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MacroAPE 1083:13-GGATTTGT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;161.408;234.546;1929.33;196.716!2;206.804;224.458;1848.626;242.112!3;1558.596;267.332;375.778;320.294!4;302.64;143.754;194.194;1881.412!5;83...")
 
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!10827-111C8;0.653907!10789-110H6;0.434055!10828-111C9;0.154076!10788-110H5;0.487789!10792-110H9;0.182889!10765-110E9;0.0599995!10829-111D1;0.284107!10830-111D2;0.456616!10831-111D3;0.12833!10832-111D4;0.762216!10833-111D5;0.3769!10764-110E8;0.187449!10770-110F5;0.124953!10399-106A3;0.295911!10400-106A4;0.102117!10405-106A9;0.195407!10834-111D6;0.17807!10835-111D7;0.578811!10836-111D8;0.830725!10837-111D9;0.527136!10699-109G6;0.190159!10802-111A1;0.741502!10796-110I4;0.365838!10010-101C1;0.183327!10810-111A9;0.781431!10421-106C7;0.854411!10708-109H6;0.540281!12235-129G3;0.823719!12236-129G4;0.681016!12237-129G5;0.0960635!10167-103B5;0.506444!10151-102I7;0.139393!10428-106D5;0.105071!10795-110I3;0.997433!10805-111A4;0.785993!10052-101G7;0.739227!10189-103D9;0.438935!10589-108D4;0.878413!10425-106D2;0.275105!10427-106D4;0.605755!10702-109G9;0.802402!10432-106D9;0.768911!10496-107C1;0.726448!10718-109I7;0.285402!10011-101C2;0.395744!10053-101G8;0.931597!10686-109F2;0.40506!10084-102B3;0.57841!10012-101C3;0.0944434!10085-102B4;0.14816!10482-107A5;0.115155!10419-106C5;0.597162!10080-102A8;0.454395!10760-110E4;0.808695!10709-109H7;0.602861!10710-109H8;0.0489112!10703-109H1;0.211243!10719-109I8;0.761713!10642-109A3;0.626779!10177-103C6;0.585124!10164-103B2;0.149942!10173-103C2;0.100279!10166-103B4;0.061002!10083-102B2;0.100925!10188-103D8;0.0650957!10552-107I3;0.104601!10553-107I4;0.541875!10013-101C4;0.799846!10536-107G5;0.842893!10618-108G6;0.319573!10423-106C9;0.971476!10785-110H2;0.496352!12238-129G6;0.386791!12239-129G7;0.827312!12240-129G8;0.587836!10416-106C2;0.64591!10801-110I9;0.636434!10766-110F1;0.333182!10824-111C5;0.0842343!10825-111C6;0.614696!10826-111C7;0.579193!10454-106G4;0.742811!10409-106B4;0.869018!10638-108I8;0.0433176!10636-108I6;0.537031!10513-107D9;0.292047!10420-106C6;0.311259!10082-102B1;0.861877!10014-101C5;0.954628!10070-101I7;0.949536!10452-106G2;0.887532!10453-106G3;0.304392!10449-106F8;0.460847!10042-101F6;0.40391!10069-101I6;0.0479173!10193-103E4;0.210128!10631-108I1;0.0413758!10438-106E6;0.628133!10488-107B2;0.425208!10196-103E7;0.376601!10071-101I8;0.769366!10071-101I8;0.528967!10041-101F5;0.198378!10451-106G1;0.415021!10450-106F9;0.719939!10604-108F1;0.98736!10605-108F2;0.261852!10606-108F3;0.354453!10603-108E9;0.693583!10497-107C2;0.499456!10448-106F7;0.859146!10643-109A4;0.60461!10426-106D3;0.264221!10431-106D8;0.671509!10197-103E8;0.51626!10443-106F2;0.66427!10815-111B5;0.368422!10816-111B6;0.515603!10817-111B7;0.362358!10015-101C6;0.543072!10410-106B5;0.898504!10054-101G9;0.999859!10758-110E2;0.0743433!10711-109H9;0.607348!10040-101F4;0.620015!10470-106I2;0.15597!10415-106C1;0.140769!10198-103E9;0.346056!10614-108G2;0.841716!10612-108F9;0.664033!10549-107H9;0.505883!10615-108G3;0.688347!10487-107B1;0.63075!10433-106E1;0.938109!10688-109F4;0.672878!10444-106F3;0.56223!10444-106F3;0.120276!10485-107A8;0.224845!10413-106B8;0.915054!10175-103C4;0.927902!10161-103A8;0.0660784!12131-128D7;0.0595012!10624-108H3;0.797429!10712-109I1;0.326574!10205-103F7;0.797971!10206-103F8;0.234275!10207-103F9;0.18753!10050-101G5;0.241015!10051-101G6;0.0788557!10016-101C7;0.116155!10046-101G1;0.106888!10778-110G4;0.0290802!10633-108I3;0.992066!10818-111B