FFCP PHASE1:Hg19::chr6:56483724..56483742,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=667 | |EntrezGene=667 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=1090 | |HGNC=1090 | ||
|TSSclassifier=strong | |||
|UniProt=Q03001 | |UniProt=Q03001 | ||
|association_with_transcript=-56bp_to_M22942_5end | |association_with_transcript=-56bp_to_M22942_5end | ||
|cluster_id=chr6:56483724..56483742,- | |||
|coexpression_cluster_id=C457 | |coexpression_cluster_id=C457 | ||
|description=CAGE_peak_57_at_DST_5end | |description=CAGE_peak_57_at_DST_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002076!1.70e-12!43;CL:0002251!9.94e-11!21;CL:0000223!1.11e-10!59;CL:0000066!1.29e-08!254 | |ontology_enrichment_celltype=CL:0002076!1.70e-12!43;CL:0002251!9.94e-11!21;CL:0000223!1.11e-10!59;CL:0000066!1.29e-08!254 | ||
|ontology_enrichment_celltype_v019=CL:0002076;7.67e-26;42!CL:0002623;5.09e-17;3!CL:0002251;7.61e-15;20!CL:0002368;1.07e-14;13!CL:0002336;2.78e-13;1!CL:0002261;2.78e-13;1!CL:0002170;2.78e-13;1!CL:0002327;1.65e-12;4!CL:0000622;1.37e-10;5!CL:0000154;5.67e-09;6!CL:0000240;9.08e-09;6!CL:0000311;9.08e-09;6!CL:0000079;9.08e-09;6!CL:0000237;9.08e-09;6 | |ontology_enrichment_celltype_v019=CL:0002076;7.67e-26;42!CL:0002623;5.09e-17;3!CL:0002251;7.61e-15;20!CL:0002368;1.07e-14;13!CL:0002336;2.78e-13;1!CL:0002261;2.78e-13;1!CL:0002170;2.78e-13;1!CL:0002327;1.65e-12;4!CL:0000622;1.37e-10;5!CL:0000154;5.67e-09;6!CL:0000240;9.08e-09;6!CL:0000311;9.08e-09;6!CL:0000079;9.08e-09;6!CL:0000237;9.08e-09;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002076,6.84e-27,42;CL:0000223,3.80e-19,58;CL:0002623,5.30e-17,3;CL:0002251,8.31e-15,20;CL:0002368,8.98e-15,13;CL:0002336,3.76e-13,1;CL:0002261,3.76e-13,1;CL:0002170,3.76e-13,1;CL:0002327,1.75e-12,4;CL:0000622,1.40e-10,5;CL:0000066,7.36e-10,253;CL:0000154,5.79e-09,6;CL:0000240,1.04e-08,6;CL:0000311,1.04e-08,6;CL:0000079,1.04e-08,6;CL:0000237,1.04e-08,6;CL:0000036,1.04e-08,6;CL:0000357,1.04e-08,6;CL:0000114,1.04e-08,6 | |||
|ontology_enrichment_development_v019=UBERON:0000358;2.78e-13;1!CL:0000223;6.29e-10;58!CL:0000357;9.08e-09;6!CL:0000114;9.08e-09;6 | |ontology_enrichment_development_v019=UBERON:0000358;2.78e-13;1!CL:0000223;6.29e-10;58!CL:0000357;9.08e-09;6!CL:0000114;9.08e-09;6 | ||
|ontology_enrichment_disease=DOID:1749!2.61e-08!14 | |ontology_enrichment_disease=DOID:1749!2.61e-08!14 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000166!1.11e-07!21;UBERON:0003729!2.04e-07!5;UBERON:0001004!3.18e-07!72;UBERON:0000165!3.26e-07!28;UBERON:0000930!3.26e-07!28 | |ontology_enrichment_uberon=UBERON:0000166!1.11e-07!21;UBERON:0003729!2.04e-07!5;UBERON:0001004!3.18e-07!72;UBERON:0000165!3.26e-07!28;UBERON:0000930!3.26e-07!28 | ||
|ontology_enrichment_uberon_v019=UBERON:0001911;1.65e-12;4!UBERON:0000165;1.38e-10;28!UBERON:0000161;2.69e-10;19!UBERON:0000166;2.69e-10;19!UBERON:0001044;5.67e-09;6!UBERON:0003293;5.67e-09;6!UBERON:0003294;5.67e-09;6!UBERON:0010047;5.67e-09;6!UBERON:0003408;5.67e-09;6!UBERON:0000167;5.67e-09;6!UBERON:0003729;8.64e-09;13 | |ontology_enrichment_uberon_v019=UBERON:0001911;1.65e-12;4!UBERON:0000165;1.38e-10;28!UBERON:0000161;2.69e-10;19!UBERON:0000166;2.69e-10;19!UBERON:0001044;5.67e-09;6!UBERON:0003293;5.67e-09;6!UBERON:0003294;5.67e-09;6!UBERON:0010047;5.67e-09;6!UBERON:0003408;5.67e-09;6!UBERON:0000167;5.67e-09;6!UBERON:0003729;8.64e-09;13 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001911,1.75e-12,4;UBERON:0005333,1.75e-12,4;UBERON:0008425,1.75e-12,4;UBERON:0005311,1.75e-12,4;UBERON:0000165,3.43e-10,29;UBERON:0000930,3.43e-10,29;UBERON:0001004,2.20e-09,74;UBERON:0001044,5.79e-09,6;UBERON:0003293,5.79e-09,6;UBERON:0003294,5.79e-09,6;UBERON:0010047,5.79e-09,6;UBERON:0000167,5.79e-09,6;UBERON:0000166,6.48e-09,22;UBERON:0003729,9.24e-09,13;UBERON:0000161,3.19e-08,36;UBERON:0004119,2.11e-07,160;UBERON:0000925,2.11e-07,160;UBERON:0006595,2.11e-07,160;UBERON:0000033,3.18e-07,56;UBERON:0003102,9.48e-07,99 