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MacroAPE 1083:4-HCTTHYBCTD: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;95.742;85.05;0.243;61.965!2;14.823;123.93;38.151;66.096!3;0.243;56.619;0.243;185.895!4;27.216;58.563;16.281;140.94!5;55.404;87.966;43.74;55....")
 
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7-111C8;0.847124!10789-110H6;0.428253!10828-111C9;0.535044!10788-110H5;0.99819!10792-110H9;0.664621!10765-110E9;0.337062!10829-111D1;0.592443!10830-111D2;0.537116!10831-111D3;0.908035!10832-111D4;0.636212!10833-111D5;0.715436!10764-110E8;0.525494!10770-110F5;0.739989!10399-106A3;0.606999!10400-106A4;0.967546!10405-106A9;0.978387!10834-111D6;0.993417!10835-111D7;0.839065!10836-111D8;0.849313!10837-111D9;0.644492!10699-109G6;0.913598!10802-111A1;0.931646!10796-110I4;0.817747!10010-101C1;0.998219!10810-111A9;0.520494!10421-106C7;0.502956!10708-109H6;0.762654!12235-129G3;0.47747!12236-129G4;0.703112!12237-129G5;0.551448!10167-103B5;0.838327!10151-102I7;0.854009!10428-106D5;0.928167!10795-110I3;0.125207!10805-111A4;0.864373!10052-101G7;0.469582!10189-103D9;0.705668!10589-108D4;0.546963!10425-106D2;0.298726!10427-106D4;0.969501!10702-109G9;0.539904!10432-106D9;0.535915!10496-107C1;0.232654!10718-109I7;0.854063!10011-101C2;0.465573!10053-101G8;0.824652!10686-109F2;0.364227!10084-102B3;0.119682!10012-101C3;0.706506!10085-102B4;0.731933!10482-107A5;0.992178!10419-106C5;0.660359!10080-102A8;0.443213!10760-110E4;0.730937!10709-109H7;0.49939!10710-109H8;0.962121!10703-109H1;0.88961!10719-109I8;0.861292!10642-109A3;0.291589!10177-103C6;0.323507!10164-103B2;0.837191!10173-103C2;0.989004!10166-103B4;0.975321!10083-102B2;0.758053!10188-103D8;0.907094!10552-107I3;0.858916!10553-107I4;0.806038!10013-101C4;0.132159!10536-107G5;0.72936!10618-108G6;0.446553!10423-106C9;0.655291!10785-110H2;0.487295!12238-129G6;0.607265!12239-129G7;0.173647!12240-129G8;0.882313!10416-106C2;0.0295932!10801-110I9;0.545258!10766-110F1;0.437009!10824-111C5;0.523894!10825-111C6;0.380368!10826-111C7;0.327565!10454-106G4;0.274374!10409-106B4;0.706402!10638-108I8;0.799963!10636-108I6;0.410638!10513-107D9;0.755155!10420-106C6;0.746284!10082-102B1;0.161355!10014-101C5;0.503445!10070-101I7;0.549907!10452-106G2;0.62041!10453-106G3;0.0531088!10449-106F8;0.109418!10042-101F6;0.128588!10069-101I6;0.430548!10193-103E4;0.167388!10631-108I1;0.660369!10438-106E6;0.913792!10488-107B2;0.400883!10196-103E7;0.822364!10071-101I8;0.974297!10071-101I8;0.59123!10041-101F5;0.776427!10451-106G1;0.406795!10450-106F9;0.352541!10604-108F1;0.43644!10605-108F2;0.165078!10606-108F3;0.477394!10603-108E9;0.128302!10497-107C2;0.162567!10448-106F7;0.765957!10643-109A4;0.493193!10426-106D3;0.912797!10431-106D8;0.391378!10197-103E8;0.0847312!10443-106F2;0.098406!10815-