FFCP PHASE1:Hg19::chr20:61493117..61493187,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:61493117..61493187,-
|short_description=p1@TCFL5
|description=CAGE_peak_1_at_TCFL5_5end
|association_with_transcript=-2bp_to_ENST00000217162,ENST000003353...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10732 | |EntrezGene=10732 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11646 | |HGNC=11646 | ||
|TSSclassifier=strong | |||
|UniProt=F8W9A4,Q9UL49,Q86TP4 | |UniProt=F8W9A4,Q9UL49,Q86TP4 | ||
|association_with_transcript=-2bp_to_ENST00000217162,ENST00000335351,NM_006602,uc002ydp.2,uc002ydq.2_5end | |||
|cluster_id=chr20:61493117..61493187,- | |||
|description=CAGE_peak_1_at_TCFL5_5end | |||
|id=chr20:61493117..61493187,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!1.34e-07!239;DOID:162!2.20e-07!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,1.34e-07,239;DOID:162,2.20e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0001049!2.05e-13!57;UBERON:0005068!2.05e-13!57;UBERON:0006241!2.05e-13!57;UBERON:0007135!2.05e-13!57;UBERON:0005743!1.67e-12!86;UBERON:0001017!2.35e-12!82;UBERON:0000955!3.43e-12!69;UBERON:0006238!3.43e-12!69;UBERON:0000073!8.73e-12!94;UBERON:0001016!8.73e-12!94;UBERON:0003075!9.10e-12!86;UBERON:0007284!9.10e-12!86;UBERON:0002346!2.39e-11!90;UBERON:0002780!1.20e-10!41;UBERON:0001890!1.20e-10!41;UBERON:0006240!1.20e-10!41;UBERON:0002616!1.34e-10!59;UBERON:0001893!2.54e-10!34;UBERON:0002020!2.77e-10!34;UBERON:0003528!2.77e-10!34;UBERON:0003080!6.25e-10!42;UBERON:0002791!8.43e-10!33;UBERON:0001869!3.26e-09!32;UBERON:0003056!2.05e-08!61;UBERON:0000153!2.44e-08!129;UBERON:0007811!2.44e-08!129;UBERON:0000033!2.59e-08!123;UBERON:0004121!3.93e-08!169;UBERON:0000924!5.29e-08!173;UBERON:0006601!5.29e-08!173;UBERON:0000475!9.26e-08!365;UBERON:0002619!1.86e-07!22;UBERON:0000483!9.11e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;4.76e-09;34!UBERON:0003528;7.11e-09;34!UBERON:0002020;7.11e-09;34!UBERON:0000073;2.24e-08;53!UBERON:0002616;2.24e-08;53!UBERON:0002791;2.40e-08;32!UBERON:0001869;2.44e-08;32!UBERON:0002780;1.20e-07;41!UBERON:0001890;1.20e-07;41!UBERON:0002619;1.73e-07;22!UBERON:0000956;8.56e-07;25!UBERON:0000203;8.56e-07;25!UBERON:0001950;9.97e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,3.82e-14,56;UBERON:0005068,3.82e-14,56;UBERON:0006241,3.82e-14,56;UBERON:0007135,3.82e-14,56;UBERON:0000073,3.47e-13,53;UBERON:0002616,3.47e-13,53;UBERON:0001017,6.67e-13,81;UBERON:0000955,8.60e-13,68;UBERON:0006238,8.60e-13,68;UBERON:0001016,4.22e-12,89;UBERON:0003075,4.77e-12,82;UBERON:0007284,4.77e-12,82;UBERON:0002346,1.35e-11,86;UBERON:0010371,1.02e-10,104;UBERON:0002780,1.20e-10,41;UBERON:0001890,1.20e-10,41;UBERON:0003080,1.20e-10,41;UBERON:0006240,1.20e-10,41;UBERON:0001893,2.54e-10,34;UBERON:0003528,2.77e-10,34;UBERON:0002020,2.77e-10,34;UBERON:0003056,2.16e-09,61;UBERON:0002791,3.14e-09,32;UBERON:0001869,3.26e-09,32;UBERON:0010314,1.67e-08,132;UBERON:0004121,2.58e-08,171;UBERON:0000924,2.58e-08,171;UBERON:0006601,2.58e-08,171;UBERON:0002619,1.86e-07,22;UBERON:0000483,6.45e-07,306 | |||
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| ||
|short_description=p1@TCFL5 | |||
}} | }} |
Latest revision as of 11:45, 17 September 2015
Short description: | p1@TCFL5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TCFL5_5end |
Coexpression cluster: | NA |
Association with transcript: | -2bp_to_ENST00000217162, ENST00000335351, NM_006602, uc002ydp.2, uc002ydq.2_5end |
EntrezGene: | TCFL5 |
HGNC: | 11646 |
UniProt: | F8W9A4Q9UL49Q86TP4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 3.82e-14 | 56 |
neural rod | 3.82e-14 | 56 |
future spinal cord | 3.82e-14 | 56 |
neural keel | 3.82e-14 | 56 |
regional part of nervous system | 3.47e-13 | 53 |
regional part of brain | 3.47e-13 | 53 |
central nervous system | 6.67e-13 | 81 |
brain | 8.60e-13 | 68 |
future brain | 8.60e-13 | 68 |
nervous system | 4.22e-12 | 89 |
neural plate | 4.77e-12 | 82 |
presumptive neural plate | 4.77e-12 | 82 |
neurectoderm | 1.35e-11 | 86 |
ecto-epithelium | 1.02e-10 | 104 |
regional part of forebrain | 1.20e-10 | 41 |
forebrain | 1.20e-10 | 41 |
anterior neural tube | 1.20e-10 | 41 |
future forebrain | 1.20e-10 | 41 |
telencephalon | 2.54e-10 | 34 |
brain grey matter | 2.77e-10 | 34 |
gray matter | 2.77e-10 | 34 |
pre-chordal neural plate | 2.16e-09 | 61 |
regional part of telencephalon | 3.14e-09 | 32 |
cerebral hemisphere | 3.26e-09 | 32 |
structure with developmental contribution from neural crest | 1.67e-08 | 132 |
ectoderm-derived structure | 2.58e-08 | 171 |
ectoderm | 2.58e-08 | 171 |
presumptive ectoderm | 2.58e-08 | 171 |
regional part of cerebral cortex | 1.86e-07 | 22 |
epithelium | 6.45e-07 | 306 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 1.34e-07 | 239 |
cancer | 2.20e-07 | 235 |