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0.125542639594803,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0.087834785693126,0,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336672227908132,0,0,0,0,0,0,0.358779271377724,0,0,0,0.103052529238439,0.257640540045629,0,0.337552664482532,0,0,0.0920498986422993,0,0,0.10075209822764,0,0.386521706326594,1.36373060295417,0.286804595389004,0,0.132529768321485,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0.122988438543114,0,0.878002283269004,0,1.3068766413512,2.03694579348765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,1.13420077793909,1.16426079513703,1.45316969256981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0.30239029332968,0,0,0.280660094433074,0.128139149255701,0,0,0,0,0,0,0,0,0,0.601519410909855,2.5782676902051,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,2.14870389969272,2.30628080838127,1.65896526242959,1.92199783625545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0,0,0.0941438007767792,0,0,0,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0.296964680832639,0.307160702099232,0,0,0,0,0,0,0,0.251932747854276,0.20453736500431,0,0,0,0.358042349351218,0,0,0,0,0,0.0927680981618513,0,0,0,0,0.455173793141999,0,0,0,0,0.173624994933292,0,0,0,0,0.295547618953547,0,0,0.83654246567162,0,0,0,0,0.217294743844016,0.31900115973192,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0.554698692052555,0,0,0.0870592065804026,0.17472666824203,0,0,0,0,0,0.0882561266915003,0,0.137041924646751,0,0,0,0.0801588202515337,0,0,0.144090417154106,0,0,0,0.124252535565433,0.707082103850386,0,0.313808538937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0.0984274815147488,0.0846733320657845,0,0,0,0,0.415440338029185,0.2249738915515,0.77380195455795,0,0,0,0,0.211200673038813,0.896436696664224,0.575745591958336,0,0,0,0,0.864221491201268,0.326587360109409,0,0.082092520749339,0.681552087141687,0,0,0,0,0.13223260174269,0,0,0,0,0.414239055347196,0,0,0,0.638341257770182,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0.573409195690071,0,0,0.138348634936231,0.37494122388632,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0.228840068396924,0,0,0.295710299979268,0,0,0,0,0.265841714557995,0.521745061811734,0,0.761610424337591,0,0,0,0,0,0.800055529326307,0.343395705182793,0,0,0,0,0,0.226705925512272,0,0.489473409012935,0.358177682162975,0,0,0,0.771656153083659,0,0,0,0.303859956177382,0.138258436151731,0,0,0,0,0.245772908753719,0,0.19998739585493,0,0.172214979660816,0,0.184105950251841,1.67855409263333,0.622077260032973,0,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0.0981477185010256,0.235939446695481,3.66857197043358,0.462102664601353,0.381382095467167,0,0,0,0.20170506870352,0,0,0.49131575253029,0,0,0,0,0,0,0,0,0,0.894336993477167,0,0.336283722218824,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0.116241425368125,0,0,2.27937780579341,6.31658365247615,0.691259661814092,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0.11294608203896,0.219881033490858,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0.0999411559249289,0.357107877211315,0.352894871715692,0,0,0.458729283404541,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0.217716747896961,0,0,0.0717222053926763,0.332660356546013,0,0.106727345877715,0,0,2.34640942403454,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0.125542639594803,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0.087834785693126,0,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336672227908132,0,0,0,0,0,0,0.358779271377724,0,0,0,0.103052529238439,0.257640540045629,0,0.337552664482532,0,0,0.0920498986422993,0,0,0.10075209822764,0,0.386521706326594,1.36373060295417,0.286804595389004,0,0.132529768321485,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0.122988438543114,0,0.878002283269004,0,1.3068766413512,2.03694579348765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,1.13420077793909,1.16426079513703,1.45316969256981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0.30239029332968,0,0,0.280660094433074,0.128139149255701,0,0,0,0,0,0,0,0,0,0.601519410909855,2.5782676902051,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,2.14870389969272,2.30628080838127,1.65896526242959,1.92199783625545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0,0,0.0941438007767792,0,0,0,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0.296964680832639,0.307160702099232,0,0,0,0