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MacroAPE 1083:GAAGSCG,motif658: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.922;104.186;645.4;171.492!2;431.496;106.03;194.542;189.932!3;632.492;0.922;0.922;287.664!4;291.352;0.922;628.804;0.922!5;0.922;309.792;382...")
 
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0827-111C8;0.0748586!10789-110H6;0.285798!10828-111C9;0.770313!10788-110H5;0.676961!10792-110H9;0.186102!10765-110E9;0.908447!10829-111D1;0.47501!10830-111D2;0.174461!10831-111D3;0.133287!10832-111D4;0.354973!10833-111D5;0.354418!10764-110E8;0.26063!10770-110F5;0.298283!10399-106A3;0.179062!10400-106A4;0.126677!10405-106A9;0.122898!10834-111D6;0.123838!10835-111D7;0.161377!10836-111D8;0.134404!10837-111D9;0.0585335!10699-109G6;0.367332!10802-111A1;0.178015!10796-110I4;0.33134!10010-101C1;0.0891573!10810-111A9;0.0614244!10421-106C7;0.0221744!10708-109H6;0.372242!12235-129G3;0.00403016!12236-129G4;0.0721147!12237-129G5;0.600828!10167-103B5;0.501126!10151-102I7;0.998979!10428-106D5;0.984379!10795-110I3;0.386606!10805-111A4;0.121998!10052-101G7;0.0394575!10189-103D9;0.0219475!10589-108D4;0.0973057!10425-106D2;0.0365062!10427-106D4;0.118879!10702-109G9;0.458216!10432-106D9;0.387604!10496-107C1;0.0685389!10718-109I7;0.108709!10011-101C2;0.393406!10053-101G8;0.0383807!10686-109F2;0.062203!10084-102B3;0.663573!10012-101C3;0.721085!10085-102B4;0.729244!10482-107A5;0.618432!10419-106C5;0.0201021!10080-102A8;0.0148188!10760-110E4;0.150856!10709-109H7;0.189537!10710-109H8;0.0965581!10703-109H1;0.112145!10719-109I8;0.0218099!10642-109A3;0.0870569!10177-103C6;0.0338778!10164-103B2;0.593278!10173-103C2;0.993107!10166-103B4;0.598063!10083-102B2;0.728316!10188-103D8;0.908589!10552-107I3;0.597764!10553-107I4;0.157348!10013-101C4;0.367625!10536-107G5;0.0399251!10618-108G6;0.0123243!10423-106C9;0.00163695!10785-110H2;0.0438348!12238-129G6;0.0650963!12239-129G7;0.00636849!12240-129G8;0.714445!10416-106C2;0.0119386!10801-110I9;0.249865!10766-110F1;0.342976!10824-111C5;0.576559!10825-111C6;0.161733!10826-111C7;0.163539!10454-106G4;0.173751!10409-106B4;0.153711!10638-108I8;0.79127!10636-108I6;0.141735!10513-107D9;0.164347!10420-106C6;0.100124!10082-102B1;0.055488!10014-101C5;0.17658!10070-101I7;0.0430228!10452-106G2;0.0481043!10453-106G3;0.26552!10449-106F8;0.15993!10042-101F6;0.13054!10069-101I6;0.331377!10193-103E4;0.0617951!10631-108I1;0.652412!10438-106E6;0.174104!10488-107B2;0.131892!10196-103E7;0.032679!10071-101I8;0.114055!10071-101I8;0.0741979!10041-101F5;0.70002!10451-106G1;0.0931817!10450-106F9;0.0812837!10604-108F1;0.0471537!10605-108F2;0.00603434!10606-108F3;0.0143019!10603-108E9;0.0143346!10