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MacroAPE 1083:4-GAAGTRCCCAAGAAA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;4.389;0.057;51.072;1.482!2;51.414;2.964;2.565;0.057!3;35.34;5.928;11.286;4.446!4;2.964;6.612;44.46;2.964!5;4.503;4.503;1.596;46.398!6;22.914...")
 
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0455-106G5;0.764452!10534-107G3;0.544277!10429-106D6;0.295022!10464-106H5;0.200538!10827-111C8;0.632235!10789-110H6;0.589752!10828-111C9;0.979228!10788-110H5;0.410178!10792-110H9;0.500652!10765-110E9;0.974941!10829-111D1;0.368854!10830-111D2;0.218258!10831-111D3;0.185653!10832-111D4;0.914241!10833-111D5;0.6504!10764-110E8;0.899009!10770-110F5;0.276626!10399-106A3;0.885569!10400-106A4;0.714266!10405-106A9;0.410326!10834-111D6;0.47186!10835-111D7;0.702309!10836-111D8;0.593007!10837-111D9;0.864983!10699-109G6;0.0655625!10802-111A1;0.57738!10796-110I4;0.561555!10010-101C1;0.393081!10810-111A9;0.86502!10421-106C7;0.373335!10708-109H6;0.782662!12235-129G3;0.978608!12236-129G4;0.489822!12237-129G5;0.212543!10167-103B5;0.957639!10151-102I7;0.062215!10428-106D5;0.0582705!10795-110I3;0.309981!10805-111A4;0.779801!10052-101G7;0.102158!10189-103D9;0.10532!10589-108D4;0.726961!10425-106D2;0.424322!10427-106D4;0.384792!10702-109G9;0.784988!10432-106D9;0.112543!10496-107C1;0.167712!10718-109I7;0.53463!10011-101C2;0.916471!10053-101G8;0.507994!10686-109F2;0.861424!10084-102B3;0.574909!10012-101C3;0.123579!10085-102B4;0.0919128!10482-107A5;0.00104299!10419-106C5;0.274903!10080-102A8;0.0542254!10760-110E4;0.938808!10709-109H7;0.773852!10710-109H8;0.0802439!10703-109H1;0.14004!10719-109I8;0.410403!10642-109A3;0.324178!10177-103C6;0.00653547!10164-103B2;0.0391125!10173-103C2;0.0450958!10166-103B4;0.0284596!10083-102B2;0.0291073!10188-103D8;0.0439494!10552-107I3;0.103624!10553-107I4;0.0956203!10013-101C4;0.908491!10536-107G5;0.792746!10618-108G6;0.518227!10423-106C9;0.960817!10785-110H2;0.85712!12238-129G6;0.93753!12239-129G7;0.944448!12240-129G8;0.0146067!10416-106C2;0.670018!10801-110I9;0.287231!10766-110F1;0.854368!10824-111C5;0.942522!10825-111C6;0.243554!10826-111C7;0.287162!10454-106G4;0.234872!10409-106B4;0.556199!10638-108I8;0.775853!10636-108I6;0.887505!10513-107D9;0.451055!10420-106C6;0.802371!10082-102B1;0.00741749!10014-101C5;0.468061!10070-101I7;0.639036!10452-106G2;0.390757!10453-106G3;0.185842!10449-106F8;0.294946!10042-101F6;0.430913!10069-101I6;0.0301678!10193-103E4;0.400156!10631-108I1;0.0419083!10438-106E6;0.522903!10488-107B2;0.372559!10196-103E7;0.94861!10071-101I8;0.693775!10071-101I8;0.508721!10041-101F5;0.00396357!10451-106G1;0.930481!10450-106F9;0.576933!10604-108F1;0.543338!10605-108F2;0.977207!10606-108F3;0.609867!10603-108E9;0.38335!10497-107C2;0.