,0,0,0,0.251932747854276,0.20453736500431,0,0,0,0.358042349351218,0,0,0,0,0,0.0927680981618513,0,0,0,0,0.455173793141999,0,0,0,0,0.173624994933292,0,0,0,0,0.295547618953547,0,0,0.83654246567162,0,0,0,0,0.217294743844016,0.31900115973192,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0.554698692052555,0,0,0.0870592065804026,0.17472666824203,0,0,0,0,0,0.0882561266915003,0,0.137041924646751,0,0,0,0.0801588202515337,0,0,0.144090417154106,0,0,0,0.124252535565433,0.707082103850386,0,0.313808538937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0.0984274815147488,0.0846733320657845,0,0,0,0,0.415440338029185,0.2249738915515,0.77380195455795,0,0,0,0,0.211200673038813,0.896436696664224,0.575745591958336,0,0,0,0,0.864221491201268,0.326587360109409,0,0.082092520749339,0.681552087141687,0,0,0,0,0.13223260174269,0,0,0,0,0.414239055347196,0,0,0,0.638341257770182,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0.573409195690071,0,0,0.138348634936231,0.37494122388632,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0.228840068396924,0,0,0.295710299979268,0,0,0,0,0.265841714557995,0.521745061811734,0,0.761610424337591,0,0,0,0,0,0.800055529326307,0.343395705182793,0,0,0,0,0,0.226705925512272,0,0.489473409012935,0.358177682162975,0,0,0,0.771656153083659,0,0,0,0.303859956177382,0.138258436151731,0,0,0,0,0.245772908753719,0,0.19998739585493,0,0.172214979660816,0,0.184105950251841,1.67855409263333,0.622077260032973,0,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0.0981477185010256,0.235939446695481,3.66857197043358,0.462102664601353,0.381382095467167,0,0,0,0.20170506870352,0,0,0.49131575253029,0,0,0,0,0,0,0,0,0,0.894336993477167,0,0.336283722218824,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0.116241425368125,0,0,2.27937780579341,6.31658365247615,0.691259661814092,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0.11294608203896,0.219881033490858,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0.0999411559249289,0.357107877211315,0.352894871715692,0,0,0.458729283404541,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0.217716747896961,0,0,0.0717222053926763,0.332660356546013,0,0.106727345877715,0,0,2.34640942403454,0,0,0,0,0 | ||
|short_description=p57@DST | |short_description=p57@DST | ||
}} | }} |
Latest revision as of 09:02, 19 September 2015
Short description: | p57@DST |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_57_at_DST_5end |
Coexpression cluster: | C457_salivary_Prostate_oral_Small_Keratinocyte_Urothelial_Mammary |
Association with transcript: | -56bp_to_M22942_5end |
EntrezGene: | DST |
HGNC: | 1090 |
UniProt: | Q03001 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 6.84e-27 | 42 |
endodermal cell | 3.80e-19 | 58 |
acinar cell of salivary gland | 5.30e-17 | 3 |
epithelial cell of alimentary canal | 8.31e-15 | 20 |
respiratory epithelial cell | 8.98e-15 | 13 |
buccal mucosa cell | 3.76e-13 | 1 |
endothelial cell of viscerocranial mucosa | 3.76e-13 | 1 |
keratinized cell of the oral mucosa | 3.76e-13 | 1 |
mammary gland epithelial cell | 1.75e-12 | 4 |
acinar cell | 1.40e-10 | 5 |
epithelial cell | 7.36e-10 | 253 |
protein secreting cell | 5.79e-09 | 6 |
stratified squamous epithelial cell | 1.04e-08 | 6 |
keratin accumulating cell | 1.04e-08 | 6 |
stratified epithelial cell | 1.04e-08 | 6 |
keratinizing barrier epithelial cell | 1.04e-08 | 6 |
epithelial fate stem cell | 1.04e-08 | 6 |
stratified epithelial stem cell | 1.04e-08 | 6 |
surface ectodermal cell | 1.04e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
mammary gland | 1.75e-12 | 4 |
mammary bud | 1.75e-12 | 4 |
mammary ridge | 1.75e-12 | 4 |
mammary placode | 1.75e-12 | 4 |
mouth | 3.43e-10 | 29 |
stomodeum | 3.43e-10 | 29 |
respiratory system | 2.20e-09 | 74 |
saliva-secreting gland | 5.79e-09 | 6 |
gland of oral region | 5.79e-09 | 6 |
gland of foregut | 5.79e-09 | 6 |
oral gland | 5.79e-09 | 6 |
oral cavity | 5.79e-09 | 6 |
oral opening | 6.48e-09 | 22 |
mouth mucosa | 9.24e-09 | 13 |
orifice | 3.19e-08 | 36 |
endoderm-derived structure | 2.11e-07 | 160 |
endoderm | 2.11e-07 | 160 |
presumptive endoderm | 2.11e-07 | 160 |
head | 3.18e-07 | 56 |
surface structure | 9.48e-07 | 99 |