FFCP PHASE1:Hg19::chr1:100111275..100111307,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54873 | |EntrezGene=54873 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15846 | |HGNC=15846 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NP74 | |UniProt=Q9NP74 | ||
|association_with_transcript=-123bp_to_NM_017734,uc001dsf.2,uc001dsg.2_5end | |association_with_transcript=-123bp_to_NM_017734,uc001dsf.2,uc001dsg.2_5end | ||
|cluster_id=chr1:100111275..100111307,+ | |||
|coexpression_cluster_id=C53 | |coexpression_cluster_id=C53 | ||
|description=CAGE_peak_7_at_PALMD_5end | |description=CAGE_peak_7_at_PALMD_5end | ||
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|ontology_enrichment_celltype=CL:0002139!2.01e-21!24;CL:0000071!2.87e-16!18;CL:0002546!2.87e-16!18;CL:0000115!1.57e-15!35;CL:0002078!6.15e-13!44;CL:0002543!6.49e-09!6;CL:1000413!1.18e-08!9;CL:0000213!3.07e-08!57;CL:0000215!3.07e-08!57 | |ontology_enrichment_celltype=CL:0002139!2.01e-21!24;CL:0000071!2.87e-16!18;CL:0002546!2.87e-16!18;CL:0000115!1.57e-15!35;CL:0002078!6.15e-13!44;CL:0002543!6.49e-09!6;CL:1000413!1.18e-08!9;CL:0000213!3.07e-08!57;CL:0000215!3.07e-08!57 | ||
|ontology_enrichment_celltype_v019=CL:0002139;7.38e-26;24!CL:0002138;4.48e-20;6!CL:0000115;6.77e-16;36!CL:0002618;7.40e-15;3!CL:0002543;8.99e-13;6!CL:0000071;8.34e-12;18!CL:0002078;8.20e-10;45!CL:0000213;2.17e-08;58!CL:0000215;2.17e-08;58 | |ontology_enrichment_celltype_v019=CL:0002139;7.38e-26;24!CL:0002138;4.48e-20;6!CL:0000115;6.77e-16;36!CL:0002618;7.40e-15;3!CL:0002543;8.99e-13;6!CL:0000071;8.34e-12;18!CL:0002078;8.20e-10;45!CL:0000213;2.17e-08;58!CL:0000215;2.17e-08;58 | ||
|ontology_enrichment_celltype_v019_2=CL:0002139,4.85e-26,24;CL:0005020,2.99e-20,6;CL:0002138,2.99e-20,6;CL:0005022,2.99e-20,6;CL:0000115,1.67e-19,36;CL:0002078,4.83e-15,45;CL:0002618,1.06e-14,3;CL:0002543,9.63e-13,6;CL:0000071,7.25e-12,18;CL:0002546,7.25e-12,18;CL:0000213,4.70e-11,58;CL:0000215,4.70e-11,58 | |||
|ontology_enrichment_development_v019=CL:0005022;4.48e-20;6!CL:0002546;8.34e-12;18!UBERON:0003056;2.66e-07;3 | |ontology_enrichment_development_v019=CL:0005022;4.48e-20;6!CL:0002546;8.34e-12;18!UBERON:0003056;2.66e-07;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!2.87e-16!18;UBERON:0004638!2.87e-16!18;UBERON:0004852!2.87e-16!18;UBERON:0000477!5.35e-16!286;UBERON:0007023!2.70e-15!115;UBERON:0000487!4.56e-14!22;UBERON:0006914!3.28e-13!25;UBERON:0004111!3.81e-11!241;UBERON:0001557!1.70e-10!19;UBERON:0000467!5.28e-10!625;UBERON:0000480!6.34e-10!626;UBERON:0000468!7.32e-10!659;UBERON:0000063!2.14e-09!97;UBERON:0000481!7.21e-09!347