42906!10448-106F7;0.960976!10643-109A4;0.989512!10426-106D3;0.986089!10431-106D8;0.980117!10197-103E8;0.736729!10443-106F2;0.747268!10815-111B5;0.300701!10816-111B6;0.0972847!10817-111B7;0.327048!10015-101C6;0.0999246!10410-106B5;0.264858!10054-101G9;0.492811!10758-110E2;0.150984!10711-109H9;0.0338877!10040-101F4;0.346605!10470-106I2;0.0359806!10415-106C1;0.310565!10198-103E9;0.559689!10614-108G2;0.591753!10612-108F9;0.447973!10549-107H9;0.680782!10615-108G3;0.229633!10487-107B1;0.815359!10433-106E1;0.743662!10688-109F4;0.773138!10444-106F3;0.517104!10444-106F3;0.326204!10485-107A8;0.378971!10413-106B8;0.517936!10175-103C4;0.00974475!10161-103A8;0.12032!12131-128D7;0.0826498!10624-108H3;0.0101035!10712-109I1;0.520028!10205-103F7;0.568765!10206-103F8;0.462571!10207-103F9;0.778939!10050-101G5;0.952989!10051-101G6;0.986543!10016-101C7;0.358927!10046-101G1;0.602106!10778-110G4;0.0760346!10633-108I3;0.108204!10818-111B8;0.208234!10819-111B9;0.796117!10820-111C1;0.702628!10484-107A7;0.85192!10808-111A7;0.456442!10169-103B7;0.846881!10153-102I9;0.0943541!13425-144D5;0.0645275!13433-144E4;0.941572!13437-144E8;0.746574!11904-125F5;0.661309!11905-125F6;0.590897!10039-101F3;0.408701!10791-110H8;0.0345179!10017-101C8;0.435432!10045-101F9;0.445389!10509-107D5;0.298642!10839-111E2;0.0486467!10692-109F8;0.593578!10079-102A7;0.368425!10078-102A6;0.249453!10721-110A1;0.302306!10569-108B2;0.996909!10570-108B3;0.252893!10571-108B4;0.193606!10647-109A8;0.38188!10752-110D5;0.319369!10782-110G8;0.480243!10726-110A6;0.526344!10018-101C9;0.585224!10086-102B5;0.823131!10182-103D2;0.96239!10165-103B3;0.322989!10499-107C4;0.117018!10408-106B3;0.571481!10019-101D1;0.246651!10068-101I5;0.621739!10075-102A3;0.0198319!10077-102A5;0.607284!10727-110A7;0.783921!10775-110G1;0.90594!10412-106B7;0.218308!12231-129F8;0.724828!12232-129F9;0.658331!12233-129G1;0.455821!12234-129G2;0.683275!10414-106B9;0.274324!10170-103B8;0.049899!10183-103D3;0.117793!10150-102I6;0.14944!10174-103C3;0.109137!10155-103A2;0.507041!10038-101F2;0.160179!10838-111E1;0.128714!10759-110E3;0.0194336!10514-107E1;0.654332!10465-106H6;0.0116938!10691-109F7;0.923132!10843-111E6;0.521839!10844-111E7;0.0991074!11747-123G1;0.109383!11748-123G2;0.0980361!11749-123G3;0.218347!11750-123G4;0.243877!11751-123G5;0.588606!11840-124H4;0.341982!11752-123G6;0.707023!11753-123G7;0.493382!11754-123G8;0.48107!11755-123G9;0.32808!11756-123H1;0.30356!11833-124G6;0.372393!11760-123H5;0.896945!11836-124G9;0.647338!11758-123H3;0.113072!11835-124G8;0.0665072!11762-123H7;0.12828!11838-124H2;0.421184!11757-123H2;0.287479!11759-123H4;0.361583!11761-123H6;0.678692!11842-124H6;0.974866!11837-124H1;0.986312!10568-108B1;0.0859517!13230-141I8;0.0578871!13231-141I9;0.0405322!10696-109