FFCP PHASE1:Hg19::chr16:58005026..58005040,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1258 | |EntrezGene=1258 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2151 | |HGNC=2151 | ||
|TSSclassifier=strong | |||
|UniProt=Q14028 | |UniProt=Q14028 | ||
|association_with_transcript=-6bp_to_ENST00000311183,NM_001135639,NM_001297,uc002emt.2,uc002emu.2,uc010cdh.2_5end | |association_with_transcript=-6bp_to_ENST00000311183,NM_001135639,NM_001297,uc002emt.2,uc002emu.2,uc010cdh.2_5end | ||
|cluster_id=chr16:58005026..58005040,- | |||
|coexpression_cluster_id=C40 | |coexpression_cluster_id=C40 | ||
|description=CAGE_peak_2_at_CNGB1_5end | |description=CAGE_peak_2_at_CNGB1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000243;9.93e-07;15!CL:0000125;9.93e-07;15 | |ontology_enrichment_celltype_v019=CL:0000243;9.93e-07;15!CL:0000125;9.93e-07;15 | ||
|ontology_enrichment_celltype_v019_2=CL:0000243,9.65e-07,15;CL:0000125,9.65e-07,15;CL:0000030,9.65e-07,15;CL:0000339,9.65e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0003056;7.70e-34;3!UBERON:0006238;6.63e-10;10!CL:0000339;9.93e-07;15 | |ontology_enrichment_development_v019=UBERON:0003056;7.70e-34;3!UBERON:0006238;6.63e-10;10!CL:0000339;9.93e-07;15 | ||
|ontology_enrichment_disease=DOID:9119!1.61e-14!1 | |ontology_enrichment_disease=DOID:9119!1.61e-14!1 | ||
|ontology_enrichment_disease_v019=DOID:3093;3.70e-09;11!DOID:5409;1.69e-07;4 | |ontology_enrichment_disease_v019=DOID:3093;3.70e-09;11!DOID:5409;1.69e-07;4 | ||
|ontology_enrichment_disease_v019_2=DOID:3093,3.55e-09,11;DOID:5409,1.69e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0001905!5.41e-28!2;UBERON:0002757!5.41e-28!2;UBERON:0010134!5.41e-28!2;UBERON:0002784!5.41e-28!2;UBERON:0005408!5.41e-28!2;UBERON:0001899!5.41e-28!2;UBERON:0003296!1.61e-14!4;UBERON:0010133!1.61e-14!4;UBERON:0002038!2.41e-14!1;UBERON:0009661!2.41e-14!1;UBERON:0000966!8.78e-12!5;UBERON:0005388!8.78e-12!5;UBERON:0001802!8.78e-12!5;UBERON:0000073!3.90e-10!94;UBERON:0001016!3.90e-10!94;UBERON:0005743!6.42e-09!86;UBERON:0001894!1.09e-08!7;UBERON:0006222!1.09e-08!7;UBERON:0002360!6.15e-08!2;UBERON:0000094!6.15e-08!2;UBERON:0007645!6.15e-08!2;UBERON:0002950!8.04e-08!2;UBERON:0001891!8.04e-08!2;UBERON:0009616!8.04e-08!2;UBERON:0001954!8.60e-08!2;UBERON:0003022!8.60e-08!2;UBERON:0002421!8.60e-08!2;UBERON:0002600!8.60e-08!2;UBERON:0003056!1.95e-07!61;UBERON:0001017!3.42e-07!82;UBERON:0003075!6.04e-07!86;UBERON:0007284!6.04e-07!86 | |ontology_enrichment_uberon=UBERON:0001905!5.41e-28!2;UBERON:0002757!5.41e-28!2;UBERON:0010134!5.41e-28!2;UBERON:0002784!5.41e-28!2;UBERON:0005408!5.41e-28!2;UBERON:0001899!5.41e-28!2;UBERON:0003296!1.61e-14!4;UBERON:0010133!1.61e-14!4;UBERON:0002038!2.41e-14!1;UBERON:0009661!2.41e-14!1;UBERON:0000966!8.78e-12!5;UBERON:0005388!8.78e-12!5;UBERON:0001802!8.78e-12!5;UBERON:0000073!3.90e-10!94;UBERON:0001016!3.90e-10!94;UBERON:0005743!6.42e-09!86;UBERON:0001894!1.09e-08!7;UBERON:0006222!1.09e-08!7;UBERON:0002360!6.15e-08!2;UBERON:0000094!6.15e-08!2;UBERON:0007645!6.15e-08!2;UBERON:0002950!8.04e-08!2;UBERON:0001891!8.04e-08!2;UBERON:0009616!8.04e-08!2;UBERON:0001954!8.60e-08!2;UBERON:0003022!8.60e-08!2;UBERON:0002421!8.60e-08!2;UBERON:0002600!8.60e-08!2;UBERON:0003056!1.95e-07!61;UBERON:0001017!3.42e-07!82;UBERON:0003075!6.04e-07!86;UBERON:0007284!6.04e-07!86 