8;0.51088!10819-111B9;0.813118!10820-111C1;0.803474!10484-107A7;0.898945!10808-111A7;0.921056!10169-103B7;0.601358!10153-102I9;0.192664!13425-144D5;0.082629!13433-144E4;0.922013!13437-144E8;0.944496!11904-125F5;0.990522!11905-125F6;0.12625!10039-101F3;0.358645!10791-110H8;0.127618!10017-101C8;0.211451!10045-101F9;0.771311!10509-107D5;0.594498!10839-111E2;0.949367!10692-109F8;0.995245!10079-102A7;0.954149!10078-102A6;0.0734023!10721-110A1;0.113847!10569-108B2;0.515758!10570-108B3;0.606523!10571-108B4;0.923506!10647-109A8;0.978496!10752-110D5;0.506604!10782-110G8;0.311087!10726-110A6;0.332815!10018-101C9;0.880679!10086-102B5;0.433768!10182-103D2;0.50535!10165-103B3;0.093379!10499-107C4;0.0763086!10408-106B3;0.8499!10019-101D1;0.69572!10068-101I5;0.493909!10075-102A3;0.712378!10077-102A5;0.86476!10727-110A7;0.756108!10775-110G1;0.322641!10412-106B7;0.239552!12231-129F8;0.421933!12232-129F9;0.682189!12233-129G1;0.913705!12234-129G2;0.747127!10414-106B9;0.68376!10170-103B8;0.441183!10183-103D3;0.168316!10150-102I6;0.198653!10174-103C3;0.145549!10155-103A2;0.0653522!10038-101F2;0.0569713!10838-111E1;0.0701232!10759-110E3;0.251804!10514-107E1;0.694876!10465-106H6;0.973405!10691-109F7;0.878378!10843-111E6;0.926329!10844-111E7;0.305766!11747-123G1;0.400279!11748-123G2;0.33712!11749-123G3;0.760757!11750-123G4;0.758538!11751-123G5;0.115512!11840-124H4;0.351322!11752-123G6;0.441955!11753-123G7;0.780594!11754-123G8;0.889242!11755-123G9;0.360988!11756-123H1;0.448836!11833-124G6;0.861721!11760-123H5;0.995641!11836-124G9;0.229991!11758-123H3;0.873994!11835-124G8;0.629166!11762-123H7;0.469212!11838-124H2;0.57629!11757-123H2;0.808674!11759-123H4;0.940606!11761-123H6;0.217424!11842-124H6;0.957399!11837-124H1;0.970878!10568-108B1;0.566737!13230-141I8;0.414266!13231-141I9;0.859929!10696-109G3;0.699918!10493-107B7;0.863391!10494-107B8;0.592423!10850-111F4;0.281234!10851-111F5;0.764648!10852-111F6;0.489732!10853-111F7;0.840076!10854-111F8;0.524386!10855-111F9;0.818903!10856-111G1;0.42099!10847-111F1;0.743317!10846-111E9;0.869222!10848-111F2;0.55314!10845-111E8;0.764852!10857-111G2;0.574289!10858-111G3;0.353941!10156-103A3;0.772525!11901-125F2;0.143736!11902-125F3;0.571859!11903-125F4;0.806635!10689-109F5;0.930248!10648-109A9;0.4249!10784-110H1;0.743487!10744-110C6;0.741292!10772-110F7;0.238208!10474-106I6;0.197958!10600-108E6;0.779142!10684-109E9;0.994762!12226-129F3;0.447255!12227-129F4;0.464949!10508-107D4;0.842425!10539-107G8;0.436536!10607-108F4;0.765713!10555-107I6;0.810892!10774-110F9;0.641396!10637-108I7;0.836435!10663-109C6;0.817692!10728-110A8;0.97859!10729-110A9;0.119502!10430-106D7;0.442306!10730-110B1;0.731263!10813-111B3;0.657002!10812-111B2;0.141884!10037-101F1;0.103981!10172-103C1;0.112905!10163-103B1;0.21785!10076-102A4;0.112612!10073-102A1;0.10885!10036-101E9;0.185364!10195-103E6;0.0990645!10277-104E7;0.133557!10434-106E2;0.140488!10550-107I1;0.726336!10545-107H5;0.697564!10544-107H4;0.356367!10704-109H2;0.368538!10510-107D6;0.520941!10558-107I9;0.796362!10020-101D2;0.467081!10732-110B3;0.482861!10049-101G4;0.846812!10698-109G5;0.26896!10437-106E5;0.873244!10417-106C3;0.195456!10035-101E8;0.276296!10171-103B9;0.128457!10157-103A4;0.140437!10034-101E7;0.178533!10072-101I9;0.11547!10199-103F1;0.226154!10200-103F2;0.666965!10697-109G4;0.734309!10723-110A3;0.682977!10179-103C8;0.525042!10160-103A7;0.069744!10180-103C9;0.101665!10162-103A9;0.492695!10021-101D3;0.536286!10840-111E3;0.412245!10706-109H4;0.510574!10033-101E6;0.678012!10032-101E5;0.0870805!10490-107B4;0.123193!10439-106E7;0.345251!10022