G3;0.0431511!10493-107B7;0.998869!10494-107B8;0.38213!10850-111F4;0.137763!10851-111F5;0.104191!10852-111F6;0.0523037!10853-111F7;0.05496!10854-111F8;0.133812!10855-111F9;0.480844!10856-111G1;4.51871e-05!10847-111F1;0.00412092!10846-111E9;0.412967!10848-111F2;0.248352!10845-111E8;0.792657!10857-111G2;0.397013!10858-111G3;0.156222!10156-103A3;0.277902!11901-125F2;0.0827219!11902-125F3;0.300044!11903-125F4;0.524688!10689-109F5;0.38019!10648-109A9;0.555731!10784-110H1;0.447394!10744-110C6;0.195014!10772-110F7;0.772788!10474-106I6;0.791429!10600-108E6;0.611882!10684-109E9;0.505188!12226-129F3;0.733876!12227-129F4;0.8199!10508-107D4;0.0113886!10539-107G8;0.0201115!10607-108F4;0.0546154!10555-107I6;0.726693!10774-110F9;0.0885166!10637-108I7;0.705944!10663-109C6;0.0152311!10728-110A8;0.584371!10729-110A9;0.537194!10430-106D7;0.069278!10730-110B1;0.0374175!10813-111B3;0.646289!10812-111B2;0.19705!10037-101F1;0.36449!10172-103C1;0.031399!10163-103B1;0.111842!10076-102A4;0.0566134!10073-102A1;0.0783413!10036-101E9;0.00160378!10195-103E6;0.0387586!10277-104E7;0.0999092!10434-106E2;0.0706992!10550-107I1;0.223239!10545-107H5;0.337423!10544-107H4;0.0890056!10704-109H2;0.684113!10510-107D6;0.230174!10558-107I9;0.179986!10020-101D2;0.0645517!10732-110B3;0.494044!10049-101G4;0.125014!10698-109G5;0.649887!10437-106E5;0.607167!10417-106C3;0.104783!10035-101E8;0.0797252!10171-103B9;0.0417641!10157-103A4;0.0936723!10034-101E7;0.0759393!10072-101I9;0.0552276!10199-103F1;0.00224539!10200-103F2;0.73287!10697-109G4;0.472764!10723-110A3;0.34558!10179-103C8;0.856026!10160-103A7;0.285856!10180-103C9;0.0869094!10162-103A9;0.147454!10021-101D3;0.0758702!10840-111E3;0.7273!10706-109H4;0.875171!10033-101E6;0.206158!10032-101E5;0.115741!10490-107B4;0.0637702!10439-106E7;0.992347!10022-101D4;0.284691!10176-103C5;0.897239!10469-106I1;0.0608072!10067-101I4;0.296841!10411-106B6;0.14896!10471-106I3;0.162025!10030-101E3;0.305153!10475-106I7;0.141789!10787-110H4;0.173241!10477-106I9;0.171989!10695-109G2;0.104046!11771-123I7;0.964704!11772-123I8;0.93765!11773-123I9;0.942547!10093-102C3;0.324563!10442-106F1;0.365987!10442-106F1;0.947896!10201-103F3;0.82256!10639-108I9;0.222045!11843-124H7;0.947598!11841-124H5;0.476377!10693-109F9;0.772436!10436-106E4;0.193688!10483-107A6;0.701678!10282-104F3;0.825707!10023-101D5;0.400582!10066-101I3;0.467694!10065-101I2;0.432042!10800-110I8;0.255135!10610-108F7;0.265397!10841-111E4;0.155243!10541-107H1;0.102525!10842-111E5;0.0101151!10562-108A4;0.275308!10024-101D6;0.170834!10064-101I1;0.945007!10609-108F6;0.881162!10048-101G3;0.498543!10781-110G7;0.306314!10181-103D1;0.437404!10159-103A6;0.442686!10056-101H2;0.0507934!10737-110B8;0.331615!10025-101D7;0.0231966!10044-101F8;0.685603!10424-106D1