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;2.42e-50;2!UBERON:0002757;2.42e-50;2!UBERON:0010134;2.42e-50;2!UBERON:0005408;2.42e-50;2!UBERON:0001899;2.42e-50;2!UBERON:0003296;8.66e-26;4!UBERON:0010133;8.66e-26;4!UBERON:0002784;8.66e-26;4!UBERON:0000966;8.98e-21;5!UBERON:0005388;8.98e-21;5!UBERON:0001802;8.98e-21;5!UBERON:0001894;3.29e-15;7!UBERON:0000970;6.62e-12;20!UBERON:0002104;2.26e-11;21!UBERON:0000020;1.93e-10;23!UBERON:0001032;4.92e-10;24!UBERON:0004456;4.92e-10;24 | |ontology_enrichment_uberon_v019=UBERON:0001905;2.42e-50;2!UBERON:0002757;2.42e-50;2!UBERON:0010134;2.42e-50;2!UBERON:0005408;2.42e-50;2!UBERON:0001899;2.42e-50;2!UBERON:0003296;8.66e-26;4!UBERON:0010133;8.66e-26;4!UBERON:0002784;8.66e-26;4!UBERON:0000966;8.98e-21;5!UBERON:0005388;8.98e-21;5!UBERON:0001802;8.98e-21;5!UBERON:0001894;3.29e-15;7!UBERON:0000970;6.62e-12;20!UBERON:0002104;2.26e-11;21!UBERON:0000020;1.93e-10;23!UBERON:0001032;4.92e-10;24!UBERON:0004456;4.92e-10;24 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,2.42e-50,2;UBERON:0002757,2.42e-50,2;UBERON:0010134,2.42e-50,2;UBERON:0005408,2.42e-50,2;UBERON:0001899,2.42e-50,2;UBERON:0003296,8.66e-26,4;UBERON:0010133,8.66e-26,4;UBERON:0002784,8.66e-26,4;UBERON:0000966,1.57e-17,6;UBERON:0005388,1.57e-17,6;UBERON:0001802,1.57e-17,6;UBERON:0001894,3.29e-15,7;UBERON:0006222,3.29e-15,7;UBERON:0000970,2.18e-11,21;UBERON:0002104,2.18e-11,21;UBERON:0000020,4.77e-10,24;UBERON:0001032,4.77e-10,24;UBERON:0004456,4.77e-10,24;UBERON:0003056,7.76e-07,61 | |||
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|short_description=p2@CNGB1 | |short_description=p2@CNGB1 | ||
}} | }} |
Latest revision as of 05:15, 17 September 2015
Short description: | p2@CNGB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CNGB1_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | -6bp_to_ENST00000311183, NM_001135639, NM_001297, uc002emt.2, uc002emu.2, uc010cdh.2_5end |
EntrezGene: | CNGB1 |
HGNC: | 2151 |
UniProt: | Q14028 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 9.65e-07 | 15 |
glial cell | 9.65e-07 | 15 |
glioblast | 9.65e-07 | 15 |
glioblast (sensu Vertebrata) | 9.65e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
pineal body | 2.42e-50 | 2 |
regional part of epithalamus | 2.42e-50 | 2 |
secretory circumventricular organ | 2.42e-50 | 2 |
circumventricular organ | 2.42e-50 | 2 |
epithalamus | 2.42e-50 | 2 |
gland of diencephalon | 8.66e-26 | 4 |
neuroendocrine gland | 8.66e-26 | 4 |
regional part of diencephalon | 8.66e-26 | 4 |
retina | 1.57e-17 | 6 |
photoreceptor array | 1.57e-17 | 6 |
posterior segment of eyeball | 1.57e-17 | 6 |
diencephalon | 3.29e-15 | 7 |
future diencephalon | 3.29e-15 | 7 |
eye | 2.18e-11 | 21 |
visual system | 2.18e-11 | 21 |
sense organ | 4.77e-10 | 24 |
sensory system | 4.77e-10 | 24 |
entire sense organ system | 4.77e-10 | 24 |
pre-chordal neural plate | 7.76e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 3.55e-09 | 11 |
lung small cell carcinoma | 1.69e-07 | 4 |