111B5;0.297438!10816-111B6;0.879353!10817-111B7;0.596939!10015-101C6;0.803027!10410-106B5;0.37168!10054-101G9;0.385733!10758-110E2;0.33202!10711-109H9;0.186146!10040-101F4;0.546886!10470-106I2;0.975934!10415-106C1;0.802551!10198-103E9;0.359724!10614-108G2;0.232922!10612-108F9;0.623974!10549-107H9;0.642783!10615-108G3;0.135621!10487-107B1;0.784521!10433-106E1;0.957543!10688-109F4;0.187558!10444-106F3;0.573111!10444-106F3;0.158109!10485-107A8;0.233875!10413-106B8;0.225857!10175-103C4;0.635128!10161-103A8;0.67036!12131-128D7;0.561322!10624-108H3;0.605409!10712-109I1;0.751376!10205-103F7;0.38463!10206-103F8;0.422873!10207-103F9;0.479312!10050-101G5;0.574077!10051-101G6;0.240064!10016-101C7;0.136371!10046-101G1;0.276714!10778-110G4;0.765559!10633-108I3;0.670066!10818-111B8;0.356694!10819-111B9;0.32937!10820-111C1;0.42401!10484-107A7;0.378688!10808-111A7;0.390794!10169-103B7;0.481983!10153-102I9;0.828019!13425-144D5;0.823441!13433-144E4;0.835078!13437-144E8;0.871476!11904-125F5;0.950865!11905-125F6;0.696604!10039-101F3;0.710342!10791-110H8;0.950951!10017-101C8;0.37818!10045-101F9;0.0758772!10509-107D5;0.99618!10839-111E2;0.916979!10692-109F8;0.575537!10079-102A7;0.128675!10078-102A6;0.114533!10721-110A1;0.217725!10569-108B2;0.493274!10570-108B3;0.909556!10571-108B4;0.68532!10647-109A8;0.247579!10752-110D5;0.147999!10782-110G8;0.71277!10726-110A6;0.339287!10018-101C9;0.669229!10086-102B5;0.00242605!10182-103D2;0.00187697!10165-103B3;0.755438!10499-107C4;0.632917!10408-106B3;0.834619!10019-101D1;0.927022!10068-101I5;0.685339!10075-102A3;0.66863!10077-102A5;0.554306!10727-110A7;0.408828!10775-110G1;0.66728!10412-106B7;0.59859!12231-129F8;0.0170194!12232-129F9;0.39538!12233-129G1;0.529739!12234-129G2;0.657164!10414-106B9;0.499175!10170-103B8;0.930989!10183-103D3;0.974811!10150-102I6;0.934814!10174-103C3;0.952161!10155-103A2;0.513822!10038-101F2;0.520165!10838-111E1;0.589328!10759-110E3;0.666072!10514-107E1;0.209052!10465-106H6;0.309086!10691-109F7;0.787846!10843-111E6;0.169725!10844-111E7;0.619262!11747-123G1;0.97526!11748-123G2;0.520589!11749-123G3;0.348205!11750-123G4;0.785731!11751-123G5;0.57792!11840-124H4;0.65603!11752-123G6;0.496748!11753-123G7;0.279761!11754-123G8;0.454132!11755-123G9;0.150101!11756-123H1;0.00884934!11833-124G6;0.00327759!11760-123H5;0.233532!11836-124G9;0.0203091!11758-123H3;0.346886!11835-124G8;0.424975!11762-123H7;0.729462!11838-124H2;0.705579!11757-123H2;0.926071!11759-123H4;0.0508828!11761-123H6;0.120211!11842-124H6;0.2488!11837-124H1;0.454737!10568-108B1;0.878345!13230-141I8;0.818187!13231-141I9;0.612691!10696-109G3;0.558445!10493-107B7;0.307374!10494-107B8;0.050126!10850-111F4;0.939442!10851-111F5;0.402762!10852-111F6;0.364676!10853-111F7;0.504491!10854-111F8;0.364204!10855-111F9;0.141648!10856-111