;UBERON:0003915!1.18e-08!9;UBERON:0004700!1.18e-08!9;UBERON:0001917!1.18e-08!9;UBERON:0000025!1.28e-08!194;UBERON:0002049!2.46e-08!79;UBERON:0007798!2.46e-08!79;UBERON:0001009!5.32e-08!113;UBERON:0001737!6.41e-08!9;UBERON:0000055!8.46e-08!69;UBERON:0000483!1.56e-07!309;UBERON:0000922!1.75e-07!612;UBERON:0000064!2.19e-07!219;UBERON:0000119!2.85e-07!312;UBERON:0003103!2.98e-07!69;UBERON:0004872!4.94e-07!84;UBERON:0003914!6.88e-07!118;UBERON:0002050!8.24e-07!605;UBERON:0005423!8.24e-07!605 | |ontology_enrichment_uberon=UBERON:0001986!2.87e-16!18;UBERON:0004638!2.87e-16!18;UBERON:0004852!2.87e-16!18;UBERON:0000477!5.35e-16!286;UBERON:0007023!2.70e-15!115;UBERON:0000487!4.56e-14!22;UBERON:0006914!3.28e-13!25;UBERON:0004111!3.81e-11!241;UBERON:0001557!1.70e-10!19;UBERON:0000467!5.28e-10!625;UBERON:0000480!6.34e-10!626;UBERON:0000468!7.32e-10!659;UBERON:0000063!2.14e-09!97;UBERON:0000481!7.21e-09!347;UBERON:0003915!1.18e-08!9;UBERON:0004700!1.18e-08!9;UBERON:0001917!1.18e-08!9;UBERON:0000025!1.28e-08!194;UBERON:0002049!2.46e-08!79;UBERON:0007798!2.46e-08!79;UBERON:0001009!5.32e-08!113;UBERON:0001737!6.41e-08!9;UBERON:0000055!8.46e-08!69;UBERON:0000483!1.56e-07!309;UBERON:0000922!1.75e-07!612;UBERON:0000064!2.19e-07!219;UBERON:0000119!2.85e-07!312;UBERON:0003103!2.98e-07!69;UBERON:0004872!4.94e-07!84;UBERON:0003914!6.88e-07!118;UBERON:0002050!8.24e-07!605;UBERON:0005423!8.24e-07!605 | ||
|ontology_enrichment_uberon_v019=UBERON:0001473;5.36e-15;8!UBERON:0004536;5.36e-15;8!UBERON:0006558;5.36e-15;8!UBERON:0002465;6.05e-12;10!UBERON:0004638;8.34e-12;18!UBERON:0001986;8.34e-12;18!UBERON:0004852;8.34e-12;18!UBERON:0002133;1.52e-10;2!UBERON:0000487;1.72e-09;22!UBERON:0002066;4.19e-09;5!UBERON:0001638;1.52e-08;9!UBERON:0003920;1.52e-08;9!UBERON:0004582;1.52e-08;9!UBERON:0006914;3.05e-08;25!UBERON:0004151;1.22e-07;3!UBERON:0000490;2.65e-07;33!UBERON:0003978;2.66e-07;3!UBERON:0000946;2.66e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0001473;5.36e-15;8!UBERON:0004536;5.36e-15;8!UBERON:0006558;5.36e-15;8!UBERON:0002465;6.05e-12;10!UBERON:0004638;8.34e-12;18!UBERON:0001986;8.34e-12;18!UBERON:0004852;8.34e-12;18!UBERON:0002133;1.52e-10;2!UBERON:0000487;1.72e-09;22!UBERON:0002066;4.19e-09;5!UBERON:0001638;1.52e-08;9!UBERON:0003920;1.52e-08;9!UBERON:0004582;1.52e-08;9!UBERON:0006914;3.05e-08;25!UBERON:0004151;1.22e-07;3!UBERON:0000490;2.65e-07;33!UBERON:0003978;2.66e-07;3!UBERON:0000946;2.66e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001473,3.97e-15,8;UBERON:0004536,3.97e-15,8;UBERON:0006558,3.97e-15,8;UBERON:0000055,2.45e-12,68;UBERON:0002465,4.78e-12,10;UBERON