497-107C2;0.00434034!10448-106F7;0.0535042!10643-109A4;0.00324221!10426-106D3;0.247347!10431-106D8;0.272077!10197-103E8;0.105957!10443-106F2;0.0170989!10815-111B5;0.135162!10816-111B6;0.0400544!10817-111B7;0.0447171!10015-101C6;0.0532429!10410-106B5;0.0291532!10054-101G9;0.117927!10758-110E2;0.0522778!10711-109H9;0.0146258!10040-101F4;0.0108171!10470-106I2;0.97146!10415-106C1;0.0971792!10198-103E9;0.0631544!10614-108G2;0.0851691!10612-108F9;0.226693!10549-107H9;0.062704!10615-108G3;0.0200094!10487-107B1;0.155491!10433-106E1;0.16617!10688-109F4;0.089339!10444-106F3;0.0587606!10444-106F3;0.0451672!10485-107A8;0.0450882!10413-106B8;0.101896!10175-103C4;0.114417!10161-103A8;0.64739!12131-128D7;0.714294!10624-108H3;0.0155283!10712-109I1;0.464713!10205-103F7;0.411536!10206-103F8;0.0607055!10207-103F9;0.07372!10050-101G5;0.311477!10051-101G6;0.0851987!10016-101C7;0.0439974!10046-101G1;0.064175!10778-110G4;0.0539106!10633-108I3;0.503663!10818-111B8;0.016392!10819-111B9;0.0389957!10820-111C1;0.0350561!10484-107A7;0.0340673!10808-111A7;0.146864!10169-103B7;0.17721!10153-102I9;0.990376!13425-144D5;0.77706!13433-144E4;0.0639888!13437-144E8;0.0809985!11904-125F5;0.0832016!11905-125F6;0.431617!10039-101F3;0.22623!10791-110H8;0.895717!10017-101C8;0.131092!10045-101F9;0.0265182!10509-107D5;0.0586047!10839-111E2;0.10684!10692-109F8;0.641888!10079-102A7;0.0915004!10078-102A6;0.0549343!10721-110A1;0.053226!10569-108B2;0.00655653!10570-108B3;0.0782188!10571-108B4;0.213738!10647-109A8;0.126736!10752-110D5;0.0168446!10782-110G8;0.15565!10726-110A6;0.185942!10018-101C9;0.00807598!10086-102B5;0.0269762!10182-103D2;0.0212207!10165-103B3;0.488885!10499-107C4;0.569815!10408-106B3;0.026326!10019-101D1;0.0375463!10068-101I5;0.00691923!10075-102A3;0.0220971!10077-102A5;0.0117629!10727-110A7;0.0847635!10775-110G1;0.66878!10412-106B7;0.200925!12231-129F8;0.136291!12232-129F9;0.439329!12233-129G1;0.123651!12234-129G2;0.11427!10414-106B9;0.319375!10170-103B8;0.0839657!10183-103D3;0.711472!10150-102I6;0.923329!10174-103C3;0.961436!10155-103A2;0.17541!10038-101F2;0.283453!10838-111E1;0.197695!10759-110E3;0.0804098!10514-107E1;0.0723584!10465-106H6;0.143845!10691-109F7;0.341283!10843-111E6;0.386679!10844-111E7;0.0443925!11747-123G1;0.0617408!11748-123G2;0.797648!11749-123G3;0.365471!11750-123G4;0.12868!11751-123G5;0.122433!11840-124H4;0.0434979!11752-123G6;0.0371652!11753-123G7;0.26249!11754-123G8;0.192691!11755-123G9;0.455607!11756-123H1;0.941145!11833-124G6;0.917168!11760-123H5;0.373863!11836-124G9;0.796552!11758-123H3;0.19878!11835-124G8;0.562613!11762-123H7;0.233326!11838-124H2;0.286971!11757-123H2;0.221808!11759-123H4;0.749444!11761-123H6;0.