G1;0.384997!10847-111F1;0.799104!10846-111E9;0.0664709!10848-111F2;0.370017!10845-111E8;0.0388156!10857-111G2;0.617414!10858-111G3;0.883917!10156-103A3;0.304797!11901-125F2;0.964204!11902-125F3;0.440944!11903-125F4;0.462922!10689-109F5;0.255636!10648-109A9;0.597725!10784-110H1;0.178732!10744-110C6;0.152374!10772-110F7;0.756036!10474-106I6;0.93199!10600-108E6;0.237413!10684-109E9;0.0412869!12226-129F3;0.0881687!12227-129F4;0.965058!10508-107D4;0.868577!10539-107G8;0.969943!10607-108F4;0.365852!10555-107I6;0.387355!10774-110F9;0.449853!10637-108I7;0.0904566!10663-109C6;0.971797!10728-110A8;0.975961!10729-110A9;0.622927!10430-106D7;0.592266!10730-110B1;0.265658!10813-111B3;0.420905!10812-111B2;0.759625!10037-101F1;0.630052!10172-103C1;0.992192!10163-103B1;0.874783!10076-102A4;0.90233!10073-102A1;0.939435!10036-101E9;0.770383!10195-103E6;0.997878!10277-104E7;0.916967!10434-106E2;0.528772!10550-107I1;0.829802!10545-107H5;0.397195!10544-107H4;0.376993!10704-109H2;0.224348!10510-107D6;0.88812!10558-107I9;0.000699727!10020-101D2;0.178543!10732-110B3;0.942856!10049-101G4;0.702785!10698-109G5;0.392974!10437-106E5;0.741308!10417-106C3;0.896211!10035-101E8;0.453714!10171-103B9;0.957695!10157-103A4;0.891935!10034-101E7;0.949482!10072-101I9;0.952035!10199-103F1;0.736748!10200-103F2;0.141536!10697-109G4;0.32423!10723-110A3;0.903008!10179-103C8;0.564245!10160-103A7;0.550153!10180-103C9;0.456838!10162-103A9;0.411089!10021-101D3;0.495009!10840-111E3;0.524993!10706-109H4;0.75954!10033-101E6;0.784679!10032-101E5;0.668141!10490-107B4;0.883335!10439-106E7;0.849992!10022-101D4;0.185457!10176-103C5;0.869393!10469-106I1;0.90928!10067-101I4;0.737813!10411-106B6;0.954428!10471-106I3;0.720734!10030-101E3;0.757826!10475-106I7;0.62662!10787-110H4;0.962661!10477-106I9;0.852689!10695-109G2;0.351515!11771-123I7;0.256876!11772-123I8;0.688265!11773-123I9;0.876916!10093-102C3;0.759894!10442-106F1;0.0423942!10442-106F1;0.235732!10201-103F3;0.148341!10639-108I9;0.737692!11843-124H7;0.50139!11841-124H5;0.682641!10693-109F9;0.67321!10436-106E4;0.46329!10483-107A6;0.911619!10282-104F3;0.904962!10023-101D5;0.0753233!10066-101I3;0.113325!10065-101I2;0.134827!10800-110I8;0.440521!10610-108F7;0.688974!10841-111E4;0.389017!10541-107H1;0.786012!10842-111E5;0.415654!10562-108A4;0.742531!10024-101D6;0.766655!10064-101I1;0.251569!10609-108F6;0.336093!10048-101G3;0.773136!10781-110G7;0.959985!10181-103D1;0.558674!10159-103A6;0.554812!10056-101H2;0.483698!10737-110B8;0.732954!10025-101D7;0.16824!10044-101F8;0.535946!10424-106D1;0.636382!10463-106H4;0.880375!10616-108G4;0.0864074!10486-107A9;0.26129!10062-101H8;0.879337!10202-103F4;0.832991!10158-103A5;0.075033!10441-106E9;0.295152!10031-101E4;0.0860386!10063-101H9;0.814803!10063-101H9;0.651702!11763-123H8;0.307929!11765