:0004638,7.25e-12,18;UBERON:0001986,7.25e-12,18;UBERON:0004852,7.25e-12,18;UBERON:0002049,2.44e-10,78;UBERON:0007798,2.44e-10,78;UBERON:0002133,2.64e-10,2;UBERON:0001009,1.08e-09,112;UBERON:0000487,1.54e-09,22;UBERON:0002066,5.18e-09,5;UBERON:0004535,8.91e-09,109;UBERON:0001638,1.59e-08,9;UBERON:0003920,1.59e-08,9;UBERON:0004582,1.59e-08,9;UBERON:0006914,2.77e-08,25;UBERON:0004151,1.18e-07,3;UBERON:0003978,3.83e-07,3;UBERON:0009751,3.83e-07,3;UBERON:0000946,3.83e-07,3;UBERON:0002523,3.83e-07,3;UBERON:0005983,3.83e-07,3;UBERON:0002165,3.83e-07,3;UBERON:0002062,3.83e-07,3;UBERON:0007280,3.83e-07,3 | |||
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| ||
|short_description=p7@PALMD | |short_description=p7@PALMD | ||
}} | }} |
Latest revision as of 03:04, 25 September 2015
Short description: | p7@PALMD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_PALMD_5end |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | -123bp_to_NM_017734, uc001dsf.2, uc001dsg.2_5end |
EntrezGene: | PALMD |
HGNC: | 15846 |
UniProt: | Q9NP74 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 4.85e-26 | 24 |
lymphangioblast | 2.99e-20 | 6 |
endothelial cell of lymphatic vessel | 2.99e-20 | 6 |
vascular lymphangioblast | 2.99e-20 | 6 |
endothelial cell | 1.67e-19 | 36 |
meso-epithelial cell | 4.83e-15 | 45 |
endothelial cell of umbilical vein | 1.06e-14 | 3 |
vein endothelial cell | 9.63e-13 | 6 |
blood vessel endothelial cell | 7.25e-12 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.25e-12 | 18 |
lining cell | 4.70e-11 | 58 |
barrier cell | 4.70e-11 | 58 |
Ontology term | p-value | n |
---|---|---|
lymphatic vessel | 3.97e-15 | 8 |
lymph vasculature | 3.97e-15 | 8 |
lymphatic part of lymphoid system | 3.97e-15 | 8 |
vessel | 2.45e-12 | 68 |
lymphoid system | 4.78e-12 | 10 |
blood vessel endothelium | 7.25e-12 | 18 |
endothelium | 7.25e-12 | 18 |
cardiovascular system endothelium | 7.25e-12 | 18 |
vasculature | 2.44e-10 | 78 |
vascular system | 2.44e-10 | 78 |
atrioventricular valve | 2.64e-10 | 2 |
circulatory system | 1.08e-09 | 112 |
simple squamous epithelium | 1.54e-09 | 22 |
umbilical vein | 5.18e-09 | 5 |
cardiovascular system | 8.91e-09 | 109 |
vein | 1.59e-08 | 9 |
venous blood vessel | 1.59e-08 | 9 |
venous system | 1.59e-08 | 9 |
squamous epithelium | 2.77e-08 | 25 |
cardiac chamber | 1.18e-07 | 3 |
valve | 3.83e-07 | 3 |
cardiac mesenchyme | 3.83e-07 | 3 |
cardial valve | 3.83e-07 | 3 |
tunica intima | 3.83e-07 | 3 |
heart layer | 3.83e-07 | 3 |
endocardium | 3.83e-07 | 3 |
endocardial cushion | 3.83e-07 | 3 |
presumptive endocardium | 3.83e-07 | 3 |