940575!11842-124H6;0.281587!11837-124H1;0.362825!10568-108B1;0.298289!13230-141I8;0.865789!13231-141I9;0.0752003!10696-109G3;0.100437!10493-107B7;0.846033!10494-107B8;0.0623379!10850-111F4;0.0204583!10851-111F5;0.0413233!10852-111F6;0.0283169!10853-111F7;0.0872328!10854-111F8;0.126211!10855-111F9;0.00142485!10856-111G1;0.722328!10847-111F1;0.17441!10846-111E9;0.132894!10848-111F2;0.0676316!10845-111E8;0.00851811!10857-111G2;0.0188907!10858-111G3;0.0825966!10156-103A3;0.0447355!11901-125F2;0.979404!11902-125F3;0.779269!11903-125F4;0.661943!10689-109F5;0.946553!10648-109A9;0.379973!10784-110H1;0.409383!10744-110C6;0.0503867!10772-110F7;0.501132!10474-106I6;0.197486!10600-108E6;0.930186!10684-109E9;0.0151555!12226-129F3;0.0308578!12227-129F4;0.939834!10508-107D4;0.983397!10539-107G8;0.0361326!10607-108F4;0.0442502!10555-107I6;0.0623394!10774-110F9;0.0552568!10637-108I7;0.0490316!10663-109C6;0.173913!10728-110A8;0.224603!10729-110A9;0.0787595!10430-106D7;0.686432!10730-110B1;0.136738!10813-111B3;0.0482621!10812-111B2;0.15994!10037-101F1;0.124593!10172-103C1;0.799606!10163-103B1;0.773648!10076-102A4;0.996436!10073-102A1;0.903866!10036-101E9;0.458544!10195-103E6;0.853924!10277-104E7;0.919737!10434-106E2;0.910037!10550-107I1;0.149699!10545-107H5;0.273226!10544-107H4;0.148506!10704-109H2;0.0520976!10510-107D6;0.97107!10558-107I9;0.0168464!10020-101D2;0.687003!10732-110B3;0.0681002!10049-101G4;0.314398!10698-109G5;0.358495!10437-106E5;0.0255095!10417-106C3;0.319754!10035-101E8;0.57025!10171-103B9;0.897835!10157-103A4;0.871623!10034-101E7;0.956205!10072-101I9;0.874322!10199-103F1;0.541195!10200-103F2;0.0552742!10697-109G4;0.0232903!10723-110A3;0.200629!10179-103C8;0.977267!10160-103A7;0.993867!10180-103C9;0.74765!10162-103A9;0.713705!10021-101D3;0.689435!10840-111E3;0.0271994!10706-109H4;0.64305!10033-101E6;0.715892!10032-101E5;0.525774!10490-107B4;0.892122!10439-106E7;0.0508391!10022-101D4;0.0765685!10176-103C5;0.0564293!10469-106I1;0.8057!10067-101I4;0.171597!10411-106B6;0.194974!10471-106I3;0.0463451!10030-101E3;0.712393!10475-106I7;0.120791!10787-110H4;0.0155899!10477-106I9;0.0892614!10695-109G2;0.195704!11771-123I7;0.895941!11772-123I8;0.441745!11773-123I9;0.29064!10093-102C3;0.732748!10442-106F1;0.0197817!10442-106F1;0.0720845!10201-103F3;0.0942904!10639-108I9;0.0996312!11843-124H7;0.298358!11841-124H5;0.813968!10693-109F9;0.169235!10436-106E4;0.206926!10483-107A6;0.123989!10282-104F3;0.0877853!10023-101D5;0.0511427!10066-101I3;0.0301657!10065-101I2;0.0277824!10800-110I8;0.0235798!10610-108F7;0.0252953!10841-111E4;0.0823801!10541-107H1;0.04519!10842-111E5;0.0989496!10562-108A4;0.0363025!10024-101D6;0.142906!10064-