FFCP PHASE1:Hg19::chr21:47532083..47532106,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |EntrezGene=1292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2212 | |HGNC=2212 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-225bp_to_ENST00000460886_5end | |association_with_transcript=-225bp_to_ENST00000460886_5end | ||
|cluster_id=chr21:47532083..47532106,+ | |||
|coexpression_cluster_id=C198 | |coexpression_cluster_id=C198 | ||
|description=CAGE_peak_11_at_COL6A2_5end | |description=CAGE_peak_11_at_COL6A2_5end | ||
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|ontology_enrichment_celltype=CL:0000055!3.17e-48!180;CL:0000057!6.85e-28!75;CL:0000680!2.65e-20!57;CL:0000056!2.65e-20!57;CL:0000355!2.65e-20!57;CL:0000187!3.26e-19!54;CL:0000183!6.12e-19!59;CL:0000393!1.90e-16!60;CL:0000211!1.90e-16!60;CL:0000192!2.81e-15!42;CL:0000514!2.81e-15!42;CL:0000048!6.03e-14!430;CL:0000723!8.28e-13!436;CL:0000034!1.93e-12!444;CL:0002620!1.63e-11!23;CL:0000359!4.41e-11!32;CL:0000499!2.81e-08!27;CL:0000136!1.41e-07!15;CL:0000222!1.58e-07!119;CL:0002570!5.96e-07!8 | |ontology_enrichment_celltype=CL:0000055!3.17e-48!180;CL:0000057!6.85e-28!75;CL:0000680!2.65e-20!57;CL:0000056!2.65e-20!57;CL:0000355!2.65e-20!57;CL:0000187!3.26e-19!54;CL:0000183!6.12e-19!59;CL:0000393!1.90e-16!60;CL:0000211!1.90e-16!60;CL:0000192!2.81e-15!42;CL:0000514!2.81e-15!42;CL:0000048!6.03e-14!430;CL:0000723!8.28e-13!436;CL:0000034!1.93e-12!444;CL:0002620!1.63e-11!23;CL:0000359!4.41e-11!32;CL:0000499!2.81e-08!27;CL:0000136!1.41e-07!15;CL:0000222!1.58e-07!119;CL:0002570!5.96e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0002620;1.88e-14;23!CL:0000057;3.11e-13;73!CL:0000192;3.23e-11;43!CL:0000723;1.09e-10;61!CL:0000187;1.22e-10;55!CL:0000134;1.40e-10;55!CL:0002320;3.83e-10;188!CL:0000393;2.77e-09;61!CL:0000211;2.77e-09;61!CL:0000048;2.93e-09;58!CL:0000359;3.64e-09;32!CL:0002570;1.37e-08;8!CL:0000499;8.36e-08;28!CL:0000034;1.03e-07;69!CL:0002334;3.48e-07;12!CL:0000136;4.57e-07;13 | |ontology_enrichment_celltype_v019=CL:0002620;1.88e-14;23!CL:0000057;3.11e-13;73!CL:0000192;3.23e-11;43!CL:0000723;1.09e-10;61!CL:0000187;1.22e-10;55!CL:0000134;1.40e-10;55!CL:0002320;3.83e-10;188!CL:0000393;2.77e-09;61!CL:0000211;2.77e-09;61!CL:0000048;2.93e-09;58!CL:0000359;3.64e-09;32!CL:0002570;1.37e-08;8!CL:0000499;8.36e-08;28!CL:0000034;1.03e-07;69!CL:0002334;3.48e-07;12!CL:0000136;4.57e-07;13 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.24e-33,76;CL:0000048,4.05e-25,427;CL:0000723,5.92e-24,433;CL:0000034,1.85e-22,441;CL:0000680,1.14e-20,58;CL:0000056,1.14e-20,58;CL:0000355,1.14e-20,58;CL:0000187,2.64e-19,55;CL:0000393,1.38e-16,61;CL:0000211,1.38e-16,61;CL:0000192,6.13e-15,43;CL:0000514,6.13e-15,43;CL:0002620,1.26e-14,23;CL:0002320,2.22e-13,361;CL:0000134,8.72e-11,354;CL:0000359,1.59e-09,32;CL:0000219,1.04e-08,386;CL:0000136,1.42e-08,15;CL:0002570,1.65e-08,8;CL:0000499,9.09e-08,28;CL:0002334,3.29e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;3.23e-11;43!CL:0000355;4.03e-11;58 | |ontology_enrichment_development_v019=CL:0000514;3.23e-11;43!CL:0000355;4.03e-11;58 | ||