-123I1;0.806916!11768-123I4;0.736443!10807-111A6;0.876707!10790-110H7;0.284778!10798-110I6;0.802373!10786-110H3;0.723165!10591-108D6;0.505767!10593-108D8;0.353407!10590-108D5;0.0257034!10026-101D8;0.380585!10096-102C6;0.305101!10168-103B6;0.652789!10154-103A1;0.545025!10209-103G2;0.624752!10061-101H7;0.110886!10027-101D9;0.505449!10043-101F7;0.708755!10783-110G9;0.786497!10028-101E1;0.899927!10060-101H6;0.0897059!10203-103F5;0.537294!10059-101H5;0.0990252!10047-101G2;0.150683!10029-101E2;0.151894!10058-101H4;0.219549!10418-106C4;0.420653!10492-107B6;0.188057!10694-109G1;0.235435!10797-110I5;0.126367!10057-101H3;0.937335!10100-102D1;0.24625!10055-101H1;0.348473!10204-103F6;0.412295!10191-103E2;0.382481!10563-108A5;0.304291
|name=4-HCTTHYBCTD,CNhs11948,BestGuess:SPIB.p2.SwissRegulon.nucfreq(0.717774978553243),T:243.0(7.21%),B:1263.9(2.74%),P:1e-39
|name=4-HCTTHYBCTD,CNhs11948,BestGuess:SPIB.p2.SwissRegulon.nucfreq(0.717774978553243),T:243.0(7.21%),B:1263.9(2.74%),P:1e-39
|tomtom_result=Klf4#MA0039.1;0;0.000251897;0.119903;0.239806;10;ACTTCCTCTT;CCTTCCTTTA;-!CUP2#MA0287.1;1;0.000642635;0.305894;0.305894;10;ACTTCCTCTT;CATTTCTGCTG;-!SPIB#MA0081.1;-2;0.00118758;0.565286;0.376858;7;ACTTCCTCTT;TTCCTCT;-!RXR::RAR_DR5#MA0159.1;3;0.0070246;3.34371;1;10;ACTTCCTCTT;TGACCTCTCCGTGACCT;-!id1#MA0120.1;-1;0.00789573;3.75837;1;9;ACTTCCTCTT;TTTTCCTTTTCG;+!PEND#MA0127.1;0;0.00966221;4.59921;1;10;ACTTCCTCTT;ACTTCTTATT;+!SFL1#MA0377.1;1;0.0141495;6.73516;1;10;ACTTCCTCTT;TTTTATTTCTTCTATTCTCTA;-!HAP4#MA0315.1;-1;0.0151927;7.23173;1;9;ACTTCCTCTT;TCGCCTCTGATTGGT;-!PPARG::RXRA#MA0065.2;4;0.0209968;9.99449;1;10;ACTTCCTCTT;TGACCTTTGCCCTAC;-
}}
}}

Latest revision as of 13:58, 7 September 2012

Full Name: 4-HCTTHYBCTD,CNhs11948,BestGuess:SPIB.p2.SwissRegulon.nucfreq(0.717774978553243),T:243.0(7.21%),B:1263.9(2.74%),P:1e-39

Motif matrix
POACGT
195.74285.050.24361.965
214.823123.9338.15166.096
30.24356.6190.243185.895
427.21658.56316.281140.94
555.40487.96643.7455.647
641.06795.01329.1677.76
70.24378.00370.22794.527
80.243242.2710.2430.243
90.2430.2430.243242.271
1060.2640.24387.4895.013

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Klf4#MA0039.100.0002518970.1199030.23980610ACTTCCTCTTCCTTCCTTTA-
CUP2#MA0287.110.0006426350.3058940.30589410ACTTCCTCTTCATTTCTGCTG-
SPIB#MA0081.1-20.001187580.5652860.3768587ACTTCCTCTTTTCCTCT-
RXR::RAR_DR5#MA0159.130.00702463.34371110ACTTCCTCTTTGACCTCTCCGTGACCT-
id1#MA0120.1-10.007895733.7583719ACTTCCTCTTTTTTCCTTTTCG+
PEND#MA0127.100.009662214.59921110ACTTCCTCTTACTTCTTATT+
SFL1#MA0377.110.01414956.73516110ACTTCCTCTTTTTTATTTCTTCTATTCTCTA-
HAP4#MA0315.1-10.01519277.2317319ACTTCCTCTTTCGCCTCTGATTGGT-
PPARG::RXRA#MA0065.240.02099689.99449110ACTTCCTCTTTGACCTTTGCCCTAC-
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