FFCP PHASE1:Hg19::chr15:32976539..32976558,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6447 | |EntrezGene=6447 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10816 | |HGNC=10816 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-58bp_to_ENST00000498607_5end | |association_with_transcript=-58bp_to_ENST00000498607_5end | ||
|cluster_id=chr15:32976539..32976558,+ | |||
|coexpression_cluster_id=C2329 | |coexpression_cluster_id=C2329 | ||
|description=CAGE_peak_5_at_SCG5_5end | |description=CAGE_peak_5_at_SCG5_5end | ||
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|ontology_enrichment_celltype=CL:0002539!3.01e-10!10;CL:0000359!7.45e-10!32;CL:0000055!2.52e-08!180;CL:0002620!8.87e-08!23;CL:0002371!1.03e-07!591;CL:0000548!1.57e-07!679;CL:0000004!1.57e-07!679;CL:0000255!1.57e-07!679;CL:0000012!2.36e-07!682;CL:0002159!4.98e-07!13;CL:0000144!5.19e-07!625;CL:0000569!9.82e-07!4;CL:0000011!9.82e-07!4 | |ontology_enrichment_celltype=CL:0002539!3.01e-10!10;CL:0000359!7.45e-10!32;CL:0000055!2.52e-08!180;CL:0002620!8.87e-08!23;CL:0002371!1.03e-07!591;CL:0000548!1.57e-07!679;CL:0000004!1.57e-07!679;CL:0000255!1.57e-07!679;CL:0000012!2.36e-07!682;CL:0002159!4.98e-07!13;CL:0000144!5.19e-07!625;CL:0000569!9.82e-07!4;CL:0000011!9.82e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002539;1.32e-15;10!CL:0002166;1.77e-13;3!CL:0002621;1.77e-13;3!CL:0000054;5.41e-10;2!CL:0000137;5.41e-10;2!CL:0000092;5.41e-10;2!CL:0002159;1.93e-07;14!CL:0000359;2.12e-07;32 | |ontology_enrichment_celltype_v019=CL:0002539;1.32e-15;10!CL:0002166;1.77e-13;3!CL:0002621;1.77e-13;3!CL:0000054;5.41e-10;2!CL:0000137;5.41e-10;2!CL:0000092;5.41e-10;2!CL:0002159;1.93e-07;14!CL:0000359;2.12e-07;32 | ||
|ontology_enrichment_celltype_v019_2=CL:0002539,1.13e-15,10;CL:0002621,1.52e-13,3;CL:0002166,1.74e-13,3;CL:0000054,5.19e-10,2;CL:0000137,5.19e-10,2;CL:0000092,5.19e-10,2;CL:0000359,1.32e-07,32;CL:0002159,2.02e-07,14 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:17!5.95e-08!5;DOID:450!5.95e-08!5;DOID:66!5.95e-08!5;DOID:423!5.95e-08!5;DOID:0080000!5.95e-08!5;DOID:11722!5.95e-08!5;DOID:2394!3.37e-07!14 | |ontology_enrichment_disease=DOID:17!5.95e-08!5;DOID:450!5.95e-08!5;DOID:66!5.95e-08!5;DOID:423!5.95e-08!5;DOID:0080000!5.95e-08!5;DOID:11722!5.95e-08!5;DOID:2394!3.37e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:201;1.13e-11;6!DOID:0060100;1.13e-11;6!DOID:200;5.41e-10;2!DOID:4305;5.41e-10;2 | |ontology_enrichment_disease_v019=DOID:201;1.13e-11;6!DOID:0060100;1.13e-11;6!DOID:200;5.41e-10;2!DOID:4305;5.41e-10;2 | ||
|ontology_enrichment_disease_v019_2=DOID:201,8.10e-12,6;DOID:0060100,8.10e-12,6;DOID:200,5.19e-10,2;DOID:4305,5.19e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0002097!3.24e-11!40;UBERON:0002199!2.21e-10!45;UBERON:0002416!2.21e-10!45;UBERON:0004237!3.01e-10!10;UBERON:0004695!3.01e-10!10;UBERON:0002111!3.01e-10!10;UBERON:0004178!3.01e-10!10;UBERON:0000486!7.58e-07!82;UBERON:0001637!8.98e-07!42;UBERON:0003509!8.98e-07!42;UBERON:0004572!8.98e-07!42 | |ontology_enrichment_uberon=UBERON:0002097!3.24e-11!40;UBERON:0002199!2.21e-10!45;UBERON:0002416!2.21e-10!45;UBERON:0004237!3.01e-10!10;UBERON:0004695!3.01e-10!10;UBERON:0002111!3.01e-10!10;UBERON:0004178!3.01e-10!10;UBERON:0000486!7.58e-07!82;UBERON:0001637!8.98e-07!42;UBERON:0003509!8.98e-07!42;UBERON:0004572!8.98e-07!42 | ||