101I1;0.0524802!10609-108F6;0.0586344!10048-101G3;0.0871419!10781-110G7;0.130404!10181-103D1;0.132392!10159-103A6;0.180944!10056-101H2;0.317477!10737-110B8;0.162253!10025-101D7;0.503323!10044-101F8;0.0500907!10424-106D1;0.0665416!10463-106H4;0.262139!10616-108G4;0.187151!10486-107A9;0.182038!10062-101H8;0.0741274!10202-103F4;0.201871!10158-103A5;0.0553513!10441-106E9;0.244338!10031-101E4;0.0470433!10063-101H9;0.705051!10063-101H9;0.518475!11763-123H8;0.0503378!11765-123I1;0.209865!11768-123I4;0.084808!10807-111A6;0.134122!10790-110H7;0.00777521!10798-110I6;0.0594777!10786-110H3;0.0117473!10591-108D6;0.0653294!10593-108D8;0.0160092!10590-108D5;0.00920747!10026-101D8;0.0487029!10096-102C6;0.167335!10168-103B6;0.0742864!10154-103A1;0.559603!10209-103G2;0.664994!10061-101H7;0.0185876!10027-101D9;0.0155919!10043-101F7;0.977673!10783-110G9;0.0578381!10028-101E1;0.124941!10060-101H6;0.0190565!10203-103F5;0.0642549!10059-101H5;0.0169892!10047-101G2;0.0276399!10029-101E2;0.0238792!10058-101H4;0.0306057!10418-106C4;0.0244038!10492-107B6;0.11036!10694-109G1;0.108773!10797-110I5;0.151448!10057-101H3;0.0755786!10100-102D1;0.0410956!10055-101H1;0.0856554!10204-103F6;0.0837166!10191-103E2;0.365777!10563-108A5;0.0295608
|name=GAAGSCG,motif658,CNhs12726,T:922.0(40.16%),B:18333.6(29.01%),P:1e-29
|name=GAAGSCG,motif658,CNhs12726,T:922.0(40.16%),B:18333.6(29.01%),P:1e-29
|tomtom_result=LEU3#MA0324.1;2;0.0053417;2.54265;1;7;GAAGGCG;CCGTTACCGG;+!DOT6#MA0351.1;1;0.00780148;3.71351;1;7;GAAGGCG;AGGATGCGATGAGGTGCAGAA;-!YPR015C#MA0435.1;1;0.0084647;4.0292;1;7;GAAGGCG;TGAAGACGTAAATCCTTACA;+!che-1#MA0260.1;0;0.0085387;4.06442;1;6;GAAGGCG;GAAACC;+!TOD6#MA0350.1;1;0.0121251;5.77154;1;7;GAAGGCG;AAAACGCGATGAGCTGTGCCT;-!RPN4#MA0373.1;0;0.0153404;7.30204;1;7;GAAGGCG;GGTGGCG;+!STP4#MA0397.1;0;0.0209666;9.9801;1;7;GAAGGCG;GATAGCGCA;+
}}
}}

Latest revision as of 14:34, 7 September 2012

Full Name: GAAGSCG,motif658,CNhs12726,T:922.0(40.16%),B:18333.6(29.01%),P:1e-29

Motif matrix
POACGT
10.922104.186645.4171.492
2431.496106.03194.542189.932
3632.4920.9220.922287.664
4291.3520.922628.8040.922
50.922309.792382.63228.656
60.922919.2340.9220.922
70.9220.922919.2340.922

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
LEU3#MA0324.120.00534172.5426517GAAGGCGCCGTTACCGG+
DOT6#MA0351.110.007801483.7135117GAAGGCGAGGATGCGATGAGGTGCAGAA-
YPR015C#MA0435.110.00846474.029217GAAGGCGTGAAGACGTAAATCCTTACA+
che-1#MA0260.100.00853874.0644216GAAGGCGGAAACC+
TOD6#MA0350.110.01212515.7715417GAAGGCGAAAACGCGATGAGCTGTGCCT-
RPN4#MA0373.100.01534047.3020417GAAGGCGGGTGGCG+
STP4#MA0397.100.02096669.980117GAAGGCGGATAGCGCA+
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