|ontology_enrichment_disease=DOID:2394!1.63e-07!14 | |ontology_enrichment_disease=DOID:2394!1.63e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;1.71e-08;14 | |ontology_enrichment_disease_v019=DOID:2394;1.71e-08;14 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,2.03e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.74e-25!83;UBERON:0002329!2.74e-25!83;UBERON:0003077!2.74e-25!83;UBERON:0003059!2.74e-25!83;UBERON:0007282!2.74e-25!83;UBERON:0009618!2.74e-25!83;UBERON:0007285!2.74e-25!83;UBERON:0004290!6.94e-24!70;UBERON:0002385!7.99e-21!63;UBERON:0001015!7.99e-21!63;UBERON:0000383!7.99e-21!63;UBERON:0001134!1.46e-20!61;UBERON:0002036!1.46e-20!61;UBERON:0003082!1.46e-20!61;UBERON:0000486!4.27e-20!82;UBERON:0005256!3.13e-18!143;UBERON:0002100!8.81e-12!216;UBERON:0003102!5.63e-11!95;UBERON:0000475!2.54e-10!365;UBERON:0002199!1.33e-09!45;UBERON:0002416!1.33e-09!45;UBERON:0000490!1.99e-08!138;UBERON:0000481!2.78e-08!347;UBERON:0003104!2.86e-08!238;UBERON:0009142!2.86e-08!238;UBERON:0001013!5.15e-08!14;UBERON:0004872!9.04e-08!84;UBERON:0002097!2.58e-07!40;UBERON:0001637!6.56e-07!42;UBERON:0003509!6.56e-07!42;UBERON:0004572!6.56e-07!42;UBERON:0004573!7.02e-07!33;UBERON:0004571!7.02e-07!33 | |ontology_enrichment_uberon=UBERON:0000914!2.74e-25!83;UBERON:0002329!2.74e-25!83;UBERON:0003077!2.74e-25!83;UBERON:0003059!2.74e-25!83;UBERON:0007282!2.74e-25!83;UBERON:0009618!2.74e-25!83;UBERON:0007285!2.74e-25!83;UBERON:0004290!6.94e-24!70;UBERON:0002385!7.99e-21!63;UBERON:0001015!7.99e-21!63;UBERON:0000383!7.99e-21!63;UBERON:0001134!1.46e-20!61;UBERON:0002036!1.46e-20!61;UBERON:0003082!1.46e-20!61;UBERON:0000486!4.27e-20!82;UBERON:0005256!3.13e-18!143;UBERON:0002100!8.81e-12!216;UBERON:0003102!5.63e-11!95;UBERON:0000475!2.54e-10!365;UBERON:0002199!1.33e-09!45;UBERON:0002416!1.33e-09!45;UBERON:0000490!1.99e-08!138;UBERON:0000481!2.78e-08!347;UBERON:0003104!2.86e-08!238;UBERON:0009142!2.86e-08!238;UBERON:0001013!5.15e-08!14;UBERON:0004872!9.04e-08!84;UBERON:0002097!2.58e-07!40;UBERON:0001637!6.56e-07!42;UBERON:0003509!6.56e-07!42;UBERON:0004572!6.56e-07!42;UBERON:0004573!7.02e-07!33;UBERON:0004571!7.02e-07!33 | ||