;0.128162!10463-106H4;0.19468!10616-108G4;0.75642!10486-107A9;0.675036!10062-101H8;0.276616!10202-103F4;0.161393!10158-103A5;0.741938!10441-106E9;0.115862!10031-101E4;0.191029!10063-101H9;0.0495404!10063-101H9;0.00932867!11763-123H8;0.597459!11765-123I1;0.0743794!11768-123I4;0.269526!10807-111A6;0.147388!10790-110H7;0.156327!10798-110I6;0.305088!10786-110H3;0.889981!10591-108D6;0.875463!10593-108D8;0.980935!10590-108D5;0.4327!10026-101D8;0.805081!10096-102C6;0.0265534!10168-103B6;0.00643907!10154-103A1;0.0877528!10209-103G2;0.0505734!10061-101H7;0.801826!10027-101D9;0.18366!10043-101F7;0.36587!10783-110G9;0.087256!10028-101E1;0.537195!10060-101H6;0.495773!10203-103F5;0.190232!10059-101H5;0.826277!10047-101G2;0.548155!10029-101E2;0.987246!10058-101H4;0.722631!10418-106C4;0.511495!10492-107B6;0.181586!10694-109G1;0.583688!10797-110I5;0.889242!10057-101H3;0.125393!10100-102D1;0.900148!10055-101H1;0.42551!10204-103F6;0.497218!10191-103E2;0.64611!10563-108A5;0.533952
|name=4-GAAGTRCCCAAGAAA,BestGuess:STAT6/Macrophage-Stat6-ChIP-Seq/Homer(0.635535008220077),T:57.0(1.74%),B:80.1(0.17%),P:1e-30
|name=4-GAAGTRCCCAAGAAA,BestGuess:STAT6/Macrophage-Stat6-ChIP-Seq/Homer(0.635535008220077),T:57.0(1.74%),B:80.1(0.17%),P:1e-30
|tomtom_result=USV1#MA0413.1;0;0.00843442;4.01478;1;15;GAAGTACCCAAGAAA;AAATTCCCCCTGAATTTGTG;+!EBF1#MA0154.1;-5;0.0100543;4.78587;1;10;GAAGTACCCAAGAAA;ACCCAAGGGA;+!cad#MA0216.1;-8;0.0127968;6.09125;1;7;GAAGTACCCAAGAAA;CAATAAA;-!SFL1#MA0377.1;1;0.0130076;6.19161;1;15;GAAGTACCCAAGAAA;TAGAGAATAGAAGAAATAAAA;+!ARO80#MA0273.1;2;0.0153573;7.31008;1;15;GAAGTACCCAAGAAA;ACATACTTGCCGAGAATTATC;-!FEV#MA0156.1;-8;0.0196136;9.33608;1;7;GAAGTACCCAAGAAA;CAGGAAAT;+
}}
}}

Latest revision as of 15:02, 7 September 2012

Full Name: 4-GAAGTRCCCAAGAAA,BestGuess:STAT6/Macrophage-Stat6-ChIP-Seq/Homer(0.635535008220077),T:57.0(1.74%),B:80.1(0.17%),P:1e-30

Motif matrix
POACGT
14.3890.05751.0721.482
251.4142.9642.5650.057
335.345.92811.2864.446
42.9646.61244.462.964
54.5034.5031.59646.398
622.91413.28116.3594.446
70.05743.66211.7991.482
84.44644.0611.4827.011
97.46742.1231.4825.928
1053.9791.4820.0571.482
1152.440.0574.4460.057
122.9640.05752.4971.482
1353.9790.0572.9070.057
1452.9531.0832.9070.057
1537.055.138.8925.928

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
USV1#MA0413.100.008434424.01478115GAAGTACCCAAGAAAAAATTCCCCCTGAATTTGTG+
EBF1#MA0154.1-50.01005434.78587110GAAGTACCCAAGAAAACCCAAGGGA+
cad#MA0216.1-80.01279686.0912517GAAGTACCCAAGAAACAATAAA-
SFL1#MA0377.110.01300766.19161115GAAGTACCCAAGAAATAGAGAATAGAAGAAATAAAA+
ARO80#MA0273.120.01535737.31008115GAAGTACCCAAGAAAACATACTTGCCGAGAATTATC-
FEV#MA0156.1-80.01961369.3360817GAAGTACCCAAGAAACAGGAAAT+
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