-101D4;0.10084!10176-103C5;0.938332!10469-106I1;0.0983427!10067-101I4;0.246168!10411-106B6;0.335962!10471-106I3;0.444427!10030-101E3;0.340313!10475-106I7;0.0815572!10787-110H4;0.443195!10477-106I9;0.907435!10695-109G2;0.72029!11771-123I7;0.428272!11772-123I8;0.374776!11773-123I9;0.366483!10093-102C3;0.55881!10442-106F1;0.526543!10442-106F1;0.196527!10201-103F3;0.251818!10639-108I9;0.472692!11843-124H7;0.0362422!11841-124H5;0.446073!10693-109F9;0.978974!10436-106E4;0.433578!10483-107A6;0.575977!10282-104F3;0.32041!10023-101D5;0.880296!10066-101I3;0.763747!10065-101I2;0.18819!10800-110I8;0.18655!10610-108F7;0.744451!10841-111E4;0.697461!10541-107H1;0.831644!10842-111E5;0.515389!10562-108A4;0.584826!10024-101D6;0.445885!10064-101I1;0.996757!10609-108F6;0.571381!10048-101G3;0.756451!10781-110G7;0.868691!10181-103D1;0.287716!10159-103A6;0.141028!10056-101H2;0.0894983!10737-110B8;0.0678785!10025-101D7;0.676305!10044-101F8;0.539428!10424-106D1;0.875674!10463-106H4;0.815397!10616-108G4;0.425094!10486-107A9;0.791827!10062-101H8;0.557962!10202-103F4;0.31784!10158-103A5;0.84704!10441-106E9;0.0712731!10031-101E4;0.920752!10063-101H9;0.0929006!10063-101H9;0.17213!11763-123H8;0.607057!11765-123I1;0.646791!11768-123I4;0.890954!10807-111A6;0.721873!10790-110H7;0.636335!10798-110I6;0.794181!10786-110H3;0.982529!10591-108D6;0.364042!10593-108D8;0.490859!10590-108D5;0.191518!10026-101D8;0.84917!10096-102C6;0.930084!10168-103B6;0.745783!10154-103A1;0.0683939!10209-103G2;0.0617321!10061-101H7;0.902921!10027-101D9;0.296816!10043-101F7;0.659081!10783-110G9;0.938885!10028-101E1;0.782835!10060-101H6;0.291832!10203-103F5;0.592462!10059-101H5;0.675413!10047-101G2;0.122216!10029-101E2;0.881202!10058-101H4;0.979755!10418-106C4;0.217954!10492-107B6;0.919479!10694-109G1;0.675318!10797-110I5;0.937552!10057-101H3;0.304083!10100-102D1;0.0619536!10055-101H1;0.613931!10204-103F6;0.845563!10191-103E2;0.894989!10563-108A5;0.750632
|name=13-GGATTTGT,BestGuess:Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer(0.704713043873326),T:2522.0(46.38%),B:16396.8(38.37%),P:1e-29
|name=13-GGATTTGT,BestGuess:Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer(0.704713043873326),T:2522.0(46.38%),B:16396.8(38.37%),P:1e-29
|tomtom_result=br_Z1#MA0010.1;-1;0.00784092;3.73228;1;7;GGATTTGT;GATTTGTCTATTAC;-!HMG-I/Y#MA0045.1;6;0.0138111;6.57406;1;8;GGATTTGT;GTTTTTCCATTTGTTG;-!NDT80#MA0343.1;4;0.0187527;8.9263;1;8;GGATTTGT;TTGCGTTTTTGTGGCCGGAAA;-!twi#MA0249.1;2;0.0188191;8.95789;1;8;GGATTTGT;TCGCATATGTTG;+!FKH1#MA0296.1;0;0.0196664;9.36118;1;8;GGATTTGT;TGAATTGTAAACAAAGAGGA;+!SOX10#MA0442.1;-2;0.0208995;9.94815;1;6;GGATTTGT;CTTTGT;+
}}
}}

Latest revision as of 14:15, 7 September 2012

Full Name: 13-GGATTTGT,BestGuess:Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer(0.704713043873326),T:2522.0(46.38%),B:16396.8(38.37%),P:1e-29

Motif matrix
POACGT
1161.408234.5461929.33196.716
2206.804224.4581848.626242.112
31558.596267.332375.778320.294
4302.64143.754194.1941881.412
583.226267.332302.641868.802
6105.924158.886274.8981982.292
7174.018201.761987.336158.886
8118.534151.32166.4522085.694

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
br_Z1#MA0010.1-10.007840923.7322817GGATTTGTGATTTGTCTATTAC-
HMG-I/Y#MA0045.160.01381116.5740618GGATTTGTGTTTTTCCATTTGTTG-
NDT80#MA0343.140.01875278.926318GGATTTGTTTGCGTTTTTGTGGCCGGAAA-
twi#MA0249.120.01881918.9578918GGATTTGTTCGCATATGTTG+
FKH1#MA0296.100.01966649.3611818GGATTTGTTGAATTGTAAACAAAGAGGA+
SOX10#MA0442.1-20.02089959.9481516GGATTTGTCTTTGT+
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