FFCP PHASE1:Hg19::chr5:110574533..110574537,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:110574533..110574537,+ | |||
|coexpression_cluster_id=C1473 | |coexpression_cluster_id=C1473 | ||
|description=CAGE_peak_at_chr5:110574533..110574537,+ | |description=CAGE_peak_at_chr5:110574533..110574537,+ | ||
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|ontology_enrichment_celltype=CL:0000542!1.78e-18!53;CL:0000051!1.78e-18!53;CL:0000084!3.44e-18!25;CL:0000827!3.44e-18!25;CL:0000838!6.29e-18!52;CL:0000791!2.66e-16!18;CL:0000789!2.66e-16!18;CL:0002420!2.66e-16!18;CL:0002419!2.66e-16!18;CL:0000790!2.66e-16!18;CL:0000625!9.58e-11!11;CL:0000738!1.53e-08!140;CL:0002087!2.38e-08!119 | |ontology_enrichment_celltype=CL:0000542!1.78e-18!53;CL:0000051!1.78e-18!53;CL:0000084!3.44e-18!25;CL:0000827!3.44e-18!25;CL:0000838!6.29e-18!52;CL:0000791!2.66e-16!18;CL:0000789!2.66e-16!18;CL:0002420!2.66e-16!18;CL:0002419!2.66e-16!18;CL:0000790!2.66e-16!18;CL:0000625!9.58e-11!11;CL:0000738!1.53e-08!140;CL:0002087!2.38e-08!119 | ||
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|ontology_enrichment_celltype_v019_2=CL:0000791,2.32e-23,18;CL:0000789,2.32e-23,18;CL:0002420,2.32e-23,18;CL:0002419,2.32e-23,18;CL:0000790,2.32e-23,18;CL:0000084,3.37e-18,25;CL:0000827,3.37e-18,25;CL:0000625,3.83e-16,11;CL:0000838,1.98e-11,52;CL:0000542,4.05e-11,53;CL:0000051,4.05e-11,53;CL:0000624,1.81e-10,6;CL:0000226,5.72e-08,3;CL:0000842,5.72e-08,3;CL:0000623,9.25e-08,3;CL:0000825,9.25e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000790;1.65e-23;18!UBERON:0006215;1.59e-08;3 | |ontology_enrichment_development_v019=CL:0000790;1.65e-23;18!UBERON:0006215;1.59e-08;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0002619;1.11e-10;22!UBERON:0001950;4.75e-10;20!UBERON:0000956;3.89e-09;25!UBERON:0000203;3.89e-09;25!UBERON:0002791;7.98e-09;32!UBERON:0001869;8.52e-09;32!UBERON:0000178;4.62e-08;15!UBERON:0000179;4.62e-08;15!UBERON:0000463;4.62e-08;15!UBERON:0003528;6.02e-08;34!UBERON:0002020;6.02e-08;34!UBERON:0001893;8.80e-08;34!UBERON:0000073;2.32e-07;53!UBERON:0002616;2.32e-07;53!UBERON:0002780;2.41e-07;41!UBERON:0001890;2.41e-07;41!UBERON:0001871;2.45e-07;6 | |ontology_enrichment_uberon_v019=UBERON:0002619;1.11e-10;22!UBERON:0001950;4.75e-10;20!UBERON:0000956;3.89e-09;25!UBERON:0000203;3.89e-09;25!UBERON:0002791;7.98e-09;32!UBERON:0001869;8.52e-09;32!UBERON:0000178;4.62e-08;15!UBERON:0000179;4.62e-08;15!UBERON:0000463;4.62e-08;15!UBERON:0003528;6.02e-08;34!UBERON:0002020;6.02e-08;34!UBERON:0001893;8.80e-08;34!UBERON:0000073;2.32e-07;53!UBERON:0002616;2.32e-07;53!UBERON:0002780;2.41e-07;41!UBERON:0001890;2.41e-07;41!UBERON:0001871;2.45e-07;6 | ||
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| ||
|short_description=p@chr5:110574533..110574537,+ | |short_description=p@chr5:110574533..110574537,+ | ||
}} | }} |
Latest revision as of 08:41, 30 July 2015
Short description: | p@chr5:110574533..110574537, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:110574533..110574537, + |
Coexpression cluster: | C1473_CD4_cerebellum_thymus_neuroblastoma_CD8_Peripheral_caudate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.32e-23 | 18 |
alpha-beta T cell | 2.32e-23 | 18 |
immature T cell | 2.32e-23 | 18 |
mature T cell | 2.32e-23 | 18 |
immature alpha-beta T cell | 2.32e-23 | 18 |
T cell | 3.37e-18 | 25 |
pro-T cell | 3.37e-18 | 25 |
CD8-positive, alpha-beta T cell | 3.83e-16 | 11 |
lymphoid lineage restricted progenitor cell | 1.98e-11 | 52 |
lymphocyte | 4.05e-11 | 53 |
common lymphoid progenitor | 4.05e-11 | 53 |
CD4-positive, alpha-beta T cell | 1.81e-10 | 6 |
single nucleate cell | 5.72e-08 | 3 |
mononuclear cell | 5.72e-08 | 3 |
natural killer cell | 9.25e-08 | 3 |
pro-NK cell | 9.25e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 5.62e-11 | 53 |
regional part of brain | 5.62e-11 | 53 |
regional part of cerebral cortex | 8.43e-11 | 22 |
neocortex | 3.79e-10 | 20 |
neural tube | 3.93e-10 | 56 |
neural rod | 3.93e-10 | 56 |
future spinal cord | 3.93e-10 | 56 |
neural keel | 3.93e-10 | 56 |
regional part of telencephalon | 1.31e-09 | 32 |
cerebral hemisphere | 1.31e-09 | 32 |
brain | 2.68e-09 | 68 |
future brain | 2.68e-09 | 68 |
cerebral cortex | 3.06e-09 | 25 |
pallium | 3.06e-09 | 25 |
regional part of forebrain | 4.29e-09 | 41 |
forebrain | 4.29e-09 | 41 |
anterior neural tube | 4.29e-09 | 41 |
future forebrain | 4.29e-09 | 41 |
nervous system | 5.29e-09 | 89 |
brain grey matter | 7.15e-09 | 34 |
gray matter | 7.15e-09 | 34 |
telencephalon | 7.15e-09 | 34 |
adult organism | 1.04e-08 | 114 |
blood | 3.96e-08 | 15 |
haemolymphatic fluid | 3.96e-08 | 15 |
organism substance | 3.96e-08 | 15 |
temporal lobe | 1.78e-07 | 6 |
central nervous system | 5.08e-07 | 81 |