FFCP PHASE1:Hg19::chr3:105085548..105085584,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=214 | |EntrezGene=214 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=400 | |HGNC=400 | ||
|TSSclassifier=strong | |||
|UniProt=B4DTU0,Q13740,B3KNN9,Q6PEY4 | |UniProt=B4DTU0,Q13740,B3KNN9,Q6PEY4 | ||
|association_with_transcript=0bp_to_NM_001243280,NM_001243281,NM_001243283,NM_001627_5end | |association_with_transcript=0bp_to_NM_001243280,NM_001243281,NM_001243283,NM_001627_5end | ||
|cluster_id=chr3:105085548..105085584,+ | |||
|coexpression_cluster_id=C1916 | |coexpression_cluster_id=C1916 | ||
|description=CAGE_peak_2_at_ALCAM_5end | |description=CAGE_peak_2_at_ALCAM_5end | ||
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|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.16e-08;33!CL:0002057;1.16e-08;33!CL:0000473;8.60e-07;39!CL:0000234;8.60e-07;39 | |ontology_enrichment_celltype_v019=CL:0000860;1.16e-08;33!CL:0002057;1.16e-08;33!CL:0000473;8.60e-07;39!CL:0000234;8.60e-07;39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000134,9.53e-07,354 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.49e-11!57;UBERON:0005068!4.49e-11!57;UBERON:0006241!4.49e-11!57;UBERON:0007135!4.49e-11!57;UBERON:0002616!7.40e-11!59;UBERON:0003075!4.93e-10!86;UBERON:0007284!4.93e-10!86;UBERON:0002346!2.54e-09!90;UBERON:0003080!3.04e-09!42;UBERON:0002780!4.28e-09!41;UBERON:0001890!4.28e-09!41;UBERON:0006240!4.28e-09!41;UBERON:0000955!5.16e-09!69;UBERON:0006238!5.16e-09!69;UBERON:0000033!1.15e-08!123;UBERON:0002020!1.53e-08!34;UBERON:0003528!1.53e-08!34;UBERON:0003056!2.19e-08!61;UBERON:0001893!2.75e-08!34;UBERON:0002791!4.61e-08!33;UBERON:0000073!5.41e-08!94;UBERON:0001016!5.41e-08!94;UBERON:0005743!6.74e-08!86;UBERON:0001017!8.29e-08!82;UBERON:0000153!1.51e-07!129;UBERON:0007811!1.51e-07!129;UBERON:0001869!1.59e-07!32 | |ontology_enrichment_uberon=UBERON:0001049!4.49e-11!57;UBERON:0005068!4.49e-11!57;UBERON:0006241!4.49e-11!57;UBERON:0007135!4.49e-11!57;UBERON:0002616!7.40e-11!59;UBERON:0003075!4.93e-10!86;UBERON:0007284!4.93e-10!86;UBERON:0002346!2.54e-09!90;UBERON:0003080!3.04e-09!42;UBERON:0002780!4.28e-09!41;UBERON:0001890!4.28e-09!41;UBERON:0006240!4.28e-09!41;UBERON:0000955!5.16e-09!69;UBERON:0006238!5.16e-09!69;UBERON:0000033!1.15e-08!123;UBERON:0002020!1.53e-08!34;UBERON:0003528!1.53e-08!34;UBERON:0003056!2.19e-08!61;UBERON:0001893!2.75e-08!34;UBERON:0002791!4.61e-08!33;UBERON:0000073!5.41e-08!94;UBERON:0001016!5.41e-08!94;UBERON:0005743!6.74e-08!86;UBERON:0001017!8.29e-08!82;UBERON:0000153!1.51e-07!129;UBERON:0007811!1.51e-07!129;UBERON:0001869!1.59e-07!32 | ||