|ontology_enrichment_uberon_v019=UBERON:0004237;1.32e-15;10!UBERON:0004695;1.32e-15;10!UBERON:0002111;1.32e-15;10!UBERON:0004178;1.32e-15;10!UBERON:0001949;1.77e-13;3!UBERON:0001708;3.14e-10;4!UBERON:0008895;3.14e-10;4!UBERON:0001135;3.48e-10;15!UBERON:0000947;1.55e-09;21!UBERON:0010191;1.55e-09;21!UBERON:0011159;2.85e-08;5!UBERON:0004765;2.51e-07;26 | |ontology_enrichment_uberon_v019=UBERON:0004237;1.32e-15;10!UBERON:0004695;1.32e-15;10!UBERON:0002111;1.32e-15;10!UBERON:0004178;1.32e-15;10!UBERON:0001949;1.77e-13;3!UBERON:0001708;3.14e-10;4!UBERON:0008895;3.14e-10;4!UBERON:0001135;3.48e-10;15!UBERON:0000947;1.55e-09;21!UBERON:0010191;1.55e-09;21!UBERON:0011159;2.85e-08;5!UBERON:0004765;2.51e-07;26 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004237,1.13e-15,10;UBERON:0004695,1.13e-15,10;UBERON:0002111,1.13e-15,10;UBERON:0004178,1.13e-15,10;UBERON:0001949,1.52e-13,3;UBERON:0001708,3.10e-10,4;UBERON:0008895,3.10e-10,4;UBERON:0001135,3.15e-10,15;UBERON:0000947,1.46e-09,21;UBERON:0010191,1.46e-09,21;UBERON:0011159,2.82e-08,5;UBERON:0001637,5.69e-07,42;UBERON:0003509,5.69e-07,42;UBERON:0004572,5.69e-07,42;UBERON:0010188,5.79e-07,6;UBERON:0002539,5.79e-07,6;UBERON:0008816,5.79e-07,6;UBERON:0003914,5.82e-07,117 | |||
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| ||
|short_description=p5@SCG5 | |short_description=p5@SCG5 | ||
}} | }} |
Latest revision as of 04:18, 17 September 2015
Short description: | p5@SCG5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SCG5_5end |
Coexpression cluster: | C2329_cholangiocellular_gall_pagetoid_mesenchymal_bone_Macrophage_Aortic |
Association with transcript: | -58bp_to_ENST00000498607_5end |
EntrezGene: | SCG5 |
HGNC: | 10816 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
aortic smooth muscle cell | 1.13e-15 | 10 |
gingival epithelial cell | 1.52e-13 | 3 |
epithelial cell of Malassez | 1.74e-13 | 3 |
bone matrix secreting cell | 5.19e-10 | 2 |
osteocyte | 5.19e-10 | 2 |
osteoclast | 5.19e-10 | 2 |
vascular associated smooth muscle cell | 1.32e-07 | 32 |
general ecto-epithelial cell | 2.02e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
blood vessel smooth muscle | 1.13e-15 | 10 |
arterial system smooth muscle | 1.13e-15 | 10 |
artery smooth muscle tissue | 1.13e-15 | 10 |
aorta smooth muscle tissue | 1.13e-15 | 10 |
gingival epithelium | 1.52e-13 | 3 |
jaw skeleton | 3.10e-10 | 4 |
splanchnocranium | 3.10e-10 | 4 |
smooth muscle tissue | 3.15e-10 | 15 |
aorta | 1.46e-09 | 21 |
aortic system | 1.46e-09 | 21 |
primary subdivision of cranial skeletal system | 2.82e-08 | 5 |
artery | 5.69e-07 | 42 |
arterial blood vessel | 5.69e-07 | 42 |
arterial system | 5.69e-07 | 42 |
protuberance | 5.79e-07 | 6 |
pharyngeal arch | 5.79e-07 | 6 |
embryonic head | 5.79e-07 | 6 |
epithelial tube | 5.82e-07 | 117 |
Ontology term | p-value | n |
---|---|---|
connective tissue cancer | 8.10e-12 | 6 |
musculoskeletal system cancer | 8.10e-12 | 6 |
giant cell tumor | 5.19e-10 | 2 |
bone giant cell tumor | 5.19e-10 | 2 |