|ontology_enrichment_uberon_v019=UBERON:0002385;5.89e-12;31!UBERON:0001015;5.89e-12;31!UBERON:0000383;5.89e-12;31!UBERON:0002384;1.24e-10;198!UBERON:0001013;3.19e-10;14!UBERON:0002199;1.92e-09;46!UBERON:0002416;1.92e-09;46!UBERON:0001134;2.78e-08;16!UBERON:0002036;2.78e-08;16!UBERON:0002204;3.23e-08;70!UBERON:0002097;4.91e-08;41!UBERON:0003102;1.34e-07;50 | |ontology_enrichment_uberon_v019=UBERON:0002385;5.89e-12;31!UBERON:0001015;5.89e-12;31!UBERON:0000383;5.89e-12;31!UBERON:0002384;1.24e-10;198!UBERON:0001013;3.19e-10;14!UBERON:0002199;1.92e-09;46!UBERON:0002416;1.92e-09;46!UBERON:0001134;2.78e-08;16!UBERON:0002036;2.78e-08;16!UBERON:0002204;3.23e-08;70!UBERON:0002097;4.91e-08;41!UBERON:0003102;1.34e-07;50 | ||
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| ||
|short_description=p11@COL6A2 | |short_description=p11@COL6A2 | ||
}} | }} |
Latest revision as of 22:53, 18 September 2015
Short description: | p11@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -225bp_to_ENST00000460886_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.24e-33 | 76 |
multi fate stem cell | 4.05e-25 | 427 |
somatic stem cell | 5.92e-24 | 433 |
stem cell | 1.85e-22 | 441 |
muscle precursor cell | 1.14e-20 | 58 |
myoblast | 1.14e-20 | 58 |
multi-potent skeletal muscle stem cell | 1.14e-20 | 58 |
muscle cell | 2.64e-19 | 55 |
electrically responsive cell | 1.38e-16 | 61 |
electrically active cell | 1.38e-16 | 61 |
smooth muscle cell | 6.13e-15 | 43 |
smooth muscle myoblast | 6.13e-15 | 43 |
skin fibroblast | 1.26e-14 | 23 |
connective tissue cell | 2.22e-13 | 361 |
mesenchymal cell | 8.72e-11 | 354 |
vascular associated smooth muscle cell | 1.59e-09 | 32 |
motile cell | 1.04e-08 | 386 |
fat cell | 1.42e-08 | 15 |
mesenchymal stem cell of adipose | 1.65e-08 | 8 |
stromal cell | 9.09e-08 | 28 |
preadipocyte | 3.29e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 1.16e-25 | 73 |
somite | 1.73e-25 | 71 |
presomitic mesoderm | 1.73e-25 | 71 |
presumptive segmental plate | 1.73e-25 | 71 |
dermomyotome | 1.73e-25 | 71 |
trunk paraxial mesoderm | 1.73e-25 | 71 |
paraxial mesoderm | 7.78e-25 | 72 |
presumptive paraxial mesoderm | 7.78e-25 | 72 |
skeletal muscle tissue | 2.56e-21 | 62 |
striated muscle tissue | 2.56e-21 | 62 |
myotome | 2.56e-21 | 62 |
epithelial vesicle | 2.63e-21 | 78 |
muscle tissue | 3.82e-21 | 64 |
musculature | 3.82e-21 | 64 |
musculature of body | 3.82e-21 | 64 |
multilaminar epithelium | 1.17e-20 | 83 |
trunk mesenchyme | 1.14e-18 | 122 |
mesenchyme | 2.06e-15 | 160 |
entire embryonic mesenchyme | 2.06e-15 | 160 |
integument | 7.18e-14 | 46 |
integumental system | 7.18e-14 | 46 |
connective tissue | 3.00e-13 | 371 |
surface structure | 9.67e-13 | 99 |
skin of body | 9.10e-11 | 41 |
unilaminar epithelium | 1.25e-10 | 148 |
adipose tissue | 3.90e-10 | 14 |
mesoderm | 5.74e-10 | 315 |
mesoderm-derived structure | 5.74e-10 | 315 |
presumptive mesoderm | 5.74e-10 | 315 |
trunk | 7.55e-09 | 199 |
musculoskeletal system | 1.19e-07 | 167 |
systemic artery | 3.81e-07 | 33 |
systemic arterial system | 3.81e-07 | 33 |
tissue | 7.01e-07 | 773 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.03e-08 | 14 |