBERON:0010890,5.79e-10,1;UBERON:0002471,5.79e-10,1;UBERON:0001383,5.79e-10,1;UBERON:0004357,5.79e-10,1;UBERON:0004347,5.79e-10,1;UBERON:0005420,5.79e-10,1;UBERON:0005732,5.79e-10,1;UBERON:0010758,5.79e-10,1;UBERON:0010707,5.79e-10,1;UBERON:0000978,5.79e-10,1;UBERON:0002103,5.79e-10,1;UBERON:0001665,5.79e-10,1;UBERON:0003823,5.79e-10,1;UBERON:0000154,5.79e-10,1;UBERON:0010709,5.79e-10,1;UBERON:0005733,5.79e-10,1;UBERON:0005730,5.79e-10,1;UBERON:0000478,3.32e-09,24;UBERON:0003498,6.77e-08,5;UBERON:0005985,6.77e-08,5 | |||
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| ||
|short_description=p26@TIMP3 | |short_description=p26@TIMP3 | ||
}} | }} |
Latest revision as of 22:58, 19 September 2015
Short description: | p26@TIMP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_26_at_TIMP3_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | 273bp_to_AF035289_5end |
EntrezGene: | TIMP3 |
HGNC: | 11822 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 1.91e-27 | 3 |
extraembryonic cell | 1.13e-11 | 19 |
meningothelial cell | 3.71e-10 | 1 |
perirenal preadipocyte | 4.06e-10 | 1 |
smooth muscle cell of the pulmonary artery | 9.82e-10 | 1 |
amnion mesenchymal stem cell | 4.01e-08 | 5 |
smooth muscle cell | 9.91e-07 | 43 |
smooth muscle myoblast | 9.91e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 1.91e-27 | 3 |
extraembryonic membrane | 6.82e-16 | 14 |
membranous layer | 6.82e-16 | 14 |
chorion | 4.16e-12 | 7 |
mitral valve | 2.59e-10 | 1 |
hindlimb bud | 5.79e-10 | 1 |
soleus muscle | 5.79e-10 | 1 |
appendage | 5.79e-10 | 1 |
lower limb segment | 5.79e-10 | 1 |
multi-limb segment region | 5.79e-10 | 1 |
hindlimb muscle | 5.79e-10 | 1 |
hindlimb zeugopod muscle | 5.79e-10 | 1 |
paired limb/fin | 5.79e-10 | 1 |
limb | 5.79e-10 | 1 |
pelvic appendage | 5.79e-10 | 1 |
limb segment | 5.79e-10 | 1 |
paired limb/fin segment | 5.79e-10 | 1 |
limb muscle | 5.79e-10 | 1 |
pelvic complex muscle | 5.79e-10 | 1 |
zeugopod | 5.79e-10 | 1 |
muscle of leg | 5.79e-10 | 1 |
paired limb/fin bud | 5.79e-10 | 1 |
limb bud | 5.79e-10 | 1 |
pelvic appendage bud | 5.79e-10 | 1 |
limb/fin field | 5.79e-10 | 1 |
subdivision of organism along appendicular axis | 5.79e-10 | 1 |
appendage girdle complex | 5.79e-10 | 1 |
leg | 5.79e-10 | 1 |
hindlimb | 5.79e-10 | 1 |
triceps surae | 5.79e-10 | 1 |
hindlimb zeugopod | 5.79e-10 | 1 |
posterior region of body | 5.79e-10 | 1 |
pelvic complex | 5.79e-10 | 1 |
limb field | 5.79e-10 | 1 |
hindlimb/pelvic fin field | 5.79e-10 | 1 |
extraembryonic structure | 3.32e-09 | 24 |
heart blood vessel | 6.77e-08 | 5 |
coronary vessel | 6.77e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
spindle cell sarcoma | 2.37e-10 | 1 |
central nervous system cancer | 3.71e-10 | 1 |
meningioma | 3.71e-10 | 1 |
basal cell carcinoma | 8.24e-10 | 1 |