|ontology_enrichment_uberon_v019=UBERON:0003528;3.20e-07;34!UBERON:0002020;3.20e-07;34!UBERON:0001893;4.44e-07;34!UBERON:0002780;4.94e-07;41!UBERON:0001890;4.94e-07;41!UBERON:0002791;5.14e-07;32!UBERON:0001869;7.61e-07;32 | |ontology_enrichment_uberon_v019=UBERON:0003528;3.20e-07;34!UBERON:0002020;3.20e-07;34!UBERON:0001893;4.44e-07;34!UBERON:0002780;4.94e-07;41!UBERON:0001890;4.94e-07;41!UBERON:0002791;5.14e-07;32!UBERON:0001869;7.61e-07;32 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,6.18e-11,56;UBERON:0005068,6.18e-11,56;UBERON:0006241,6.18e-11,56;UBERON:0007135,6.18e-11,56;UBERON:0003075,9.05e-11,82;UBERON:0007284,9.05e-11,82;UBERON:0002346,5.48e-10,86;UBERON:0000073,5.85e-10,53;UBERON:0002616,5.85e-10,53;UBERON:0002780,4.17e-09,41;UBERON:0001890,4.17e-09,41;UBERON:0003080,4.17e-09,41;UBERON:0006240,4.17e-09,41;UBERON:0000955,6.11e-09,68;UBERON:0006238,6.11e-09,68;UBERON:0003056,1.01e-08,61;UBERON:0003528,1.49e-08,34;UBERON:0002020,1.49e-08,34;UBERON:0001893,2.69e-08,34;UBERON:0010314,3.40e-08,132;UBERON:0001016,9.81e-08,89;UBERON:0002791,9.99e-08,32;UBERON:0001017,1.08e-07,81;UBERON:0000479,1.24e-07,773;UBERON:0001869,1.56e-07,32;UBERON:0001434,2.06e-07,100;UBERON:0002371,6.69e-07,76;UBERON:0002384,9.51e-07,371 | |||
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| ||
|short_description=p2@ALCAM | |short_description=p2@ALCAM | ||
}} | }} |
Latest revision as of 09:11, 19 September 2015
Short description: | p2@ALCAM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ALCAM_5end |
Coexpression cluster: | C1916_Fibroblast_amniotic_Adipocyte_Smooth_immature_CD14_normal |
Association with transcript: | 0bp_to_NM_001243280, NM_001243281, NM_001243283, NM_001627_5end |
EntrezGene: | ALCAM |
HGNC: | 400 |
UniProt: | B4DTU0Q13740B3KNN9Q6PEY4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal cell | 9.53e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
neural tube | 6.18e-11 | 56 |
neural rod | 6.18e-11 | 56 |
future spinal cord | 6.18e-11 | 56 |
neural keel | 6.18e-11 | 56 |
neural plate | 9.05e-11 | 82 |
presumptive neural plate | 9.05e-11 | 82 |
neurectoderm | 5.48e-10 | 86 |
regional part of nervous system | 5.85e-10 | 53 |
regional part of brain | 5.85e-10 | 53 |
regional part of forebrain | 4.17e-09 | 41 |
forebrain | 4.17e-09 | 41 |
anterior neural tube | 4.17e-09 | 41 |
future forebrain | 4.17e-09 | 41 |
brain | 6.11e-09 | 68 |
future brain | 6.11e-09 | 68 |
pre-chordal neural plate | 1.01e-08 | 61 |
brain grey matter | 1.49e-08 | 34 |
gray matter | 1.49e-08 | 34 |
telencephalon | 2.69e-08 | 34 |
structure with developmental contribution from neural crest | 3.40e-08 | 132 |
nervous system | 9.81e-08 | 89 |
regional part of telencephalon | 9.99e-08 | 32 |
central nervous system | 1.08e-07 | 81 |
tissue | 1.24e-07 | 773 |
cerebral hemisphere | 1.56e-07 | 32 |
skeletal system | 2.06e-07 | 100 |
bone marrow | 6.69e-07 | 76 |
connective tissue | 9.51e-07 | 371 |